FC920647

Overview
NameFC920647
Unique NameFC920647
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length718
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920647 vs. ExPASy Swiss-Prot
Match: CH60_UNCTG (60 kDa chaperonin OS=Uncultured termite group 1 bacterium phylotype Rs-D17 GN=groL PE=3 SV=1)

HSP 1 Score: 254.218 bits (648), Expect = 5.054e-67
Identity = 131/238 (55.04%), Postives = 177/238 (74.37%), Query Frame = 1
Query:    1 AMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELK-RRSESRDALNA 711
            AM KVG+ GV+T+EEGKS+E  L VVEGMQFDRGY S YFVTD+E+M    E+  +++ DKKI++ ++++ +LE  I+     +IIAEDIE EALATLV+NK+RG LK+ A+KAPGFG+R+ + L DIAILTGGTVI +E GL LDK   ++LG A ++V+ K+ TTIV     +  +  R+AQIR  IE+ + DY++EKL ER+AKL GGVAV+ VGA TE E+K ++ +  DALNA
Sbjct:  163 AMEKVGKDGVITVEEGKSSETTLDVVEGMQFDRGYSSHYFVTDTERMQAILEDPYIIITDKKISSMQEILPLLEKIIQTGKSFMIIAEDIEGEALATLVLNKIRGTLKVIAVKAPGFGDRRKEMLQDIAILTGGTVITEETGLKLDKATIDLLGQAKRIVVDKENTTIVSGLGDKKEIEARIAQIRKQIEDTKSDYDKEKLQERLAKLVGGVAVVNVGAATEVEMKTKKFKVEDALNA 400          
BLAST of FC920647 vs. ExPASy Swiss-Prot
Match: CH60_STRSV (60 kDa chaperonin OS=Streptococcus sanguinis (strain SK36) GN=groL PE=3 SV=1)

HSP 1 Score: 254.218 bits (648), Expect = 5.054e-67
Identity = 130/238 (54.62%), Postives = 175/238 (73.53%), Query Frame = 1
Query:    1 AMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKR-RSESRDALNA 711
            AM KVG  GV+T+EE K  E  L VVEGMQFDRGY+S Y VTD+EKM  E +N  +L+ DKKI+N ++++ +LE+ ++   P+LI+A+D++ EAL TLV+NK+RG   + A+KAPGFG+R+   L+DIAILTGGTVI D++GL L     E LG ASKV + KD+T IV      +A++ RVA I++ IE++  +++REKL ER+AKLSGGVAVI+VGA TETELK  +    DALNA
Sbjct:  163 AMEKVGNDGVITIEESKGMETELDVVEGMQFDRGYLSQYMVTDNEKMVAELDNPYILITDKKISNIQEILPLLENILKTNRPLLIVADDVDGEALPTLVLNKIRGTFNVVAVKAPGFGDRRKAMLEDIAILTGGTVITDDLGLELKDATIEALGQASKVTVDKDSTVIVEGSGNPEAIANRVAVIKSQIESSTSEFDREKLQERLAKLSGGVAVIKVGAATETELKEMKLRIEDALNA 400          
BLAST of FC920647 vs. ExPASy Swiss-Prot
Match: CH60_STRSA (60 kDa chaperonin OS=Streptococcus sanguis GN=groL PE=3 SV=1)

HSP 1 Score: 254.218 bits (648), Expect = 5.054e-67
Identity = 130/238 (54.62%), Postives = 175/238 (73.53%), Query Frame = 1
Query:    1 AMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKR-RSESRDALNA 711
            AM KVG  GV+T+EE K  E  L VVEGMQFDRGY+S Y VTD+EKM  E +N  +L+ DKKI+N ++++ +LE+ ++   P+LI+A+D++ EAL TLV+NK+RG   + A+KAPGFG+R+   L+DIAILTGGTVI D++GL L     E LG ASKV + KD+T IV      +A++ RVA I++ IE++  +++REKL ER+AKLSGGVAVI+VGA TETELK  +    DALNA
Sbjct:  163 AMEKVGNDGVITIEESKGMETELDVVEGMQFDRGYLSQYMVTDNEKMVAELDNPYILITDKKISNIQEILPLLENILKTNRPLLIVADDVDGEALPTLVLNKIRGTFNVVAVKAPGFGDRRKAMLEDIAILTGGTVITDDLGLELKDATIEALGQASKVTVDKDSTVIVEGSGNPEAIANRVAVIKSQIESSTSEFDREKLQERLAKLSGGVAVIKVGAATETELKEMKLRIEDALNA 400          
BLAST of FC920647 vs. ExPASy Swiss-Prot
Match: CH60_STRAP (60 kDa chaperonin OS=Streptococcus anginosus GN=groL PE=3 SV=1)

HSP 1 Score: 254.218 bits (648), Expect = 5.054e-67
Identity = 130/238 (54.62%), Postives = 176/238 (73.95%), Query Frame = 1
Query:    1 AMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKR-RSESRDALNA 711
            AM KVG  GV+T+EE K  E  L VVEGMQFDRGY+S Y VTD+EKM  + +N  +L+ DKKI+N ++++ +LE+ ++ + P+LIIA+D++ EAL TLV+NK+RG   + A+KAPGFG+R+   L+DIAILTGGTVI +++GL L     E LG ASKV + KD+T IV      +A++ RVA I++ IE++  D++REKL ER+AKLSGGVAVI+VGA TETELK  +    DALNA
Sbjct:  163 AMEKVGNDGVITIEESKGMETELDVVEGMQFDRGYLSQYMVTDNEKMVADLDNPYILITDKKISNIQEILPLLENILKTSRPLLIIADDVDGEALPTLVLNKIRGTFNVVAVKAPGFGDRRKAMLEDIAILTGGTVITEDLGLELKDATIEALGQASKVTVDKDSTVIVEGSGDAEAIANRVAVIKSQIESSTSDFDREKLQERLAKLSGGVAVIKVGAATETELKEMKLRIEDALNA 400          
BLAST of FC920647 vs. ExPASy Swiss-Prot
Match: CH60_RHOCA (60 kDa chaperonin OS=Rhodobacter capsulatus GN=groL PE=1 SV=1)

HSP 1 Score: 254.218 bits (648), Expect = 5.054e-67
Identity = 130/238 (54.62%), Postives = 174/238 (73.11%), Query Frame = 1
Query:    1 AMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKRRSES-RDALNA 711
            A  KVG  GV+T+EE K  +  + VVEGMQFDRGY+SPYFVT+ +KM  + E+  +LL +KK+++ + ++ +LE  I+   P++I+AED+E EALATLVVNKLRG LKIAA+KAPGFG+R+   L DIAILTGG VI D++G+ L+ V  ++LG A KV ++K+ TTIV     +  ++ RVA IRT IE    DY+REKL ER+AKL+GGVAVI+VG  TE E+K R +   DALNA
Sbjct:  165 ASQKVGNEGVITVEENKGMDTEVEVVEGMQFDRGYLSPYFVTNPDKMIADLEDAYILLHEKKLSSLQPMVPLLEAVIQSTRPLIIVAEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKAMLQDIAILTGGQVISDDLGMKLENVTLDMLGRAKKVTISKENTTIVDGHGDKAEINARVAHIRTQIEETTSDYDREKLQERVAKLAGGVAVIRVGGMTEVEVKERKDRVDDALNA 402          
BLAST of FC920647 vs. ExPASy Swiss-Prot
Match: CH60_HAEDU (60 kDa chaperonin OS=Haemophilus ducreyi GN=groL PE=3 SV=2)

HSP 1 Score: 254.218 bits (648), Expect = 5.054e-67
Identity = 130/238 (54.62%), Postives = 174/238 (73.11%), Query Frame = 1
Query:    1 AMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKRRSES-RDALNA 711
            AM KVG+ GV+T+E+G   ++ L VVEGMQFDRGY+SPYF+   E   VE +N  ++LVDKKI+N R+++ VLE   +   P+LIIAED+E EALATLVVN +RG +K+AA+KAPGFG+R+   L DIAILT GTVI +E+G+ L+K   E LG A +VV+TKD TTI+     +  +  RV QIR  IE++  DY++EKL ER+AKL+GGVAVI+VGA TE  +K + +   DAL+A
Sbjct:  165 AMEKVGKEGVITVEDGTGLDDALDVVEGMQFDRGYLSPYFINKPEAGTVELDNPYIILVDKKISNIREILPVLEAVAKAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIAILTAGTVISEEIGMELEKATLEELGQAKRVVITKDNTTIIDGIGDEAQIKARVVQIRQQIEDSTSDYDKEKLQERVAKLAGGVAVIKVGAATEVAMKEKKDRVDDALHA 402          
BLAST of FC920647 vs. ExPASy Swiss-Prot
Match: CH60_GEOTN (60 kDa chaperonin OS=Geobacillus thermodenitrificans (strain NG80-2) GN=groL PE=3 SV=1)

HSP 1 Score: 254.218 bits (648), Expect = 5.054e-67
Identity = 133/238 (55.88%), Postives = 169/238 (71.01%), Query Frame = 1
Query:    1 AMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELK-RRSESRDALNA 711
            AM +VG  GV+TLEE K     L VVEGMQFDRGY+SPY +TD+EKM    EN  +L+ DKK++N ++L+ VLE  ++   P+LIIAED+E EALATLVVNKLRG     A+KAPGFG+R+   L+DIAILTGG VI +E+G  L       LG ASKVV+TK+TTTIV      + +  R+ QIR  +E    +++REKL ER+AKL+GGVAVI+VGA TETELK R+    DALN+
Sbjct:  163 AMERVGNDGVITLEESKGFTTELDVVEGMQFDRGYVSPYMITDTEKMEAVLENPYILITDKKVSNIQELLPVLEQVVQQGRPLLIIAEDVEGEALATLVVNKLRGTFNAVAVKAPGFGDRRKAMLEDIAILTGGEVISEELGRELKSTTVASLGRASKVVVTKETTTIVEGAGDSERIKARINQIRAQLEETTSEFDREKLQERLAKLAGGVAVIKVGAATETELKERKLRIEDALNS 400          
BLAST of FC920647 vs. ExPASy Swiss-Prot
Match: CH60_EXISA (60 kDa chaperonin OS=Exiguobacterium sp. (strain ATCC BAA-1283 / AT1b) GN=groL PE=3 SV=1)

HSP 1 Score: 254.218 bits (648), Expect = 5.054e-67
Identity = 129/238 (54.20%), Postives = 171/238 (71.85%), Query Frame = 1
Query:    1 AMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELK-RRSESRDALNA 711
            AM +VG  GV+T+EE +     L VVEGMQFDRGY+SPY ++DS+KM    +N  +L+ DKKI+N +++I VLE  ++   PILI+AEDIE +ALATLV+NKLRG     A+KAPGFG+R+   L+D+A LTGG VI +++GL L     ++LG ASKVV+TKDTTT+V     ++ +  RV  IR  IE    D++REKL ER+AKL+GGVAV++VGA TETELK R+    DALNA
Sbjct:  163 AMERVGNDGVITIEESRGFTTELDVVEGMQFDRGYLSPYMISDSDKMEASLDNPYILITDKKISNIQEIIPVLEQVVQQGKPILIVAEDIEGDALATLVLNKLRGTFNAVAVKAPGFGDRRKAMLEDLATLTGGQVITEDLGLDLKSASLDMLGRASKVVVTKDTTTVVEGAGNEETIKARVQTIRNQIEETTSDFDREKLQERLAKLAGGVAVVKVGAATETELKERKLRIEDALNA 400          
BLAST of FC920647 vs. ExPASy Swiss-Prot
Match: CH60_BACSU (60 kDa chaperonin OS=Bacillus subtilis GN=groL PE=1 SV=3)

HSP 1 Score: 254.218 bits (648), Expect = 5.054e-67
Identity = 133/238 (55.88%), Postives = 169/238 (71.01%), Query Frame = 1
Query:    1 AMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELK-RRSESRDALNA 711
            AM +VG  GV+T+EE K     L VVEGMQFDRGY SPY VTDS+KM    +N  +L+ DKKITN ++++ VLE  ++   P+L+IAED+E EALATLVVNKLRG     A+KAPGFG+R+   L+DIA+LTGG VI +++GL L       LG ASKVV+TK+ TTIV      D +S RV QIR  +E    +++REKL ER+AKL+GGVAVI+VGA TETELK R+    DALN+
Sbjct:  163 AMERVGNDGVITIEESKGFTTELEVVEGMQFDRGYASPYMVTDSDKMEAVLDNPYILITDKKITNIQEILPVLEQVVQQGKPLLLIAEDVEGEALATLVVNKLRGTFNAVAVKAPGFGDRRKAMLEDIAVLTGGEVITEDLGLDLKSTQIAQLGRASKVVVTKENTTIVEGAGETDKISARVTQIRAQVEETTSEFDREKLQERLAKLAGGVAVIKVGAATETELKERKLRIEDALNS 400          
BLAST of FC920647 vs. ExPASy Swiss-Prot
Match: CH60_BACFO (60 kDa chaperonin OS=Bacteroides forsythus GN=groL PE=1 SV=3)

HSP 1 Score: 254.218 bits (648), Expect = 5.054e-67
Identity = 129/238 (54.20%), Postives = 173/238 (72.69%), Query Frame = 1
Query:    1 AMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKRRSES-RDALNA 711
            AM KV + GV+T+EE K  E  + VVEGMQFDRGYIS YFVTD+EKM  ++EN  +L+ DKKI+  +DL+ +LE  ++    +LIIAEDI+ EALATLVVN+LRG LK+ A+KAPGFG+R+   L+DIAILTGGTVI +E G+ L+    ++LG+A KV + KD TTIV     + A+  R+ QI+  IE    DY++EKL ER+AKL+GGVAV+ VGA +E E+K + +   DAL+A
Sbjct:  165 AMQKVKKEGVITVEEAKGTETTVEVVEGMQFDRGYISAYFVTDTEKMETQFENPYILIYDKKISVLKDLLPILEQMVQSGRALLIIAEDIDSEALATLVVNRLRGGLKVCAVKAPGFGDRRKAMLEDIAILTGGTVITEEKGMKLEDAKMDMLGSADKVTVNKDNTTIVKGNGDKAAIESRIGQIKAQIETTTSDYDKEKLQERLAKLAGGVAVLYVGAPSEVEMKEKKDRVDDALHA 402          
The following BLAST results are available for this feature:
BLAST of FC920647 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_UNCTG5.054e-6755.0460 kDa chaperonin OS=Uncultured termite group 1 ba... [more]
CH60_STRSV5.054e-6754.6260 kDa chaperonin OS=Streptococcus sanguinis (stra... [more]
CH60_STRSA5.054e-6754.6260 kDa chaperonin OS=Streptococcus sanguis GN=groL... [more]
CH60_STRAP5.054e-6754.6260 kDa chaperonin OS=Streptococcus anginosus GN=gr... [more]
CH60_RHOCA5.054e-6754.6260 kDa chaperonin OS=Rhodobacter capsulatus GN=gro... [more]
CH60_HAEDU5.054e-6754.6260 kDa chaperonin OS=Haemophilus ducreyi GN=groL P... [more]
CH60_GEOTN5.054e-6755.8860 kDa chaperonin OS=Geobacillus thermodenitrifica... [more]
CH60_EXISA5.054e-6754.2060 kDa chaperonin OS=Exiguobacterium sp. (strain A... [more]
CH60_BACSU5.054e-6755.8860 kDa chaperonin OS=Bacillus subtilis GN=groL PE=... [more]
CH60_BACFO5.054e-6754.2060 kDa chaperonin OS=Bacteroides forsythus GN=groL... [more]

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Properties
Property NameValue
Genbank descriptionC32011C02EF RVDevelop1 Citrus clementina cDNA clone C32011C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920647 ID=FC920647; Name=FC920647; organism=Citrus clementina; type=EST; length=718bp
GCCATGAGTAAAGTGGGACGTACGGGTGTGGTGACCCTTGAAGAGGGAAA
AAGTGCTGAGAATATGCTCTATGTTGTTGAGGGAATGCAATTTGATCGTG
GTTATATTTCTCCCTACTTCGTCACTGATAGTGAGAAAATGGCAGTTGAA
TATGAGAACTGCAAGTTGCTTCTTGTGGATAAAAAGATTACCAATGCAAG
GGACCTTATCAACGTTTTGGAAGATGCGATTAGAGGTGCATACCCAATTT
TGATTATTGCAGAAGATATTGAGCAAGAAGCACTGGCAACTCTTGTCGTG
AACAAGCTGAGAGGTGCATTGAAGATTGCTGCTCTTAAAGCTCCTGGTTT
TGGAGAGCGCAAGAGCCAGTACCTTGACGACATTGCTATTTTGACTGGAG
GAACTGTAATCAGAGATGAGGTGGGACTTGCCTTGGACAAAGTTGGCAAG
GAGGTCCTAGGTAATGCTTCTAAAGTTGTGCTCACAAAGGATACCACCAC
CATTGTGGGGGATGGCAGCACCCAGGATGCAGTGAGCAAACGAGTGGCGC
AAATCAGAACTCTAATTGAGAACGCTGAGCAAGACTATGAAAGGGAGAAG
CTTAATGAAAGAATTGCTAAACTGTCAGGTGGTGTTGCTGTCATACAGGT
TGGAGCTCAAACTGAGACAGAGCTTAAGAGAAGAAGTGAGAGTCGAGATG
CTCTTAATGCACAAGCTG
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