FC920664

Overview
NameFC920664
Unique NameFC920664
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length339
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10212 contig Ccv1_Contig10212:291..629. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_BUCA5 (Chaperone protein dnaK OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain 5A) GN=dnaK PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.548e-24
Identity = 59/109 (54.13%), Postives = 76/109 (69.72%), Query Frame = 2
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP NT+F  KRLIGR+F D  VQ D+K+ P+ ++        I V    ++++ A  +IS+ VL KM++ AE YLG TIK AV+TVPAYFND+QRQATKDAG IAGL V
Sbjct:   61 NPKNTLFAIKRLIGRKFKDDEVQRDIKIMPYNIVNSDNGDAWIDV----KKQKMAPPQISAEVLKKMKKTAEDYLGETIKEAVITVPAYFNDAQRQATKDAGRIAGLEV 165          
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_BRUSU (Chaperone protein dnaK OS=Brucella suis GN=dnaK PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.548e-24
Identity = 57/109 (52.29%), Postives = 75/109 (68.81%), Query Frame = 2
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP  T+F  KRLIGRR+ D  V  D  L P+K++ G      + V+     K+++  +IS+M+L KM+E AE+YLG T+  AV+TVPAYFND+QRQATKDAG IAGL V
Sbjct:   61 NPEGTLFAVKRLIGRRYDDPMVTKDKDLVPYKIVKGDNGDAWVEVH----GKKYSPSQISAMILQKMKETAESYLGETVTQAVITVPAYFNDAQRQATKDAGKIAGLEV 165          
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_BRUO2 (Chaperone protein dnaK OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=dnaK PE=2 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 1.548e-24
Identity = 57/109 (52.29%), Postives = 75/109 (68.81%), Query Frame = 2
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP  T+F  KRLIGRR+ D  V  D  L P+K++ G      + V+     K+++  +IS+M+L KM+E AE+YLG T+  AV+TVPAYFND+QRQATKDAG IAGL V
Sbjct:   61 NPEGTLFAVKRLIGRRYDDPMVTKDKDLVPYKIVKGDNGDAWVEVH----GKKYSPSQISAMILQKMKETAESYLGETVTQAVITVPAYFNDAQRQATKDAGKIAGLEV 165          
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_BRUME (Chaperone protein dnaK OS=Brucella melitensis GN=dnaK PE=2 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 1.548e-24
Identity = 57/109 (52.29%), Postives = 75/109 (68.81%), Query Frame = 2
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP  T+F  KRLIGRR+ D  V  D  L P+K++ G      + V+     K+++  +IS+M+L KM+E AE+YLG T+  AV+TVPAYFND+QRQATKDAG IAGL V
Sbjct:   61 NPEGTLFAVKRLIGRRYDDPMVTKDKDLVPYKIVKGDNGDAWVEVH----GKKYSPSQISAMILQKMKETAESYLGETVTQAVITVPAYFNDAQRQATKDAGKIAGLEV 165          
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_BRUAB (Chaperone protein dnaK OS=Brucella abortus GN=dnaK PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.548e-24
Identity = 57/109 (52.29%), Postives = 75/109 (68.81%), Query Frame = 2
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP  T+F  KRLIGRR+ D  V  D  L P+K++ G      + V+     K+++  +IS+M+L KM+E AE+YLG T+  AV+TVPAYFND+QRQATKDAG IAGL V
Sbjct:   61 NPEGTLFAVKRLIGRRYDDPMVTKDKDLVPYKIVKGDNGDAWVEVH----GKKYSPSQISAMILQKMKETAESYLGETVTQAVITVPAYFNDAQRQATKDAGKIAGLEV 165          
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK2_PHOPR (Chaperone protein dnaK 2 OS=Photobacterium profundum GN=dnaK2 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.548e-24
Identity = 60/109 (55.05%), Postives = 77/109 (70.64%), Query Frame = 2
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP NT+F  KRL+GRRF D  VQ D+++ PF ++   AD     V  KG  K+ AA ++S+ VL KM++ AE YLG  +  AV+TVPAYFND+QRQATKDAG IAGL+V
Sbjct:   61 NPKNTLFAIKRLLGRRFEDEEVQRDIEIMPFNIVK--ADNGDAWVEAKG--KKMAAPQVSAEVLKKMKKTAEDYLGEEVTGAVITVPAYFNDAQRQATKDAGRIAGLDV 165          
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_SILPO (Chaperone protein dnaK OS=Silicibacter pomeroyi GN=dnaK PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.022e-24
Identity = 59/109 (54.13%), Postives = 76/109 (69.72%), Query Frame = 2
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP+NT+F  KRLIGRR  DA V  D K+ PF ++ G        V  KGE+  ++  +IS+++L KM+E AE+YLG  +  AV+TVPAYFND+QRQATKDAG IAGL V
Sbjct:   60 NPSNTIFGVKRLIGRRVDDAEVTKDKKMVPFTIVNGGNGDAW--VEAKGEK--YSPSQISAVILGKMKETAESYLGEEVTQAVITVPAYFNDAQRQATKDAGKIAGLEV 164          
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_SHELP (Chaperone protein dnaK OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=dnaK PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.022e-24
Identity = 58/109 (53.21%), Postives = 73/109 (66.97%), Query Frame = 2
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP NT F  KRLIGRRF D  VQ D+ + PFK+IA       +    +  +K+ A  ++S+ +L KM++ AE YLG  +  AV+TVPAYFNDSQRQATKDAG IAGL V
Sbjct:   60 NPKNTFFAIKRLIGRRFKDDEVQRDVDIMPFKIIAADNGDAWV----EAHDKKMAPPQVSAEILKKMKKTAEDYLGEPVTEAVITVPAYFNDSQRQATKDAGRIAGLEV 164          
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_MANSM (Chaperone protein dnaK OS=Mannheimia succiniciproducens (strain MBEL55E) GN=dnaK PE=2 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 2.022e-24
Identity = 61/109 (55.96%), Postives = 77/109 (70.64%), Query Frame = 2
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP NT+F  KRLIGRRF D  VQ D+ + PF++I   AD     V+ KG++   A  +IS+ VL KM++ AE +LG T+  AV+TVPAYFND+QRQATKDAG IAGL V
Sbjct:   61 NPKNTLFAIKRLIGRRFEDQEVQRDVNIMPFQIIK--ADNGDAWVDVKGDK--LAPPQISAEVLKKMKKTAEDFLGETVTEAVITVPAYFNDAQRQATKDAGRIAGLEV 165          
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_GEOLS (Chaperone protein dnaK OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=dnaK PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.022e-24
Identity = 56/109 (51.38%), Postives = 78/109 (71.56%), Query Frame = 2
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP NT+F  KRLIGR+F   +V+ D+ + PFK++        + V     +K+++  EIS+++L KM++ AE YLG T+ +AV+TVPAYF+DSQRQATKDAG IAGLNV
Sbjct:   61 NPENTLFAIKRLIGRKFETEAVKKDIAISPFKIVKADNGDAWVDVR----DKKYSPPEISAIILQKMKKTAEDYLGETVTDAVITVPAYFDDSQRQATKDAGKIAGLNV 165          
The following BLAST results are available for this feature:
BLAST of FC920664 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAK_BUCA51.548e-2454.13Chaperone protein dnaK OS=Buchnera aphidicola subs... [more]
DNAK_BRUSU1.548e-2452.29Chaperone protein dnaK OS=Brucella suis GN=dnaK PE... [more]
DNAK_BRUO21.548e-2452.29Chaperone protein dnaK OS=Brucella ovis (strain AT... [more]
DNAK_BRUME1.548e-2452.29Chaperone protein dnaK OS=Brucella melitensis GN=d... [more]
DNAK_BRUAB1.548e-2452.29Chaperone protein dnaK OS=Brucella abortus GN=dnaK... [more]
DNAK2_PHOPR1.548e-2455.05Chaperone protein dnaK 2 OS=Photobacterium profund... [more]
DNAK_SILPO2.022e-2454.13Chaperone protein dnaK OS=Silicibacter pomeroyi GN... [more]
DNAK_SHELP2.022e-2453.21Chaperone protein dnaK OS=Shewanella loihica (stra... [more]
DNAK_MANSM2.022e-2455.96Chaperone protein dnaK OS=Mannheimia succiniciprod... [more]
DNAK_GEOLS2.022e-2451.38Chaperone protein dnaK OS=Geobacter lovleyi (strai... [more]

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Properties
Property NameValue
Genbank descriptionC32011D10EF RVDevelop1 Citrus clementina cDNA clone C32011D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920664 ID=FC920664; Name=FC920664; organism=Citrus clementina; type=EST; length=339bp
GGTCGCCATGAACCCCACGAACACCGTCTTTGATGCAAAGAGGTTGATTG
GTAGGAGATTCAGCGATGCATCAGTCCAAGGCGATATGAAGCTATGGCCA
TTTAAGGTGATTGCTGGACCTGCTGACAAGCCCATGATTGGTGTTAACTA
CAAGGGCGAAGAGAAGCAGTTTGCTGCTGAGGAAATCTCGTCTATGGTGC
TCATCAAGATGCGTGAGATTGCTGAGGCTTACCTTGGCGCAACTATTAAG
AATGCAGTCGTTACTGTCCCTGCTTACTTCAATGACTCACAGAGGCAGGC
CACCAAGGATGCCGGTGTCATTGCTGGGCTTAATGTGAT
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