FC920661

Overview
NameFC920661
Unique NameFC920661
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length679
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920661 vs. ExPASy Swiss-Prot
Match: RIR4_YEAST (Ribonucleoside-diphosphate reductase small chain 2 OS=Saccharomyces cerevisiae GN=RNR4 PE=1 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.450e-44
Identity = 88/203 (43.35%), Postives = 134/203 (66.01%), Query Frame = 1
Query:   73 EEPLLAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWIDGSET-FAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGITFSNELISRDEGLHCD 678
            +E LL  N  RF MFPI+Y +IW  YKK EASFWTAEE++L++D   ++ LT D+K ++ ++LA   +SD +V + L   F  ++Q  E ++FYGFQI +ENI+SE+YS++++ + KD  +   LF  I  +P V  KA +   WI   ++ +AERL+AFA  EGIF +G++ ++FWL  + +MPG+  +N  I RD G + D
Sbjct:   24 DEILLMENSRRFVMFPIKYHEIWAAYKKVEASFWTAEEIELAKDTEDFQKLTDDQKTYIGNLLALSISSDNLVNKYLIENFSAQLQNPEGKSFYGFQIMMENIYSEVYSMMVDAFFKD-PKNIPLFKEIANLPEVKHKAAFIERWISNDDSLYAERLVAFAAKEGIFQAGNYASMFWLTDKKIMPGLAMANRNICRDRGAYTD 225          
BLAST of FC920661 vs. ExPASy Swiss-Prot
Match: RIR2_OSHV1 (Ribonucleoside-diphosphate reductase small chain OS=Ostreid herpesvirus 1 GN=ORF20 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.955e-17
Identity = 61/195 (31.28%), Postives = 92/195 (47.18%), Query Frame = 1
Query:  100 DRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAI---ETVPCVAKKATWALNWID-GSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGITFSNELISRDEGLH 672
            D   + P  Y Q+ +   K E+S W   E+D   D+  WE ++ +E+  V  VLAFFA  D +V + +A  F  E  + E + F  +Q   E +H  +Y+  L+  +KD      L +A    E  P + KK  W    I   +++  E ++   C E I F+ SF AI    +   M  +   NE I RDE LH
Sbjct:   70 DHALLKPAVYQQLRDFATKMESSSWQQTEIDAESDIPTWEQISENERDCVRKVLAFFAVGDTLVKDRIA-IFADEFPLPECKDFIDWQTVNEGVHQRVYNNYLDALVKDKIYLADLVNAYKDPEFAP-IKKKVDWLGKIISVENDSRGEMVVGQVCTEAIMFAASF-AILLKFRAPYMRALVLGNEFIRRDETLH 261          
BLAST of FC920661 vs. ExPASy Swiss-Prot
Match: RIR2_EBVG (Ribonucleoside-diphosphate reductase small chain OS=Epstein-Barr virus (strain GD1) GN=BaRF1 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.686e-16
Identity = 53/168 (31.55%), Postives = 83/168 (49.40%), Query Frame = 1
Query:  172 WTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIK-DSDEKNRLFHAIETVPCVAKKATWALNWIDGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGITFSNELISRDEGLH 672
            W A  + L++D    + L   +  F   +  F A ++ +V  N+    +T  +  +   +Y  Q A+EN+H E Y+ +L      D    N    AI     +  K +W  + +  + T  E+++ F  +EGIFF  SF +I  L+ RGLMPGI  +N  ISRDE LH
Sbjct:   25 WFAAHIVLTKDCGCLKLLNERDLEFYKFLFTFLAMAEKLVNFNI-DELVTSFESHDIDHYYTEQKAMENVHGETYANILNMLFDGDRAAMNAYAEAIMADEALQAKISWLRDKVAAAVTLPEKILVFLLIEGIFFISSFYSIALLRVRGLMPGICLANNYISRDELLH 191          
BLAST of FC920661 vs. ExPASy Swiss-Prot
Match: RIR2_EBVB9 (Ribonucleoside-diphosphate reductase small chain OS=Epstein-Barr virus (strain B95-8) GN=BaRF1 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.686e-16
Identity = 53/168 (31.55%), Postives = 83/168 (49.40%), Query Frame = 1
Query:  172 WTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIK-DSDEKNRLFHAIETVPCVAKKATWALNWIDGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGITFSNELISRDEGLH 672
            W A  + L++D    + L   +  F   +  F A ++ +V  N+    +T  +  +   +Y  Q A+EN+H E Y+ +L      D    N    AI     +  K +W  + +  + T  E+++ F  +EGIFF  SF +I  L+ RGLMPGI  +N  ISRDE LH
Sbjct:   25 WFAAHIVLTKDCGCLKLLNERDLEFYKFLFTFLAMAEKLVNFNI-DELVTSFESHDIDHYYTEQKAMENVHGETYANILNMLFDGDRAAMNAYAEAIMADEALQAKISWLRDKVAAAVTLPEKILVFLLIEGIFFISSFYSIALLRVRGLMPGICLANNYISRDELLH 191          
BLAST of FC920661 vs. ExPASy Swiss-Prot
Match: RIR2_EBVA8 (Ribonucleoside-diphosphate reductase small chain OS=Epstein-Barr virus (strain AG876) GN=BaRF1 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.686e-16
Identity = 53/168 (31.55%), Postives = 83/168 (49.40%), Query Frame = 1
Query:  172 WTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIK-DSDEKNRLFHAIETVPCVAKKATWALNWIDGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGITFSNELISRDEGLH 672
            W A  + L++D    + L   +  F   +  F A ++ +V  N+    +T  +  +   +Y  Q A+EN+H E Y+ +L      D    N    AI     +  K +W  + +  + T  E+++ F  +EGIFF  SF +I  L+ RGLMPGI  +N  ISRDE LH
Sbjct:   25 WFAAHIVLTKDCGCLKLLNERDLEFYKFLFTFLAMAEKLVNFNI-DELVTSFESHDIDHYYTEQKAMENVHGETYANILNMLFDGDRAAMNAYAEAIMADEALQAKISWLRDKVAAAVTLPEKILVFLLIEGIFFISSFYSIALLRVRGLMPGICLANNYISRDELLH 191          
BLAST of FC920661 vs. ExPASy Swiss-Prot
Match: RIR2_HHV2H (Ribonucleoside-diphosphate reductase small chain OS=Human herpesvirus 2 (strain HG52) GN=UL40 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.072e-15
Identity = 56/198 (28.28%), Postives = 95/198 (47.98%), Query Frame = 1
Query:   85 LAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETV--PCVAKKATWALNWIDGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGITFSNELISRDEGLH 672
            + P P+R+  +  Q P I  +   +  + W   E+    D      L+  E  F   + AF +A+D +V ENL G      +  +   +Y  Q  IE +HS +Y+++      ++D+  R + A  T+  P +  K  W    +   ++  E+ I    +EG+FF+ SF AI +L+   L+     SN+LISRDE +H
Sbjct:   27 VCPTPERY-FYTSQCPDINHLRSLSILNRWLETELVFVGDEEDVSKLSEGELGFYRFLFAFLSAADDLVTENLGG-LSGLFEQKDILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARRAYVA-RTINHPAIRVKVDWLEARVRECDSIPEKFILMILIEGVFFAASFAAIAYLRTNNLLRVTCQSNDLISRDEAVH 221          
BLAST of FC920661 vs. ExPASy Swiss-Prot
Match: RIR2_HHV23 (Ribonucleoside-diphosphate reductase small chain OS=Human herpesvirus 2 (strain 333) PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.072e-15
Identity = 56/198 (28.28%), Postives = 95/198 (47.98%), Query Frame = 1
Query:   85 LAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETV--PCVAKKATWALNWIDGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGITFSNELISRDEGLH 672
            + P P+R+  +  Q P I  +   +  + W   E+    D      L+  E  F   + AF +A+D +V ENL G      +  +   +Y  Q  IE +HS +Y+++      ++D+  R + A  T+  P +  K  W    +   ++  E+ I    +EG+FF+ SF AI +L+   L+     SN+LISRDE +H
Sbjct:   27 VCPTPERY-FYTSQCPDINHLRSLSILNRWLETELVFVGDEEDVSKLSEGELGFYRFLFAFLSAADDLVTENLGG-LSGLFEQKDILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARRAYVA-RTINHPAIRVKVDWLEARVRECDSIPEKFILMILIEGVFFAASFAAIAYLRTNNLLRVTCQSNDLISRDEAVH 221          
BLAST of FC920661 vs. ExPASy Swiss-Prot
Match: RIR2_HHV11 (Ribonucleoside-diphosphate reductase small chain OS=Human herpesvirus 1 (strain 17) GN=UL40 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.075e-15
Identity = 57/196 (29.08%), Postives = 94/196 (47.96%), Query Frame = 1
Query:   91 PNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETV--PCVAKKATWALNWIDGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGITFSNELISRDEGLH 672
            P+P+R+  +  Q P I  +   +  + W   E+    D      L+  E  F   + AF +A+D +V ENL G      +  +   +Y  Q  IE +HS +Y+++      ++D+  R + A  T+  P +  K  W    +    +  E+ I    +EGIFF+ SF AI +L+   L+     SN+LISRDE +H
Sbjct:   32 PDPERY-FYTSQCPDINHLRSLSILNRWLETELVFVGDEEDVSKLSEGELSFYRFLFAFLSAADDLVTENLGG-LSGLFEQKDILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARREYVA-GTINHPAIRAKVDWLEARVRECASVPEKFILMILIEGIFFAASFAAIAYLRTNNLLRVTCQSNDLISRDEAVH 224          
BLAST of FC920661 vs. ExPASy Swiss-Prot
Match: RIR2_VZVO (Ribonucleoside-diphosphate reductase small chain OS=Varicella-zoster virus (strain Oka vaccine) GN=ORF18 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.186e-14
Identity = 53/183 (28.96%), Postives = 88/183 (48.09%), Query Frame = 1
Query:  130 PQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETV--PCVAKKATWALNWIDGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGITFSNELISRDEGLH 672
            P I  +   + ++ W   +  +  D ++ + LT DE  F   +  F +A+D +V  NL G         +   +Y  Q  IE +H+ +YS + +  +   DE  R+ +   T+  P + +K  W    +  + + AE+ I    +EGIFF  SF AI +L+  GL       N+LISRDE +H
Sbjct:   16 PDINNLRALSISNRWLESDFIIEDDYQYLDCLTEDELIFYRFIFTFLSAADDLVNVNL-GSLTQLFSQKDIHHYYIEQECIEVVHARVYSQI-QLMLFRGDESLRVQYVNVTINNPSIQQKVQWLEEKVRDNPSVAEKYILMILIEGIFFVSSFAAIAYLRNNGLFVVTCQFNDLISRDEAIH 196          
BLAST of FC920661 vs. ExPASy Swiss-Prot
Match: RIR2_VZVD (Ribonucleoside-diphosphate reductase small chain OS=Varicella-zoster virus (strain Dumas) GN=ORF18 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.186e-14
Identity = 53/183 (28.96%), Postives = 88/183 (48.09%), Query Frame = 1
Query:  130 PQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETV--PCVAKKATWALNWIDGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGITFSNELISRDEGLH 672
            P I  +   + ++ W   +  +  D ++ + LT DE  F   +  F +A+D +V  NL G         +   +Y  Q  IE +H+ +YS + +  +   DE  R+ +   T+  P + +K  W    +  + + AE+ I    +EGIFF  SF AI +L+  GL       N+LISRDE +H
Sbjct:   16 PDINNLRALSISNRWLESDFIIEDDYQYLDCLTEDELIFYRFIFTFLSAADDLVNVNL-GSLTQLFSQKDIHHYYIEQECIEVVHARVYSQI-QLMLFRGDESLRVQYVNVTINNPSIQQKVQWLEEKVRDNPSVAEKYILMILIEGIFFVSSFAAIAYLRNNGLFVVTCQFNDLISRDEAIH 196          
The following BLAST results are available for this feature:
BLAST of FC920661 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
RIR4_YEAST2.450e-4443.35Ribonucleoside-diphosphate reductase small chain 2... [more]
RIR2_OSHV11.955e-1731.28Ribonucleoside-diphosphate reductase small chain O... [more]
RIR2_EBVG3.686e-1631.55Ribonucleoside-diphosphate reductase small chain O... [more]
RIR2_EBVB93.686e-1631.55Ribonucleoside-diphosphate reductase small chain O... [more]
RIR2_EBVA83.686e-1631.55Ribonucleoside-diphosphate reductase small chain O... [more]
RIR2_HHV2H1.072e-1528.28Ribonucleoside-diphosphate reductase small chain O... [more]
RIR2_HHV231.072e-1528.28Ribonucleoside-diphosphate reductase small chain O... [more]
RIR2_HHV114.075e-1529.08Ribonucleoside-diphosphate reductase small chain O... [more]
RIR2_VZVO1.186e-1428.96Ribonucleoside-diphosphate reductase small chain O... [more]
RIR2_VZVD1.186e-1428.96Ribonucleoside-diphosphate reductase small chain O... [more]

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Properties
Property NameValue
Genbank descriptionC32011D06EF RVDevelop1 Citrus clementina cDNA clone C32011D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920661 ID=FC920661; Name=FC920661; organism=Citrus clementina; type=EST; length=679bp
CCAAAGAAATAGAAATCAAACATCTCTCTATTCTCCCGAATTAGTGCGCT
TACCAAAATGCCCTCGATTCCCGAAGAGCCGCTCCTAGCCCCAAATCCCG
ATCGATTTTGCATGTTCCCGATTCAGTACCCACAAATTTGGGAAATGTAC
AAGAAAGCCGAAGCGTCGTTTTGGACTGCTGAGGAAGTTGATCTTTCGCA
AGATCTCCGCCACTGGGAGGCCCTAACCGCTGACGAGAAGCACTTCGTCA
CGCACGTGCTCGCCTTCTTCGCAGCCTCCGACGGCATCGTCCTCGAGAAC
CTCGCCGGAAGGTTCATGACGGAGGTCCAGGTCGCCGAGGCTCGCGCCTT
CTACGGCTTCCAAATCGCCATCGAGAACATCCACTCCGAAATGTACTCGC
TGCTTCTAGAAACTTACATCAAAGACTCCGACGAAAAGAACCGTCTCTTT
CACGCCATCGAGACGGTTCCCTGCGTCGCAAAGAAAGCCACGTGGGCGTT
AAATTGGATCGACGGCTCGGAGACTTTCGCGGAGAGATTAATCGCGTTTG
CTTGCGTGGAGGGGATTTTCTTCTCAGGGAGTTTTTGCGCGATATTTTGG
CTCAAAAAGCGCGGGTTAATGCCGGGGATTACATTCTCAAACGAGTTGAT
CTCGCGAGATGAGGGTCTCCACTGCGATT
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