FC920663

Overview
NameFC920663
Unique NameFC920663
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length719
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig378 contig Ccv1_Contig378:50..769. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920663 vs. ExPASy Swiss-Prot
Match: PRDX2_MOUSE (Peroxiredoxin-2 OS=Mus musculus GN=Prdx2 PE=1 SV=3)

HSP 1 Score: 174.096 bits (440), Expect = 6.647e-43
Identity = 85/127 (66.93%), Postives = 99/127 (77.95%), Query Frame = 2
Query:  311 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIID 691
            +G +APDF A AV D  F  +KLSDY GK YV+LFFYPLDFTFVCPTEI AFSD   +F KL  E+LGVS DS F+HLAW+ T RK GGLG L  PL+AD+TKS+S++YGVL  D+GIA RGLFIID
Sbjct:    8 IGKSAPDFTATAVVDGAFKEIKLSDYRGK-YVVLFFYPLDFTFVCPTEIIAFSDHAEDFRKLGCEVLGVSVDSQFTHLAWINTPRKEGGLGPLNIPLLADVTKSLSQNYGVLKNDEGIAYRGLFIID 133          
BLAST of FC920663 vs. ExPASy Swiss-Prot
Match: PRDX2_RAT (Peroxiredoxin-2 OS=Rattus norvegicus GN=Prdx2 PE=1 SV=3)

HSP 1 Score: 171.785 bits (434), Expect = 3.299e-42
Identity = 84/127 (66.14%), Postives = 97/127 (76.38%), Query Frame = 2
Query:  311 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIID 691
            +G  APDF   AV D  F  +KLSDY GK YV+LFFYPLDFTFVCPTEI AFSD   +F KL  E+LGVS DS F+HLAW+ T RK GGLG L  PL+AD+TKS+S++YGVL  D+GIA RGLFIID
Sbjct:    8 IGKPAPDFTGTAVVDGAFKEIKLSDYRGK-YVVLFFYPLDFTFVCPTEIIAFSDHAEDFRKLGCEVLGVSVDSQFTHLAWINTPRKEGGLGPLNIPLLADVTKSLSQNYGVLKNDEGIAYRGLFIID 133          
BLAST of FC920663 vs. ExPASy Swiss-Prot
Match: PRDX2_CRIGR (Peroxiredoxin-2 OS=Cricetulus griseus GN=PRDX2 PE=2 SV=3)

HSP 1 Score: 171.014 bits (432), Expect = 5.627e-42
Identity = 84/127 (66.14%), Postives = 98/127 (77.17%), Query Frame = 2
Query:  311 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIID 691
            +G  APDF A AV D  F  VKLSDY GK YV+LFFYPLDFTFVCPTEI AFS+   +F KL  E+LGVS DS F+HLAW+ T RK GGLG L  PL+AD+T+S+S++YGVL  D+GIA RGLFIID
Sbjct:    8 IGKPAPDFTATAVVDGAFKEVKLSDYRGK-YVVLFFYPLDFTFVCPTEIIAFSNHAEDFRKLGCEVLGVSVDSQFTHLAWINTPRKEGGLGPLNIPLLADVTRSLSENYGVLKTDEGIAYRGLFIID 133          
BLAST of FC920663 vs. ExPASy Swiss-Prot
Match: PRDX2_PONAB (Peroxiredoxin-2 OS=Pongo abelii GN=PRDX2 PE=2 SV=3)

HSP 1 Score: 170.244 bits (430), Expect = 9.598e-42
Identity = 84/127 (66.14%), Postives = 97/127 (76.38%), Query Frame = 2
Query:  311 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIID 691
            +G  APDF A AV D  F  VKLSDY GK YV+LFFYPLDFTFVCPTEI AFS+R  +F KL  E+LGVS DS F+HLAW+ T RK GGLG L  PL+AD+T+ +S+ YGVL  D+GIA RGLFIID
Sbjct:    8 IGKPAPDFKATAVVDGAFKEVKLSDYKGK-YVVLFFYPLDFTFVCPTEIIAFSNRAEDFHKLGCEVLGVSVDSQFTHLAWINTPRKEGGLGPLNIPLLADVTRRLSEDYGVLKTDEGIAYRGLFIID 133          
BLAST of FC920663 vs. ExPASy Swiss-Prot
Match: PRDX2_MACFA (Peroxiredoxin-2 OS=Macaca fascicularis GN=PRDX2 PE=2 SV=3)

HSP 1 Score: 170.244 bits (430), Expect = 9.598e-42
Identity = 84/127 (66.14%), Postives = 97/127 (76.38%), Query Frame = 2
Query:  311 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIID 691
            +G  APDF A AV D  F  VKLSDY GK YV+LFFYPLDFTFVCPTEI AFS+R  +F KL  E+LGVS DS F+HLAW+ T RK GGLG L  PL+AD+T+ +S+ YGVL  D+GIA RGLFIID
Sbjct:    8 IGKPAPDFKATAVVDGAFKEVKLSDYKGK-YVVLFFYPLDFTFVCPTEIIAFSNRAEDFRKLGCEVLGVSVDSQFTHLAWINTPRKEGGLGPLNIPLLADVTRRLSEDYGVLKTDEGIAYRGLFIID 133          
BLAST of FC920663 vs. ExPASy Swiss-Prot
Match: PRDX2_HUMAN (Peroxiredoxin-2 OS=Homo sapiens GN=PRDX2 PE=1 SV=5)

HSP 1 Score: 170.244 bits (430), Expect = 9.598e-42
Identity = 84/127 (66.14%), Postives = 97/127 (76.38%), Query Frame = 2
Query:  311 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIID 691
            +G  APDF A AV D  F  VKLSDY GK YV+LFFYPLDFTFVCPTEI AFS+R  +F KL  E+LGVS DS F+HLAW+ T RK GGLG L  PL+AD+T+ +S+ YGVL  D+GIA RGLFIID
Sbjct:    8 IGKPAPDFKATAVVDGAFKEVKLSDYKGK-YVVLFFYPLDFTFVCPTEIIAFSNRAEDFRKLGCEVLGVSVDSQFTHLAWINTPRKEGGLGPLNIPLLADVTRRLSEDYGVLKTDEGIAYRGLFIID 133          
BLAST of FC920663 vs. ExPASy Swiss-Prot
Match: PRDX_ASCSU (Peroxiredoxin OS=Ascaris suum PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 5.266e-40
Identity = 79/128 (61.72%), Postives = 96/128 (75.00%), Query Frame = 2
Query:  308 LVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIID 691
            ++G  AP+F A AV D +F ++ LSDY GK YV+LFFYP+DFTFVCPTEI AFS+   EF+KL  E+L  STDS FSHLAW+ T RK GGLG++K P+I+D    IS+ YGVL  D GIA RGLFIID
Sbjct:    5 MIGKPAPEFTATAVVDGDFKSISLSDYKGK-YVVLFFYPMDFTFVCPTEIIAFSEHVGEFKKLGVEVLAASTDSQFSHLAWINTPRKQGGLGEMKIPIISDNNHQISRDYGVLKEDDGIAYRGLFIID 131          
BLAST of FC920663 vs. ExPASy Swiss-Prot
Match: PRDX1_CHICK (Peroxiredoxin-1 OS=Gallus gallus GN=PRDX1 PE=1 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 8.983e-40
Identity = 80/130 (61.54%), Postives = 99/130 (76.15%), Query Frame = 2
Query:  311 VGNTAPDFAAEAVF-DQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKE 697
            +G  APDF A AV  D +F ++KLSDY GK YV+ FFYPLDFTFVCPTEI A+SDR  EF+K+N EI+G S DS F HLAW+ T +K GGLG +K PL++D  + I+K YGVL  D+GIA RGLFIID++
Sbjct:    8 IGKPAPDFTATAVMPDGQFKDIKLSDYRGK-YVVFFFYPLDFTFVCPTEIIAYSDRADEFKKINCEIIGASVDSHFCHLAWINTPKKQGGLGTMKIPLVSDTKRVIAKDYGVLKEDEGIAYRGLFIIDEK 136          
BLAST of FC920663 vs. ExPASy Swiss-Prot
Match: YKUU_BACSU (Thioredoxin-like protein ykuU OS=Bacillus subtilis GN=ykuU PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 5.823e-39
Identity = 78/132 (59.09%), Postives = 98/132 (74.24%), Query Frame = 2
Query:  308 LVGNTAPDFAAEAVF-DQEFINVKLSDYI-GKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKE 697
            +VG  AP F  EAV   +EF  V L + +   K+ +LFFYP+DFTFVCPTEITA SDRY EFE L+ E++GVSTD++ +HLAW+ TDRK  GLG LKYPL AD    +S+ YGVLI ++G+ALRGLFII+ E
Sbjct:    5 MVGKQAPRFEMEAVLASKEFGKVSLEENMKNDKWTVLFFYPMDFTFVCPTEITAMSDRYDEFEDLDAEVIGVSTDTIHTHLAWINTDRKENGLGQLKYPLAADTNHEVSREYGVLIEEEGVALRGLFIINPE 136          
BLAST of FC920663 vs. ExPASy Swiss-Prot
Match: PRDX1_GECJA (Peroxiredoxin-1 OS=Gecko japonicus GN=PRDX1 PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 7.605e-39
Identity = 78/128 (60.94%), Postives = 95/128 (74.22%), Query Frame = 2
Query:  311 VGNTAPDFAAEAVF-DQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIID 691
            +G  APDF A AV  D +F  +KLSDY GK YV+LFFYPLDFTFVCPTEI AFSDR  EF K+N E++G S DS F HLAW+ T +K GGLG +  PL++D  + I+K YG+L  D+GI+ RGLFIID
Sbjct:    8 IGKLAPDFQATAVMPDGQFKEIKLSDYKGK-YVVLFFYPLDFTFVCPTEIIAFSDRSEEFRKINCEVIGASVDSHFCHLAWINTPKKQGGLGSMHIPLVSDTKRVIAKDYGILKEDEGISYRGLFIID 134          
The following BLAST results are available for this feature:
BLAST of FC920663 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 130
Match NameE-valueIdentityDescription
PRDX2_MOUSE6.647e-4366.93Peroxiredoxin-2 OS=Mus musculus GN=Prdx2 PE=1 SV=3[more]
PRDX2_RAT3.299e-4266.14Peroxiredoxin-2 OS=Rattus norvegicus GN=Prdx2 PE=1... [more]
PRDX2_CRIGR5.627e-4266.14Peroxiredoxin-2 OS=Cricetulus griseus GN=PRDX2 PE=... [more]
PRDX2_PONAB9.598e-4266.14Peroxiredoxin-2 OS=Pongo abelii GN=PRDX2 PE=2 SV=3[more]
PRDX2_MACFA9.598e-4266.14Peroxiredoxin-2 OS=Macaca fascicularis GN=PRDX2 PE... [more]
PRDX2_HUMAN9.598e-4266.14Peroxiredoxin-2 OS=Homo sapiens GN=PRDX2 PE=1 SV=5[more]
PRDX_ASCSU5.266e-4061.72Peroxiredoxin OS=Ascaris suum PE=2 SV=1[more]
PRDX1_CHICK8.983e-4061.54Peroxiredoxin-1 OS=Gallus gallus GN=PRDX1 PE=1 SV=... [more]
YKUU_BACSU5.823e-3959.09Thioredoxin-like protein ykuU OS=Bacillus subtilis... [more]
PRDX1_GECJA7.605e-3960.94Peroxiredoxin-1 OS=Gecko japonicus GN=PRDX1 PE=2 S... [more]

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Properties
Property NameValue
Genbank descriptionC32011D09EF RVDevelop1 Citrus clementina cDNA clone C32011D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920663 ID=FC920663; Name=FC920663; organism=Citrus clementina; type=EST; length=719bp
GGCAACAGATAGCCACACTTTGCTTTTCCCCGTTCGTTGACTCCAGCTGA
ACAATAATACAACAACAAAAACAATGGCTTGCTCAGCTGCTTCTGCTGCT
GCCACGGCAACAGCCGCTCTCATTTCCTCTAACCCCAAGGCTTTCTCTTC
TTCCTCAATCTCCCCTTCTCAAAACCTAACCATTCCCCGCTCCTTCTCCG
GCCTCCGCAATCCCCTCCAGTCCCAGGTCCCCCGCCCCGTTTCTCTTTCC
CGCGGGTCCCGTTCTCGCAAGTCCTTCGTTGTCAAAGCATCCGTTGAAAT
ACCACCATTGGTGGGCAACACGGCACCTGATTTTGCTGCAGAGGCTGTTT
TCGATCAAGAGTTCATCAATGTCAAGCTTTCGGATTACATTGGGAAGAAA
TATGTGATTCTCTTTTTCTACCCGTTGGACTTCACATTTGTTTGCCCCAC
AGAAATCACTGCTTTCAGCGACCGATATACTGAATTTGAGAAGCTAAACA
CAGAGATATTGGGTGTCTCAACCGACAGTGTGTTTTCACACTTGGCATGG
GTCCAAACAGACAGAAAGTCAGGTGGTCTTGGTGATTTGAAGTACCCACT
AATTGCTGATATCACCAAATCAATTTCAAAATCCTATGGTGTTCTGATCC
CTGATCAGGGAATTGCATTGAGAGGACTCTTTATTATTGACAAAGAGGAG
TCATCCAGCACTCAACCAT
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