FC920664

Overview
NameFC920664
Unique NameFC920664
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length339
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10212 contig Ccv1_Contig10212:291..629. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_PSESM (Chaperone protein dnaK OS=Pseudomonas syringae pv. tomato GN=dnaK PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.449e-22
Identity = 54/109 (49.54%), Postives = 75/109 (68.81%), Query Frame = 2
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP NT++  KRLIGR+F +  VQ D+++ P+K++        + VN     ++ A  +IS+ +L KM++ AE YLG  +  AV+TVPAYFNDSQRQATKDAG IAGL+V
Sbjct:   61 NPHNTLYAVKRLIGRKFDEQVVQKDIQMVPYKIVKADNGDAWVEVN----GQKMAPPQISAEILKKMKKTAEDYLGEAVTEAVITVPAYFNDSQRQATKDAGRIAGLDV 165          
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_NITWN (Chaperone protein dnaK OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=dnaK PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.449e-22
Identity = 56/110 (50.91%), Postives = 75/110 (68.18%), Query Frame = 2
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVI-AGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP  T+F  KRLIGRR+ D +V+ D +L P+K+  AG  D  +     + + K ++  +IS+  L KM+E AEA+LG  +  AV+TVPAYFND+QRQATKDAG IAGL V
Sbjct:   61 NPERTIFAVKRLIGRRYDDPTVEKDKQLVPYKIAKAGNGDAWV-----EADGKTYSPSQISAFTLQKMKETAEAHLGQKVDQAVITVPAYFNDAQRQATKDAGKIAGLEV 165          
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_METFK (Chaperone protein dnaK OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=dnaK PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.449e-22
Identity = 59/109 (54.13%), Postives = 73/109 (66.97%), Query Frame = 2
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP NT+F  KRLIGRRF +  VQ D+ L P+ +    AD     V  +G++   A  +IS+ VL KM++ AE YLG  +  AV+TVPAYFNDSQRQATKDAG IAGL V
Sbjct:   61 NPKNTLFAVKRLIGRRFDEKEVQKDIGLMPYTITK--ADNGDAWVEVRGQK--LAPPQISAEVLRKMKKTAEDYLGEEVTEAVITVPAYFNDSQRQATKDAGRIAGLEV 165          
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_MARMM (Chaperone protein dnaK OS=Maricaulis maris (strain MCS10) GN=dnaK PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.449e-22
Identity = 52/109 (47.71%), Postives = 75/109 (68.81%), Query Frame = 2
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP  T F  KRLIGR   D +V+ D+ + P+K++   ++   +    +G +K+++  EIS+  L KM+E AE+YLG  ++ AV+TVPAYF+D+QRQATKDAG IAGL V
Sbjct:   61 NPDYTFFAIKRLIGRMMDDPTVKKDIDMVPYKIVPSDSNDAWV----QGRDKKYSPSEISAFTLQKMKETAESYLGEKVEKAVITVPAYFDDAQRQATKDAGKIAGLEV 165          
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_CHRSD (Chaperone protein dnaK OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=dnaK PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.449e-22
Identity = 58/109 (53.21%), Postives = 74/109 (67.89%), Query Frame = 2
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP+NT++  KRLIGR+F D  VQ D+K+ P+ +    AD     V  KG +   A  ++S+ VL KM++ AE YLG  +  AV+TVPAYFNDSQRQATKDAG IAGL V
Sbjct:   61 NPSNTLYAIKRLIGRKFKDDVVQKDIKMVPYTI--AEADNGDAWVEVKGNK--LAPPQVSAEVLKKMKKTAEDYLGEEVTEAVITVPAYFNDSQRQATKDAGRIAGLEV 165          
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_BURPP (Chaperone protein dnaK OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=dnaK PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.449e-22
Identity = 56/109 (51.38%), Postives = 72/109 (66.06%), Query Frame = 2
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP NT++  KRLIGRRF +  VQ D+ L P+K++        I V     +++ A  +IS+  L KM++ AE YLG  +  AV+TVPAYFNDSQRQATKDAG IAGL V
Sbjct:   61 NPKNTLYAVKRLIGRRFEEKEVQKDIALMPYKIMKADNGDAWIEVR----DQKLAPPQISAETLRKMKKTAEDYLGEPVTEAVITVPAYFNDSQRQATKDAGRIAGLEV 165          
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_BORPA (Chaperone protein dnaK OS=Bordetella parapertussis GN=dnaK PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.449e-22
Identity = 57/109 (52.29%), Postives = 74/109 (67.89%), Query Frame = 2
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP NT++  KRLIGR+F + +VQ D+ L P+ ++   AD     V   G  K+ A  ++S+ VL KM++ AE YLG  +  AV+TVPAYFNDSQRQATKDAG IAGL V
Sbjct:   61 NPKNTLYAVKRLIGRKFDEKAVQKDIDLMPYSIVK--ADNGDAWVEVHG--KKLAPPQVSAEVLRKMKKTAEDYLGEEVTEAVITVPAYFNDSQRQATKDAGRIAGLEV 165          
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_XANCP (Chaperone protein dnaK OS=Xanthomonas campestris pv. campestris GN=dnaK PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.892e-22
Identity = 55/109 (50.46%), Postives = 74/109 (67.89%), Query Frame = 2
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP NT +  KRLIGR+F+D  VQ D+   P+ ++A       +  +   + K+ A +EIS+ VL KM++ AE +LG  +  AV+TVPAYFNDSQRQATKDAG IAGL+V
Sbjct:   61 NPKNTFYAVKRLIGRKFTDGEVQKDISHVPYGILAHDNGDAWVQTS---DSKRMAPQEISARVLEKMKKTAEDFLGEKVTEAVITVPAYFNDSQRQATKDAGRIAGLDV 166          
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_XANCB (Chaperone protein dnaK OS=Xanthomonas campestris pv. campestris (strain B100) GN=dnaK PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.892e-22
Identity = 55/109 (50.46%), Postives = 74/109 (67.89%), Query Frame = 2
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP NT +  KRLIGR+F+D  VQ D+   P+ ++A       +  +   + K+ A +EIS+ VL KM++ AE +LG  +  AV+TVPAYFNDSQRQATKDAG IAGL+V
Sbjct:   61 NPKNTFYAVKRLIGRKFTDGEVQKDISHVPYGILAHDNGDAWVQTS---DSKRMAPQEISARVLEKMKKTAEDFLGEKVTEAVITVPAYFNDSQRQATKDAGRIAGLDV 166          
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_XANC8 (Chaperone protein dnaK OS=Xanthomonas campestris pv. campestris (strain 8004) GN=dnaK PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.892e-22
Identity = 55/109 (50.46%), Postives = 74/109 (67.89%), Query Frame = 2
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP NT +  KRLIGR+F+D  VQ D+   P+ ++A       +  +   + K+ A +EIS+ VL KM++ AE +LG  +  AV+TVPAYFNDSQRQATKDAG IAGL+V
Sbjct:   61 NPKNTFYAVKRLIGRKFTDGEVQKDISHVPYGILAHDNGDAWVQTS---DSKRMAPQEISARVLEKMKKTAEDFLGEKVTEAVITVPAYFNDSQRQATKDAGRIAGLDV 166          
The following BLAST results are available for this feature:
BLAST of FC920664 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAK_PSESM1.449e-2249.54Chaperone protein dnaK OS=Pseudomonas syringae pv.... [more]
DNAK_NITWN1.449e-2250.91Chaperone protein dnaK OS=Nitrobacter winogradskyi... [more]
DNAK_METFK1.449e-2254.13Chaperone protein dnaK OS=Methylobacillus flagella... [more]
DNAK_MARMM1.449e-2247.71Chaperone protein dnaK OS=Maricaulis maris (strain... [more]
DNAK_CHRSD1.449e-2253.21Chaperone protein dnaK OS=Chromohalobacter salexig... [more]
DNAK_BURPP1.449e-2251.38Chaperone protein dnaK OS=Burkholderia phytofirman... [more]
DNAK_BORPA1.449e-2252.29Chaperone protein dnaK OS=Bordetella parapertussis... [more]
DNAK_XANCP1.892e-2250.46Chaperone protein dnaK OS=Xanthomonas campestris p... [more]
DNAK_XANCB1.892e-2250.46Chaperone protein dnaK OS=Xanthomonas campestris p... [more]
DNAK_XANC81.892e-2250.46Chaperone protein dnaK OS=Xanthomonas campestris p... [more]

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Properties
Property NameValue
Genbank descriptionC32011D10EF RVDevelop1 Citrus clementina cDNA clone C32011D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920664 ID=FC920664; Name=FC920664; organism=Citrus clementina; type=EST; length=339bp
GGTCGCCATGAACCCCACGAACACCGTCTTTGATGCAAAGAGGTTGATTG
GTAGGAGATTCAGCGATGCATCAGTCCAAGGCGATATGAAGCTATGGCCA
TTTAAGGTGATTGCTGGACCTGCTGACAAGCCCATGATTGGTGTTAACTA
CAAGGGCGAAGAGAAGCAGTTTGCTGCTGAGGAAATCTCGTCTATGGTGC
TCATCAAGATGCGTGAGATTGCTGAGGCTTACCTTGGCGCAACTATTAAG
AATGCAGTCGTTACTGTCCCTGCTTACTTCAATGACTCACAGAGGCAGGC
CACCAAGGATGCCGGTGTCATTGCTGGGCTTAATGTGAT
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