FC920647

Overview
NameFC920647
Unique NameFC920647
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length718
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920647 vs. ExPASy Swiss-Prot
Match: CH602_NITWN (60 kDa chaperonin 2 OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=groL2 PE=3 SV=1)

HSP 1 Score: 253.832 bits (647), Expect = 6.600e-67
Identity = 127/233 (54.51%), Postives = 172/233 (73.82%), Query Frame = 1
Query:    1 AMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKRRSESRD 699
            AM KVG  GV+T+EE KS E  L VVEGMQFDRGYISPYFVT++EKM VE ++  +L+ +KK+++  +L+ +LE  ++   P++I+AED+E EALATLVVN+LRG LK+AA+KAPGFG+R+   L DIAILTGG  I +++G+ L+ V  ++LG A KV++ K+ TTIV     +  +  RVAQI+  IE    DY+REKL ER+AKL+GGVAVI+VG  TE E+K R +  D
Sbjct:  165 AMKKVGNEGVITVEEAKSLETELDVVEGMQFDRGYISPYFVTNAEKMRVEMDDAYILINEKKLSSLNELLPLLEAVVQTGKPLVIVAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRKAMLQDIAILTGGQAISEDLGIKLENVTLQMLGRAKKVMIDKENTTIVNGAGKKADIEARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKERKDRVD 397          
BLAST of FC920647 vs. ExPASy Swiss-Prot
Match: CH601_RHOPB (60 kDa chaperonin 1 OS=Rhodopseudomonas palustris (strain BisB18) GN=groL1 PE=3 SV=1)

HSP 1 Score: 253.832 bits (647), Expect = 6.600e-67
Identity = 126/233 (54.08%), Postives = 172/233 (73.82%), Query Frame = 1
Query:    1 AMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKRRSESRD 699
            AM KVG  GV+T+EE KS E  L VVEGMQFDRGYISPYFVT+++KM VE+++  +L+ +KK++N  +L+ +LE  ++   P++I+AED+E EALATLVVN+LRG LK+AA+KAPGFG+R+   L DIAILTGG  I +++G+ ++ V   +LG A KV++ K+ TTIV     +  +  RVAQI+  IE    DY+REKL ER+AKL+GGVAVI+VG  TE E+K R +  D
Sbjct:  165 AMKKVGNEGVITVEEAKSLETELDVVEGMQFDRGYISPYFVTNADKMRVEFDDAYILINEKKLSNLNELLPLLEAVVQTGKPLVIVAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRKAMLQDIAILTGGQAISEDLGIKMENVTLAMLGKAKKVMIDKENTTIVNGAGKKADIEARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEIEVKERKDRVD 397          
BLAST of FC920647 vs. ExPASy Swiss-Prot
Match: CH60_THEEB (60 kDa chaperonin OS=Thermosynechococcus elongatus (strain BP-1) GN=groL PE=3 SV=1)

HSP 1 Score: 253.447 bits (646), Expect = 8.620e-67
Identity = 131/238 (55.04%), Postives = 174/238 (73.11%), Query Frame = 1
Query:    1 AMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELK-RRSESRDALNA 711
            AM KVG+ GV++LEEGKS    L V EGM+FD+GYISPYF TD+E+M    +   +L+ DKKIT  +DL+ +LE   R   P++IIAEDIE+EALATLVVN+LRG L +AA+KAPGFG+R+   L+DIA+LT G VI ++ GL L+    ++LG A ++ +TKD TTIV +G+ + AV  R  QIR  IE  +  Y++EKL ER+AKL+GGVAVI+VGA TETE+K R+    DA+NA
Sbjct:  164 AMDKVGKEGVISLEEGKSMTTELEVTEGMRFDKGYISPYFATDTERMEAVLDEPFVLVTDKKITLVQDLVPILEQVARAGKPLVIIAEDIEKEALATLVVNRLRGVLNVAAVKAPGFGDRRKAMLEDIAVLTAGQVITEDAGLKLENAKLDMLGKARRITITKDHTTIVAEGN-EKAVKARCEQIRRQIEETDSSYDKEKLQERLAKLAGGVAVIKVGAATETEMKDRKLRLEDAINA 400          
BLAST of FC920647 vs. ExPASy Swiss-Prot
Match: CH60_PSYWF (60 kDa chaperonin OS=Psychrobacter sp. (strain PRwf-1) GN=groL PE=3 SV=1)

HSP 1 Score: 253.447 bits (646), Expect = 8.620e-67
Identity = 131/238 (55.04%), Postives = 170/238 (71.43%), Query Frame = 1
Query:    1 AMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKRRSES-RDALNA 711
            AM KVG+ GV+T+EEG   E+ L VVEGMQFDRGYISPYF    + +  E+EN  +LLVDKKI+N R+++ +LE  ++ + P+LIIAED+E EALATLVVN +RG LK  A+KAPGFG+R+   L DIAILTGGTVI +EVG++L+    E LG A KV + K+ T IV     +  +  RV  I   IE +  DY++EKL ER+AKLSGGVAVI+VGA TET +K + +   DAL+A
Sbjct:  164 AMDKVGKKGVITVEEGSGFEDSLEVVEGMQFDRGYISPYFANKQDSLTAEFENPYILLVDKKISNIREIVPLLEQVMQQSKPLLIIAEDVENEALATLVVNNMRGGLKTCAVKAPGFGDRRKAMLQDIAILTGGTVISEEVGMSLETATIEQLGTAKKVTVGKENTVIVDGAGNKADIEARVESINRQIEESTSDYDKEKLQERVAKLSGGVAVIKVGAATETAMKEKKDRVDDALHA 401          
BLAST of FC920647 vs. ExPASy Swiss-Prot
Match: CH60_PROA2 (60 kDa chaperonin OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413) GN=groL PE=3 SV=1)

HSP 1 Score: 253.447 bits (646), Expect = 8.620e-67
Identity = 130/238 (54.62%), Postives = 171/238 (71.85%), Query Frame = 1
Query:    1 AMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELK-RRSESRDALNA 711
            AM KVG+ GV+T+EE K  +  L VVEGMQFDRGY+SPYFVT+SEKM  + E+  +L+ DKKI+N ++L+ VLE   +   P++IIAEDIE EALATLVVNKLRG LK+ A+KAPGFG+R+   L+DIAILTGGTVI +E G  L+      LG A+ + + KD TTIV      D +  R+ +I+  IE +  DY+ EKL ER+AKLSGGVAV+ +GA TE E+K +++   DAL+A
Sbjct:  165 AMDKVGKDGVITVEEAKGMDTELTVVEGMQFDRGYLSPYFVTNSEKMDADLEDPYILIYDKKISNMKELLPVLEKTAQSGRPLMIIAEDIEGEALATLVVNKLRGTLKVCAVKAPGFGDRRKAMLEDIAILTGGTVISEEKGYKLENATISYLGQAASITVDKDNTTIVDGKGQADDIKARIGEIKGQIEKSTSDYDTEKLQERLAKLSGGVAVLNIGASTEVEMKEKKARVEDALHA 402          
BLAST of FC920647 vs. ExPASy Swiss-Prot
Match: CH60_LEGPA (60 kDa chaperonin OS=Legionella pneumophila (strain Paris) GN=groL PE=3 SV=1)

HSP 1 Score: 253.447 bits (646), Expect = 8.620e-67
Identity = 127/238 (53.36%), Postives = 176/238 (73.95%), Query Frame = 1
Query:    1 AMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELK-RRSESRDALNA 711
            AM KVG+ GV+T+E+G   EN L VVEGMQFDRGYISPYF+ + + M+ E E+  +LLVDKK+++ R++++VLE   +   P+LIIAED+E EALATLVVN +RG +K+ A+KAPGFG+R+   L DIAILT G VI +E+G +L+    E LG+A ++V+TK+ TTI+        ++ R+AQIR  +E    DY+REKL ER+AKL+GGVAVI+VGA TE E+K +++   DAL+A
Sbjct:  164 AMEKVGKEGVITVEDGNGLENELSVVEGMQFDRGYISPYFINNQQNMSCELEHPFILLVDKKVSSIREMLSVLEGVAKSGRPLLIIAEDVEGEALATLVVNNMRGIVKVCAVKAPGFGDRRKAMLQDIAILTKGQVISEEIGKSLEGATLEDLGSAKRIVVTKENTTIIDGEGKATEINARIAQIRAQMEETTSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHA 401          
BLAST of FC920647 vs. ExPASy Swiss-Prot
Match: CH60_DESVM (60 kDa chaperonin OS=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) GN=groL PE=3 SV=1)

HSP 1 Score: 253.447 bits (646), Expect = 8.620e-67
Identity = 130/238 (54.62%), Postives = 171/238 (71.85%), Query Frame = 1
Query:    1 AMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKRRSES-RDALNA 711
            AM+KVG+ GV+T+EE K  E  L VVEGMQFDRGY+SPYFVTD EKM  E +   +L  +KKI++ +D++ VLE   +   P++IIAED+E EALATLVVNKLRG L++ A+KAPGFG+R+   L DIA+LTGGTV+ +++G+ L+ +    LG A +VV+ K+ TTIV      + +  RV QIR  I+    DY+REKL ER+AKL GGVAVI VGA TETE+K + +   DALNA
Sbjct:  165 AMAKVGKEGVITVEEAKGLETTLEVVEGMQFDRGYLSPYFVTDPEKMICELDEPFILCNEKKISSMKDMLPVLEQVAKMNRPLVIIAEDVEGEALATLVVNKLRGTLQVVAVKAPGFGDRRKAMLQDIAVLTGGTVVSEDMGVKLENISVADLGTAKRVVVDKENTTIVDGAGKSEDIKARVKQIRAQIDETTSDYDREKLQERLAKLVGGVAVINVGAATETEMKEKKDRVEDALNA 402          
BLAST of FC920647 vs. ExPASy Swiss-Prot
Match: CH60_BUCPP (60 kDa chaperonin OS=Buchnera aphidicola subsp. Pterocomma populeum GN=groL PE=3 SV=1)

HSP 1 Score: 253.447 bits (646), Expect = 8.620e-67
Identity = 128/238 (53.78%), Postives = 177/238 (74.37%), Query Frame = 1
Query:    1 AMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELK-RRSESRDALNA 711
            AM KVG  GV+T+EEG   ++ L VV+GMQFDRGY+SPYF+  SE   VE EN  +L+ DKKI+N R+++ +LE   +   P+LII+ED+E EALATLVVN +RG +K+AA+KAPGFG+ +   L DI+ILT GTVI +E+ + L+K   E LG A +VV++KDTTTI+G    + A+  R+ QIR  I++A  DY++EKLNER+AKL+GGVAV++VGA TE E+K +++   DAL+A
Sbjct:  165 AMEKVGNDGVITVEEGTGLQDELEVVKGMQFDRGYLSPYFINKSETGIVELENPYILMADKKISNIREMLPILESVAKSGKPLLIISEDLEGEALATLVVNSMRGIVKVAAVKAPGFGDCRKAMLQDISILTNGTVISEELAMELEKSTLEDLGQAKRVVISKDTTTIIGGVGEKHAIQARINQIRQEIQDASSDYDKEKLNERLAKLAGGVAVLKVGAATEVEMKEKKARVEDALHA 402          
BLAST of FC920647 vs. ExPASy Swiss-Prot
Match: CH60_ACTP2 (60 kDa chaperonin OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=groL PE=3 SV=1)

HSP 1 Score: 253.447 bits (646), Expect = 8.620e-67
Identity = 131/238 (55.04%), Postives = 174/238 (73.11%), Query Frame = 1
Query:    1 AMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKRRSES-RDALNA 711
            AM KVG+ GV+T+E+G   ++ L VVEGMQFDRGY+SPYF+   E   VE EN  ++LVDKKI+N R+++ VLE   +   P+LI+AEDIE EALATLVVN +RG +K+AA+KAPGFG+R+   L DIAILT GTVI +E+G+ L+K   E LG A +VV+TKD TTI+     +  +  RVAQIR  IE++  DY++EKL ER+AKL+ GVAVI+VGA TE  +K + +   DAL+A
Sbjct:  165 AMEKVGKEGVITVEDGTGLDDALDVVEGMQFDRGYLSPYFINKPEAGTVELENPYIILVDKKISNIREILPVLEAVAKAGKPLLIVAEDIEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIAILTAGTVISEEIGMELEKATLEELGQAKRVVITKDNTTIIDGIGDEAQIKARVAQIRQQIEDSTSDYDKEKLQERVAKLACGVAVIKVGAATEVAMKEKKDRVDDALHA 402          
BLAST of FC920647 vs. ExPASy Swiss-Prot
Match: CH602_POLNA (60 kDa chaperonin 2 OS=Polaromonas naphthalenivorans (strain CJ2) GN=groL2 PE=3 SV=1)

HSP 1 Score: 253.447 bits (646), Expect = 8.620e-67
Identity = 134/239 (56.07%), Postives = 178/239 (74.48%), Query Frame = 1
Query:    1 AMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDA-VSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELK-RRSESRDALNA 711
            AM KVG+ GV+T+E+GKS E+ L VVEGMQFDRGY+SPYF+ + EK +   +N  +LL DKKI+N RDL+  LE   +   P+LIIAE++E EALATLVVN LRG LK+ A+KAPGFG+R+   L+DIA+LTGG VI +EVG++L+KV    LG A ++ + K+ T I+ DGS + A +  RV Q+R  IE A  DY+REKL ER+AKL+GGVAVI+VGA TE E+K +++   DAL+A
Sbjct:  165 AMDKVGKEGVITVEDGKSLESELDVVEGMQFDRGYLSPYFINNPEKQSALLDNPFVLLYDKKISNIRDLLPTLEQVAKAGRPLLIIAEEVEGEALATLVVNTLRGILKVVAVKAPGFGDRRKAMLEDIAVLTGGKVIAEEVGMSLEKVTLADLGQAKRIEVGKENTIII-DGSGEAADIEARVKQVRVQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHA 402          
The following BLAST results are available for this feature:
BLAST of FC920647 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH602_NITWN6.600e-6754.5160 kDa chaperonin 2 OS=Nitrobacter winogradskyi (s... [more]
CH601_RHOPB6.600e-6754.0860 kDa chaperonin 1 OS=Rhodopseudomonas palustris ... [more]
CH60_THEEB8.620e-6755.0460 kDa chaperonin OS=Thermosynechococcus elongatus... [more]
CH60_PSYWF8.620e-6755.0460 kDa chaperonin OS=Psychrobacter sp. (strain PRw... [more]
CH60_PROA28.620e-6754.6260 kDa chaperonin OS=Prosthecochloris aestuarii (s... [more]
CH60_LEGPA8.620e-6753.3660 kDa chaperonin OS=Legionella pneumophila (strai... [more]
CH60_DESVM8.620e-6754.6260 kDa chaperonin OS=Desulfovibrio vulgaris (strai... [more]
CH60_BUCPP8.620e-6753.7860 kDa chaperonin OS=Buchnera aphidicola subsp. Pt... [more]
CH60_ACTP28.620e-6755.0460 kDa chaperonin OS=Actinobacillus pleuropneumoni... [more]
CH602_POLNA8.620e-6756.0760 kDa chaperonin 2 OS=Polaromonas naphthalenivora... [more]

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Properties
Property NameValue
Genbank descriptionC32011C02EF RVDevelop1 Citrus clementina cDNA clone C32011C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920647 ID=FC920647; Name=FC920647; organism=Citrus clementina; type=EST; length=718bp
GCCATGAGTAAAGTGGGACGTACGGGTGTGGTGACCCTTGAAGAGGGAAA
AAGTGCTGAGAATATGCTCTATGTTGTTGAGGGAATGCAATTTGATCGTG
GTTATATTTCTCCCTACTTCGTCACTGATAGTGAGAAAATGGCAGTTGAA
TATGAGAACTGCAAGTTGCTTCTTGTGGATAAAAAGATTACCAATGCAAG
GGACCTTATCAACGTTTTGGAAGATGCGATTAGAGGTGCATACCCAATTT
TGATTATTGCAGAAGATATTGAGCAAGAAGCACTGGCAACTCTTGTCGTG
AACAAGCTGAGAGGTGCATTGAAGATTGCTGCTCTTAAAGCTCCTGGTTT
TGGAGAGCGCAAGAGCCAGTACCTTGACGACATTGCTATTTTGACTGGAG
GAACTGTAATCAGAGATGAGGTGGGACTTGCCTTGGACAAAGTTGGCAAG
GAGGTCCTAGGTAATGCTTCTAAAGTTGTGCTCACAAAGGATACCACCAC
CATTGTGGGGGATGGCAGCACCCAGGATGCAGTGAGCAAACGAGTGGCGC
AAATCAGAACTCTAATTGAGAACGCTGAGCAAGACTATGAAAGGGAGAAG
CTTAATGAAAGAATTGCTAAACTGTCAGGTGGTGTTGCTGTCATACAGGT
TGGAGCTCAAACTGAGACAGAGCTTAAGAGAAGAAGTGAGAGTCGAGATG
CTCTTAATGCACAAGCTG
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