FC920647

Overview
NameFC920647
Unique NameFC920647
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length718
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920647 vs. ExPASy Swiss-Prot
Match: CH601_RHOFD (60 kDa chaperonin 1 OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=groL1 PE=3 SV=1)

HSP 1 Score: 253.447 bits (646), Expect = 8.620e-67
Identity = 130/238 (54.62%), Postives = 174/238 (73.11%), Query Frame = 1
Query:    1 AMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELK-RRSESRDALNA 711
            AM KVG+ GV+T+E+GKS ++ L VVEGMQFDRGY+SPYF+ + EK A   +N  +LL DKKI+N RDL+  LE   +   P+LII+ED+E EALATLVVN +RG LK+ A+KAPGFG+R+   L+DIAILTGG VI +EVG++L+KV    LG+A ++ + K+ T I+        +  RV Q+R  IE A  DY+REKL ER+AKL+GGVAVI+VGA TE E+K +++   DAL+A
Sbjct:  165 AMDKVGKEGVITVEDGKSLDSELDVVEGMQFDRGYLSPYFINNPEKQAALLDNPFVLLYDKKISNIRDLLPTLEQVAKSGRPLLIISEDVEGEALATLVVNTIRGILKVVAVKAPGFGDRRKAMLEDIAILTGGKVIAEEVGMSLEKVTLADLGSAKRIEVGKENTIIIDGAGAAADIEARVKQVRVQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHA 402          
BLAST of FC920647 vs. ExPASy Swiss-Prot
Match: CH601_BRASB (60 kDa chaperonin 1 OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=groL1 PE=3 SV=1)

HSP 1 Score: 253.447 bits (646), Expect = 8.620e-67
Identity = 129/238 (54.20%), Postives = 175/238 (73.53%), Query Frame = 1
Query:    1 AMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKRRSES-RDALNA 711
            AM KVG  GV+T+EE KS E  + +VEGM+FDRGY+SPYFVT++EKM  E ++  +LL +KK++  + ++ VLE  ++   P+LIIAED+E EALATLVVN+LRG LK+AA+KAPGFG+R+   L+DIAILTGG +I D++G+ L+ V  ++LG A KVV+ K+ TTIV     +  +  RV QI+  IE    DY+REKL ER+AKL+GGVAVI+VG  TE E+K + +   DALNA
Sbjct:  165 AMQKVGNEGVITVEENKSLETEVDIVEGMKFDRGYLSPYFVTNAEKMTAELDDVYVLLHEKKLSGLQAMLPVLEAVVQSGRPLLIIAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRKAMLEDIAILTGGQLISDDLGMKLENVTIKMLGRAKKVVIDKENTTIVNGAGKKADIEARVGQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEIEVKEKKDRVEDALNA 402          
BLAST of FC920647 vs. ExPASy Swiss-Prot
Match: CH601_BRAJA (60 kDa chaperonin 1 OS=Bradyrhizobium japonicum GN=groL1 PE=2 SV=3)

HSP 1 Score: 253.447 bits (646), Expect = 8.620e-67
Identity = 125/233 (53.65%), Postives = 172/233 (73.82%), Query Frame = 1
Query:    1 AMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKRRSESRD 699
            AM KVG  GV+T+EE KS +  L VVEGMQFDRGY SPYFVT++EKM VE+E+  +L+ +KK++  + ++ +LE  ++   P+L++AED+E EALATLVVN+LRG LK+AA+KAPGFG+R+   L+DIAILTGG  I +++G+ L+ V  ++LG A KVV+ K+ TTIV    ++  +  RV QI+  IE    DY+REKL ER+AKL+GGVAVI+VG  TE E+K R +  D
Sbjct:  165 AMQKVGNDGVITVEEAKSLDTELEVVEGMQFDRGYASPYFVTNAEKMRVEFEDPYILIHEKKLSTLQSMLPLLEAVVQSGKPLLVVAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRKAMLEDIAILTGGQAISEDLGIKLENVTLKMLGRAKKVVIDKENTTIVNGAGSKKDIEARVTQIKMQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKERKDRVD 397          
BLAST of FC920647 vs. ExPASy Swiss-Prot
Match: CH60_VEREI (60 kDa chaperonin OS=Verminephrobacter eiseniae (strain EF01-2) GN=groL PE=3 SV=1)

HSP 1 Score: 253.062 bits (645), Expect = 1.126e-66
Identity = 130/238 (54.62%), Postives = 172/238 (72.27%), Query Frame = 1
Query:    1 AMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELK-RRSESRDALNA 711
            AM KVG+ GV+T+E+GKS E+ L VVEGMQFDRGY+SPYF+ + +K A   +N  +LL DKKI+N RDL+  LE   +   P+L+IAE++E EALATLVVN +RG LK+ A+KAPGFG+R+   L+DIAILTGG VI +EVGL L+KV    LG A ++ + K+ T I+        +  RV Q+R  IE A  DY+REKL ER+AKL+GGVAVI+VGA TE E+K +++   DAL+A
Sbjct:  165 AMDKVGKEGVITVEDGKSLESELDVVEGMQFDRGYLSPYFINNPDKQAALLDNPFVLLFDKKISNIRDLLPTLEQVAKAGRPLLVIAEEVEGEALATLVVNTIRGILKVVAVKAPGFGDRRKAMLEDIAILTGGKVIAEEVGLTLEKVTLADLGQAKRIEVGKENTIIIDGAGAAGDIEARVKQVRVQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHA 402          
BLAST of FC920647 vs. ExPASy Swiss-Prot
Match: CH60_STRCV (60 kDa chaperonin OS=Streptococcus constellatus GN=groL PE=3 SV=1)

HSP 1 Score: 253.062 bits (645), Expect = 1.126e-66
Identity = 129/238 (54.20%), Postives = 176/238 (73.95%), Query Frame = 1
Query:    1 AMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKR-RSESRDALNA 711
            AM KVG  GV+T+EE K  E  L VVEGMQFDRGY+S Y VTD+EKM  + +N  +L+ DKKI+N ++++ +LE+ ++ + P+LIIA+D++ EAL TLV+NK+RG   + A+KAPGFG+R+   L+DIAILTGGTVI +++GL L     E LG ASKV + KD+T IV      +A++ RVA I++ IE+A  ++++EKL ER+AKLSGGVAVI+VGA TETELK  +    DALNA
Sbjct:  163 AMEKVGNDGVITIEESKGMETELDVVEGMQFDRGYLSQYMVTDNEKMVADLDNPYILITDKKISNIQEILPLLENILKTSRPLLIIADDVDGEALPTLVLNKIRGTFNVVAVKAPGFGDRRKAMLEDIAILTGGTVITEDLGLELKDATIEALGQASKVTVDKDSTVIVEGSGAAEAIANRVAVIKSQIESATSEFDKEKLQERLAKLSGGVAVIKVGAATETELKEMKLRIEDALNA 400          
BLAST of FC920647 vs. ExPASy Swiss-Prot
Match: CH60_LEGPC (60 kDa chaperonin OS=Legionella pneumophila (strain Corby) GN=groL PE=3 SV=1)

HSP 1 Score: 253.062 bits (645), Expect = 1.126e-66
Identity = 126/238 (52.94%), Postives = 176/238 (73.95%), Query Frame = 1
Query:    1 AMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELK-RRSESRDALNA 711
            AM KVG+ GV+T+E+G   EN L VVEGMQFDRGYISPYF+ + + M+ E E+  +LLVDKK+++ R++++VLE   +   P+LIIAED+E EALATLVVN +RG +K+ A+KAPGFG+R+   L DIAILT G VI +E+G +L+    E LG+A ++V+TK+ TT++        ++ R+AQIR  +E    DY+REKL ER+AKL+GGVAVI+VGA TE E+K +++   DAL+A
Sbjct:  164 AMEKVGKEGVITVEDGNGLENELSVVEGMQFDRGYISPYFINNQQNMSCELEHPFILLVDKKVSSIREMLSVLEGVAKSGRPLLIIAEDVEGEALATLVVNNMRGIVKVCAVKAPGFGDRRKAMLQDIAILTKGQVISEEIGKSLEGATLEDLGSAKRIVVTKENTTVIDGEGKATEINARIAQIRAQMEETTSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHA 401          
BLAST of FC920647 vs. ExPASy Swiss-Prot
Match: CH60_GRABC (60 kDa chaperonin OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=groL PE=3 SV=1)

HSP 1 Score: 253.062 bits (645), Expect = 1.126e-66
Identity = 130/238 (54.62%), Postives = 172/238 (72.27%), Query Frame = 1
Query:    1 AMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKRRSES-RDALNA 711
            AM KVG  GV+T+EE K  +  L VVEGMQFDRGY+SPYF+T+ EKM  E +N  +L+ +KK+   + L+ +LE  ++   P+LIIAED+E EALATLVVNKLRG LKIAA+KAPGFG+R+   L+DIAILTGGTVI +++G+ L+ V  + LG A +V++ K+ TTIV    + D +  R +QIR   E    DY+REKL ER+AKL+GGVAVI+VG  TE E+K R +   DAL+A
Sbjct:  165 AMQKVGNEGVITVEEAKGIQTELDVVEGMQFDRGYVSPYFITNPEKMIAELDNPYILIHEKKLAQLQPLLPLLESVVQSGRPLLIIAEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKAMLEDIAILTGGTVISEDLGIKLETVTLQQLGTAKRVLIEKENTTIVEGAGSPDDIKGRCSQIRAQAEETTSDYDREKLQERLAKLAGGVAVIRVGGSTEVEVKERKDRVDDALHA 402          
BLAST of FC920647 vs. ExPASy Swiss-Prot
Match: CH60_STRM5 (60 kDa chaperonin OS=Stenotrophomonas maltophilia (strain R551-3) GN=groL PE=3 SV=1)

HSP 1 Score: 252.677 bits (644), Expect = 1.470e-66
Identity = 127/238 (53.36%), Postives = 177/238 (74.37%), Query Frame = 1
Query:    1 AMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKRRSES-RDALNA 711
            AM +VG+ GV+T+EEG   +N L VV+GMQFDRGY+SPYF+ + +    + ++  +LL DKKI+N RDL+ VLE   +   P+LI+AE++E EALATLVVN +RG +K+ A+KAPGFG+R+   L+D+A+LTGGTVI +EVGL+L+K   + LG A KV ++K+ TTI+     + AV  RVAQI+T I++   DY+REKL ER+AKL+GGVAVI+VGA TE E+K + +   DAL+A
Sbjct:  165 AMKEVGKEGVITVEEGSGLDNELDVVKGMQFDRGYLSPYFINNQQSQTADLDDPFILLHDKKISNVRDLLPVLEGVAKAGKPLLIVAEEVEGEALATLVVNTIRGIVKVVAVKAPGFGDRRKAMLEDMAVLTGGTVISEEVGLSLEKATIKDLGRAKKVQVSKENTTIIDGVGDKAAVDSRVAQIKTQIQDTSSDYDREKLQERVAKLAGGVAVIKVGASTEIEMKEKKDRVDDALHA 402          
BLAST of FC920647 vs. ExPASy Swiss-Prot
Match: CH60_STRGC (60 kDa chaperonin OS=Streptococcus gordonii (strain Challis / ATCC 35105 / CH1 / DL1 / V288) GN=groL PE=3 SV=1)

HSP 1 Score: 252.677 bits (644), Expect = 1.470e-66
Identity = 130/238 (54.62%), Postives = 174/238 (73.11%), Query Frame = 1
Query:    1 AMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKR-RSESRDALNA 711
            AM KVG  GV+T+EE K  E  L VVEGMQFDRGY+S Y VTDSEKM  + +N  +L+ DKKI+N ++++ +LE  ++   P+LIIA+D++ EAL TLV+NK+RG   + A+KAPGFG+R+   L+DIAILTGGTVI +++GL L     E LG ASKV + KD+T IV      +A++ RVA I++ IE+A  ++++EKL ER+AKLSGGVAVI+VGA TETELK  +    DALNA
Sbjct:  163 AMEKVGNDGVITIEESKGMETELDVVEGMQFDRGYLSQYMVTDSEKMVADLDNPYILITDKKISNIQEILPLLESILKTNRPLLIIADDVDGEALPTLVLNKIRGTFNVVAVKAPGFGDRRKAMLEDIAILTGGTVITEDLGLELKDATIEALGQASKVTVDKDSTVIVEGAGNPEAIANRVAVIKSQIESATSEFDKEKLQERLAKLSGGVAVIKVGAATETELKEMKLRIEDALNA 400          
BLAST of FC920647 vs. ExPASy Swiss-Prot
Match: CH60_METI4 (60 kDa chaperonin OS=Methylacidiphilum infernorum (isolate V4) GN=groL PE=3 SV=1)

HSP 1 Score: 252.677 bits (644), Expect = 1.470e-66
Identity = 128/238 (53.78%), Postives = 174/238 (73.11%), Query Frame = 1
Query:    1 AMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELK-RRSESRDALNA 711
            A+ KVG+ G VT+EE K  E  L VVEGMQFDRGYISPYFVT++E++    EN  +L+ +KKI+N +DL+ +LE   +   P+LIIAED+E EALATLVVNKLRG L++ A+KAPGFG+R+   L+DIAILTGG  + +++G+ L+ V  E LG A ++++ K+ TTI+    ++  +  R+ QIR  IE    DY+REKL ER+AKL+GGVAVI VGA TETELK +++   DAL+A
Sbjct:  165 ALDKVGKDGTVTVEEAKHIETTLEVVEGMQFDRGYISPYFVTNAEELEAVLENAYILIHEKKISNLKDLLPLLEKIAKAGRPLLIIAEDVEGEALATLVVNKLRGTLQVCAVKAPGFGDRRKAMLEDIAILTGGRCLTEDLGIKLENVQLEDLGRAKRIIVEKENTTIIEGSGSRSEIQGRINQIRRQIEETTSDYDREKLQERLAKLAGGVAVIHVGAATETELKEKKARVEDALHA 402          
The following BLAST results are available for this feature:
BLAST of FC920647 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH601_RHOFD8.620e-6754.6260 kDa chaperonin 1 OS=Rhodoferax ferrireducens (s... [more]
CH601_BRASB8.620e-6754.2060 kDa chaperonin 1 OS=Bradyrhizobium sp. (strain ... [more]
CH601_BRAJA8.620e-6753.6560 kDa chaperonin 1 OS=Bradyrhizobium japonicum GN... [more]
CH60_VEREI1.126e-6654.6260 kDa chaperonin OS=Verminephrobacter eiseniae (s... [more]
CH60_STRCV1.126e-6654.2060 kDa chaperonin OS=Streptococcus constellatus GN... [more]
CH60_LEGPC1.126e-6652.9460 kDa chaperonin OS=Legionella pneumophila (strai... [more]
CH60_GRABC1.126e-6654.6260 kDa chaperonin OS=Granulibacter bethesdensis (s... [more]
CH60_STRM51.470e-6653.3660 kDa chaperonin OS=Stenotrophomonas maltophilia ... [more]
CH60_STRGC1.470e-6654.6260 kDa chaperonin OS=Streptococcus gordonii (strai... [more]
CH60_METI41.470e-6653.7860 kDa chaperonin OS=Methylacidiphilum infernorum ... [more]

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Properties
Property NameValue
Genbank descriptionC32011C02EF RVDevelop1 Citrus clementina cDNA clone C32011C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920647 ID=FC920647; Name=FC920647; organism=Citrus clementina; type=EST; length=718bp
GCCATGAGTAAAGTGGGACGTACGGGTGTGGTGACCCTTGAAGAGGGAAA
AAGTGCTGAGAATATGCTCTATGTTGTTGAGGGAATGCAATTTGATCGTG
GTTATATTTCTCCCTACTTCGTCACTGATAGTGAGAAAATGGCAGTTGAA
TATGAGAACTGCAAGTTGCTTCTTGTGGATAAAAAGATTACCAATGCAAG
GGACCTTATCAACGTTTTGGAAGATGCGATTAGAGGTGCATACCCAATTT
TGATTATTGCAGAAGATATTGAGCAAGAAGCACTGGCAACTCTTGTCGTG
AACAAGCTGAGAGGTGCATTGAAGATTGCTGCTCTTAAAGCTCCTGGTTT
TGGAGAGCGCAAGAGCCAGTACCTTGACGACATTGCTATTTTGACTGGAG
GAACTGTAATCAGAGATGAGGTGGGACTTGCCTTGGACAAAGTTGGCAAG
GAGGTCCTAGGTAATGCTTCTAAAGTTGTGCTCACAAAGGATACCACCAC
CATTGTGGGGGATGGCAGCACCCAGGATGCAGTGAGCAAACGAGTGGCGC
AAATCAGAACTCTAATTGAGAACGCTGAGCAAGACTATGAAAGGGAGAAG
CTTAATGAAAGAATTGCTAAACTGTCAGGTGGTGTTGCTGTCATACAGGT
TGGAGCTCAAACTGAGACAGAGCTTAAGAGAAGAAGTGAGAGTCGAGATG
CTCTTAATGCACAAGCTG
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