FC920664

Overview
NameFC920664
Unique NameFC920664
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length339
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10212 contig Ccv1_Contig10212:291..629. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: GRP75_PONAB (Stress-70 protein, mitochondrial OS=Pongo abelii GN=HSPA9 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.829e-25
Identity = 59/109 (54.13%), Postives = 74/109 (67.89%), Query Frame = 2 
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP NT +  KRLIGRR+ D  VQ D+K  PFK++        +    +   K ++  +I + VL+KM+E AE YLG T KNAV+TVPAYFNDSQRQATKDAG I+GLNV
Sbjct:  112 NPNNTFYATKRLIGRRYDDPEVQKDIKNVPFKIVRASNGDAWV----EAHGKLYSPSQIGAFVLMKMKETAENYLGHTAKNAVITVPAYFNDSQRQATKDAGQISGLNV 216
[Close]
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: GRP75_HUMAN (Stress-70 protein, mitochondrial OS=Homo sapiens GN=HSPA9 PE=1 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 1.829e-25
Identity = 59/109 (54.13%), Postives = 74/109 (67.89%), Query Frame = 2 
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP NT +  KRLIGRR+ D  VQ D+K  PFK++        +    +   K ++  +I + VL+KM+E AE YLG T KNAV+TVPAYFNDSQRQATKDAG I+GLNV
Sbjct:  112 NPNNTFYATKRLIGRRYDDPEVQKDIKNVPFKIVRASNGDAWV----EAHGKLYSPSQIGAFVLMKMKETAENYLGHTAKNAVITVPAYFNDSQRQATKDAGQISGLNV 216
[Close]
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: GRP75_BOVIN (Stress-70 protein, mitochondrial OS=Bos taurus GN=HSPA9 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.829e-25
Identity = 59/109 (54.13%), Postives = 74/109 (67.89%), Query Frame = 2 
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP NT +  KRLIGRR+ D  VQ D+K  PFK++        +    +   K ++  +I + VL+KM+E AE YLG T KNAV+TVPAYFNDSQRQATKDAG I+GLNV
Sbjct:  112 NPNNTFYATKRLIGRRYDDPEVQKDIKNVPFKIVRASNGDAWV----EAHGKLYSPSQIGAFVLMKMKETAENYLGHTAKNAVITVPAYFNDSQRQATKDAGQISGLNV 216
[Close]
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_SHEPW (Chaperone protein dnaK OS=Shewanella piezotolerans (strain WP3 / JCM 13877) GN=dnaK PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.829e-25
Identity = 64/109 (58.72%), Postives = 76/109 (69.72%), Query Frame = 2 
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NPTNTVF  KRLIGRRF D  VQ D+ + PFK+I   AD     V  +G  K+ A  +IS+ +L KM++ AE YLG  +  AV+TVPAYFNDSQRQATKDAG IAGL V
Sbjct:   60 NPTNTVFAIKRLIGRRFKDDEVQRDVDIMPFKIIG--ADNGDAWVEAQG--KKMAPPQISAEILKKMKKTAEDYLGEEVTEAVITVPAYFNDSQRQATKDAGRIAGLEV 164
[Close]
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_GEOUR (Chaperone protein dnaK OS=Geobacter uraniireducens (strain Rf4) GN=dnaK PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.829e-25
Identity = 61/109 (55.96%), Postives = 81/109 (74.31%), Query Frame = 2 
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP NT+F  KRLIGR+F   +V+ D+ + PFK++   AD     V  +G++  ++A EIS+MVL KM++ AE YLG T+ +AV+TVPAYF+DSQRQATKDAG IAGLNV
Sbjct:   61 NPENTLFAIKRLIGRKFDSEAVKKDIAISPFKIVK--ADNGDAWVEVRGQK--YSAPEISAMVLQKMKKTAEDYLGETVTDAVITVPAYFDDSQRQATKDAGKIAGLNV 165
[Close]
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_RHOS4 (Chaperone protein dnaK OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=dnaK PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 2.388e-25
Identity = 60/109 (55.05%), Postives = 78/109 (71.56%), Query Frame = 2 
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP+NTVF  KRLIGRR  DA V+ D KL P+ ++ G      + V  +GE+  ++  +IS+ +L KM+E AEAYLG ++  AV+TVPAYFND+QRQATKDAG IAGL V
Sbjct:   60 NPSNTVFAVKRLIGRRVGDAEVEKDKKLVPYSIVNGGNGDAWVEV--RGEK--YSPSQISAFILQKMKETAEAYLGESVTQAVITVPAYFNDAQRQATKDAGKIAGLEV 164
[Close]
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_PSEHT (Chaperone protein dnaK OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=dnaK PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 2.388e-25
Identity = 63/109 (57.80%), Postives = 77/109 (70.64%), Query Frame = 2 
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NPTNTVF  KRLIGRRF D  VQ D+ + PFK++   AD     V   GE++  AA +IS+ +L KM++ AE +LG  +  AV+TVPAYFNDSQRQATKDAG IAGL V
Sbjct:   61 NPTNTVFAIKRLIGRRFEDEEVQRDIGIMPFKIVK--ADNGDAWVEAGGEKR--AAPQISAEILKKMKKTAEDFLGEAVTEAVITVPAYFNDSQRQATKDAGRIAGLEV 165
[Close]
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_ACIBY (Chaperone protein dnaK OS=Acinetobacter baumannii (strain AYE) GN=dnaK PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 2.388e-25
Identity = 59/109 (54.13%), Postives = 78/109 (71.56%), Query Frame = 2 
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP NT+F  KRLIGRR+ D +VQ D+ L P+K+I        + VN    +K+ A ++IS+ +L KM++ AE YLG T+  AV+TVPAYFND+QRQATKDAG IAGL+V
Sbjct:   60 NPKNTLFAIKRLIGRRYEDQAVQKDIGLVPYKIIKADNGDAWVEVN----DKKLAPQQISAEILKKMKKTAEDYLGETVTEAVITVPAYFNDAQRQATKDAGKIAGLDV 164
[Close]
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_ACIBT (Chaperone protein dnaK OS=Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755) GN=dnaK PE=2 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 2.388e-25
Identity = 59/109 (54.13%), Postives = 78/109 (71.56%), Query Frame = 2 
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP NT+F  KRLIGRR+ D +VQ D+ L P+K+I        + VN    +K+ A ++IS+ +L KM++ AE YLG T+  AV+TVPAYFND+QRQATKDAG IAGL+V
Sbjct:   60 NPKNTLFAIKRLIGRRYEDQAVQKDIGLVPYKIIKADNGDAWVEVN----DKKLAPQQISAEILKKMKKTAEDYLGETVTEAVITVPAYFNDAQRQATKDAGKIAGLDV 164
[Close]
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_ACIBC (Chaperone protein dnaK OS=Acinetobacter baumannii (strain ACICU) GN=dnaK PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 2.388e-25
Identity = 59/109 (54.13%), Postives = 78/109 (71.56%), Query Frame = 2 
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP NT+F  KRLIGRR+ D +VQ D+ L P+K+I        + VN    +K+ A ++IS+ +L KM++ AE YLG T+  AV+TVPAYFND+QRQATKDAG IAGL+V
Sbjct:   60 NPKNTLFAIKRLIGRRYEDQAVQKDIGLVPYKIIKADNGDAWVEVN----DKKLAPQQISAEILKKMKKTAEDYLGETVTEAVITVPAYFNDAQRQATKDAGKIAGLDV 164
The following BLAST results are available for this feature:
BLAST of FC920664 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GRP75_PONAB1.829e-2554.13Stress-70 protein, mitochondrial OS=Pongo abelii G... [more]
GRP75_HUMAN1.829e-2554.13Stress-70 protein, mitochondrial OS=Homo sapiens G... [more]
GRP75_BOVIN1.829e-2554.13Stress-70 protein, mitochondrial OS=Bos taurus GN=... [more]
DNAK_SHEPW1.829e-2558.72Chaperone protein dnaK OS=Shewanella piezotolerans... [more]
DNAK_GEOUR1.829e-2555.96Chaperone protein dnaK OS=Geobacter uraniireducens... [more]
DNAK_RHOS42.388e-2555.05Chaperone protein dnaK OS=Rhodobacter sphaeroides ... [more]
DNAK_PSEHT2.388e-2557.80Chaperone protein dnaK OS=Pseudoalteromonas halopl... [more]
DNAK_ACIBY2.388e-2554.13Chaperone protein dnaK OS=Acinetobacter baumannii ... [more]
DNAK_ACIBT2.388e-2554.13Chaperone protein dnaK OS=Acinetobacter baumannii ... [more]
DNAK_ACIBC2.388e-2554.13Chaperone protein dnaK OS=Acinetobacter baumannii ... [more]

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Properties
Property NameValue
Genbank descriptionC32011D10EF RVDevelop1 Citrus clementina cDNA clone C32011D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920664 ID=FC920664; Name=FC920664; organism=Citrus clementina; type=EST; length=339bp
GGTCGCCATGAACCCCACGAACACCGTCTTTGATGCAAAGAGGTTGATTG
GTAGGAGATTCAGCGATGCATCAGTCCAAGGCGATATGAAGCTATGGCCA
TTTAAGGTGATTGCTGGACCTGCTGACAAGCCCATGATTGGTGTTAACTA
CAAGGGCGAAGAGAAGCAGTTTGCTGCTGAGGAAATCTCGTCTATGGTGC
TCATCAAGATGCGTGAGATTGCTGAGGCTTACCTTGGCGCAACTATTAAG
AATGCAGTCGTTACTGTCCCTGCTTACTTCAATGACTCACAGAGGCAGGC
CACCAAGGATGCCGGTGTCATTGCTGGGCTTAATGTGAT
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