FC920664

Overview
NameFC920664
Unique NameFC920664
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length339
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10212 contig Ccv1_Contig10212:291..629. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_ACICJ (Chaperone protein dnaK OS=Acidiphilium cryptum (strain JF-5) GN=dnaK PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.022e-24
Identity = 59/109 (54.13%), Postives = 76/109 (69.72%), Query Frame = 2
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NPTNT++  KRLIGRR+ D +V+ D  L  + ++ G  D     V  +G+  ++A  +ISS VL KM+E AEAYLG  +  AV+TVPAYFND+QRQATKDAG IAGL V
Sbjct:   61 NPTNTLYAVKRLIGRRYDDPTVEKDKGLVSYNIVRG--DNGDAWVESRGQ--RYAPSQISSFVLTKMKETAEAYLGEAVTQAVITVPAYFNDAQRQATKDAGKIAGLEV 165          
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_VIBCM (Chaperone protein dnaK OS=Vibrio cholerae serotype O1 (strain M66-2) GN=dnaK PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.641e-24
Identity = 60/109 (55.05%), Postives = 77/109 (70.64%), Query Frame = 2
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP NT+F  KRLIGRRF D  VQ D+K+ P+K++   AD     V  KG++   AA ++S+ VL KM++ AE +LG  +  AV+TVPAYFND+QRQATKDAG IAGL V
Sbjct:   60 NPQNTLFAIKRLIGRRFEDEEVQRDIKIMPYKIVK--ADNGDAWVEAKGQK--MAAPQVSAEVLKKMKKTAEDFLGEPVTAAVITVPAYFNDAQRQATKDAGRIAGLEV 164          
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_VIBCH (Chaperone protein dnaK OS=Vibrio cholerae GN=dnaK PE=2 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 2.641e-24
Identity = 60/109 (55.05%), Postives = 77/109 (70.64%), Query Frame = 2
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP NT+F  KRLIGRRF D  VQ D+K+ P+K++   AD     V  KG++   AA ++S+ VL KM++ AE +LG  +  AV+TVPAYFND+QRQATKDAG IAGL V
Sbjct:   60 NPQNTLFAIKRLIGRRFEDEEVQRDIKIMPYKIVK--ADNGDAWVEAKGQK--MAAPQVSAEVLKKMKKTAEDFLGEPVTAAVITVPAYFNDAQRQATKDAGRIAGLEV 164          
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_VIBC3 (Chaperone protein dnaK OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=dnaK PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.641e-24
Identity = 60/109 (55.05%), Postives = 77/109 (70.64%), Query Frame = 2
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP NT+F  KRLIGRRF D  VQ D+K+ P+K++   AD     V  KG++   AA ++S+ VL KM++ AE +LG  +  AV+TVPAYFND+QRQATKDAG IAGL V
Sbjct:   60 NPQNTLFAIKRLIGRRFEDEEVQRDIKIMPYKIVK--ADNGDAWVEAKGQK--MAAPQVSAEVLKKMKKTAEDFLGEPVTAAVITVPAYFNDAQRQATKDAGRIAGLEV 164          
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_SHEAM (Chaperone protein dnaK OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=dnaK PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.641e-24
Identity = 61/109 (55.96%), Postives = 76/109 (69.72%), Query Frame = 2
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NPTNT F  KRLIGRRF D  VQ D+ + PFK+I   AD     V  +G  K+ A  ++S+ VL KM++ AE +LG  +  AV+TVPAYFND+QRQATKDAG IAGL+V
Sbjct:   60 NPTNTFFAIKRLIGRRFKDDEVQRDVNIMPFKIIQ--ADNGDAWVESRG--KKMAPPQVSAEVLKKMKKTAEDFLGEEVTEAVITVPAYFNDAQRQATKDAGRIAGLDV 164          
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_PELCD (Chaperone protein dnaK OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=dnaK PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.641e-24
Identity = 55/109 (50.46%), Postives = 78/109 (71.56%), Query Frame = 2
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP NT+F  KRLIGR+F   +V+ D+++ PF+++        + V     +K+++  EIS+M+L KM++ AE YLG  + +AV+TVPAYFNDSQRQATKDAG I+GLNV
Sbjct:   61 NPENTLFAIKRLIGRKFDSDAVRRDIQISPFEIVKADNGDAWVDVR----DKKYSPPEISAMILQKMKQTAEDYLGEKVTDAVITVPAYFNDSQRQATKDAGKISGLNV 165          
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_PARDP (Chaperone protein dnaK OS=Paracoccus denitrificans (strain Pd 1222) GN=dnaK PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.641e-24
Identity = 58/109 (53.21%), Postives = 78/109 (71.56%), Query Frame = 2
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP+NTVF  KRLIGRR +DA V+ D KL P+ ++ G      + V  +G++  ++  +IS+ +L KM+E AE+YLG  +  AV+TVPAYFND+QRQATKDAG IAGL V
Sbjct:   60 NPSNTVFAVKRLIGRRTTDAEVEKDKKLVPYAIVDGGNGDAWVEV--RGDK--YSPSQISAFILQKMKETAESYLGEPVTQAVITVPAYFNDAQRQATKDAGKIAGLEV 164          
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_GLUOX (Chaperone protein dnaK OS=Gluconobacter oxydans GN=dnaK PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.641e-24
Identity = 57/109 (52.29%), Postives = 78/109 (71.56%), Query Frame = 2
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP NT++  KRLIGRR+ D +VQ D ++ P+ ++ G  D     V  +GE+  +A  +I++ VL KM+E AE+YLG T+  AV+TVPAYFND+QRQAT+DAG IAGL V
Sbjct:   61 NPANTLYAVKRLIGRRYDDPTVQKDKEMVPYAIVRG--DNGDAWVEARGEK--YAPSQIAAYVLGKMKETAESYLGETVSQAVITVPAYFNDAQRQATRDAGKIAGLEV 165          
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_GLUDA (Chaperone protein dnaK OS=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) GN=dnaK PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.641e-24
Identity = 56/109 (51.38%), Postives = 75/109 (68.81%), Query Frame = 2
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP NT++  KRLIGRR+ D +V  D  L P+ ++AG      +    + + K++A  +I++ VL KM+E AEAYLG  +  AV+TVPAYFND+QRQATKDAG IAGL V
Sbjct:   61 NPANTLYAVKRLIGRRYDDPTVTKDKALVPYSIVAGDNGDAWV----EAQGKKYAPSQIAAFVLGKMKETAEAYLGEPVSQAVITVPAYFNDAQRQATKDAGRIAGLEV 165          
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK1_VIBF1 (Chaperone protein dnaK 1 OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=dnaK1 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.641e-24
Identity = 60/109 (55.05%), Postives = 78/109 (71.56%), Query Frame = 2
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP NT+F  KRLIGRRF D  VQ D+++ P+K+I   AD     V  KG++   AA ++S+ +L KM++ AE +LG  +  AVVTVPAYFND+QRQATKDAG IAGL+V
Sbjct:   60 NPQNTLFAIKRLIGRRFEDEEVQRDIEIMPYKIIK--ADNGDAWVEAKGQK--MAAPQVSAEILKKMKKTAEDFLGEEVTGAVVTVPAYFNDAQRQATKDAGRIAGLDV 164          
The following BLAST results are available for this feature:
BLAST of FC920664 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAK_ACICJ2.022e-2454.13Chaperone protein dnaK OS=Acidiphilium cryptum (st... [more]
DNAK_VIBCM2.641e-2455.05Chaperone protein dnaK OS=Vibrio cholerae serotype... [more]
DNAK_VIBCH2.641e-2455.05Chaperone protein dnaK OS=Vibrio cholerae GN=dnaK ... [more]
DNAK_VIBC32.641e-2455.05Chaperone protein dnaK OS=Vibrio cholerae serotype... [more]
DNAK_SHEAM2.641e-2455.96Chaperone protein dnaK OS=Shewanella amazonensis (... [more]
DNAK_PELCD2.641e-2450.46Chaperone protein dnaK OS=Pelobacter carbinolicus ... [more]
DNAK_PARDP2.641e-2453.21Chaperone protein dnaK OS=Paracoccus denitrificans... [more]
DNAK_GLUOX2.641e-2452.29Chaperone protein dnaK OS=Gluconobacter oxydans GN... [more]
DNAK_GLUDA2.641e-2451.38Chaperone protein dnaK OS=Gluconacetobacter diazot... [more]
DNAK1_VIBF12.641e-2455.05Chaperone protein dnaK 1 OS=Vibrio fischeri (strai... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32011D10EF RVDevelop1 Citrus clementina cDNA clone C32011D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920664 ID=FC920664; Name=FC920664; organism=Citrus clementina; type=EST; length=339bp
GGTCGCCATGAACCCCACGAACACCGTCTTTGATGCAAAGAGGTTGATTG
GTAGGAGATTCAGCGATGCATCAGTCCAAGGCGATATGAAGCTATGGCCA
TTTAAGGTGATTGCTGGACCTGCTGACAAGCCCATGATTGGTGTTAACTA
CAAGGGCGAAGAGAAGCAGTTTGCTGCTGAGGAAATCTCGTCTATGGTGC
TCATCAAGATGCGTGAGATTGCTGAGGCTTACCTTGGCGCAACTATTAAG
AATGCAGTCGTTACTGTCCCTGCTTACTTCAATGACTCACAGAGGCAGGC
CACCAAGGATGCCGGTGTCATTGCTGGGCTTAATGTGAT
back to top