FC920664

Overview
NameFC920664
Unique NameFC920664
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length339
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10212 contig Ccv1_Contig10212:291..629. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_LEGPN (Chaperone protein dnaK OS=Legionella pneumophila GN=dnaK PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.449e-24
Identity = 62/109 (56.88%), Postives = 76/109 (69.72%), Query Frame = 2
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP  T+F  KRLIGRRF D  VQ D+K+ P+K++   AD     V  K ++K  A  +IS+ VL KM++ AE YLG  +K AV+TVPAYFNDSQRQATKDAG IAGL V
Sbjct:   61 NPEKTLFAIKRLIGRRFDDPIVQKDIKMVPYKIMK--ADNGDAWVRVKDQDK--APPQISAEVLRKMKKTAEDYLGEEVKEAVITVPAYFNDSQRQATKDAGRIAGLEV 165          
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_LEGPL (Chaperone protein dnaK OS=Legionella pneumophila (strain Lens) GN=dnaK PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.449e-24
Identity = 62/109 (56.88%), Postives = 76/109 (69.72%), Query Frame = 2
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP  T+F  KRLIGRRF D  VQ D+K+ P+K++   AD     V  K ++K  A  +IS+ VL KM++ AE YLG  +K AV+TVPAYFNDSQRQATKDAG IAGL V
Sbjct:   61 NPEKTLFAIKRLIGRRFDDPIVQKDIKMVPYKIMK--ADNGDAWVRVKDQDK--APPQISAEVLRKMKKTAEDYLGEEVKEAVITVPAYFNDSQRQATKDAGRIAGLEV 165          
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_LEGPH (Chaperone protein dnaK OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=dnaK PE=2 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 3.449e-24
Identity = 62/109 (56.88%), Postives = 76/109 (69.72%), Query Frame = 2
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP  T+F  KRLIGRRF D  VQ D+K+ P+K++   AD     V  K ++K  A  +IS+ VL KM++ AE YLG  +K AV+TVPAYFNDSQRQATKDAG IAGL V
Sbjct:   61 NPEKTLFAIKRLIGRRFDDPIVQKDIKMVPYKIMK--ADNGDAWVRVKDQDK--APPQISAEVLRKMKKTAEDYLGEEVKEAVITVPAYFNDSQRQATKDAGRIAGLEV 165          
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_LEGPC (Chaperone protein dnaK OS=Legionella pneumophila (strain Corby) GN=dnaK PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.449e-24
Identity = 62/109 (56.88%), Postives = 76/109 (69.72%), Query Frame = 2
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP  T+F  KRLIGRRF D  VQ D+K+ P+K++   AD     V  K ++K  A  +IS+ VL KM++ AE YLG  +K AV+TVPAYFNDSQRQATKDAG IAGL V
Sbjct:   61 NPEKTLFAIKRLIGRRFDDPIVQKDIKMVPYKIMK--ADNGDAWVRVKDQDK--APPQISAEVLRKMKKTAEDYLGEEVKEAVITVPAYFNDSQRQATKDAGRIAGLEV 165          
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_LEGPA (Chaperone protein dnaK OS=Legionella pneumophila (strain Paris) GN=dnaK PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.449e-24
Identity = 62/109 (56.88%), Postives = 76/109 (69.72%), Query Frame = 2
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP  T+F  KRLIGRRF D  VQ D+K+ P+K++   AD     V  K ++K  A  +IS+ VL KM++ AE YLG  +K AV+TVPAYFNDSQRQATKDAG IAGL V
Sbjct:   61 NPEKTLFAIKRLIGRRFDDPIVQKDIKMVPYKIMK--ADNGDAWVRVKDQDK--APPQISAEVLRKMKKTAEDYLGEEVKEAVITVPAYFNDSQRQATKDAGRIAGLEV 165          
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_ENTS8 (Chaperone protein dnaK OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=dnaK PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.449e-24
Identity = 60/109 (55.05%), Postives = 77/109 (70.64%), Query Frame = 2
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP NT+F  KRLIGRRF D  VQ D+ + P+K+I+  AD     ++ KG++   A  +IS+ VL KM++ AE YLG  +  AV+TVPAYFND+QRQATKDAG IAGL V
Sbjct:   61 NPQNTLFAIKRLIGRRFQDEEVQRDVSIMPYKIIS--ADNGDAWLDVKGQK--MAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEV 165          
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_EDWI9 (Chaperone protein dnaK OS=Edwardsiella ictaluri (strain 93-146) GN=dnaK PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.449e-24
Identity = 57/109 (52.29%), Postives = 76/109 (69.72%), Query Frame = 2
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP NT+F  KRLIGRRF DA  Q D  + P+K++A       + V    ++++ A  +IS+ VL KM++ AE +LG T+  AV+TVPAYFND+QRQATKDAG IAGL+V
Sbjct:   61 NPQNTLFAIKRLIGRRFEDAEAQRDKDIMPYKIVAADNGDAWVEV----KDQKIAPPQISAEVLKKMKKTAEDFLGETVTEAVITVPAYFNDAQRQATKDAGRIAGLDV 165          
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_CHRVO (Chaperone protein dnaK OS=Chromobacterium violaceum GN=dnaK PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.449e-24
Identity = 58/109 (53.21%), Postives = 74/109 (67.89%), Query Frame = 2
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP NT++ AKRLIGRRF D  VQ D+ L PF+++        + V     +++ A  +IS+ VL KM++ AE YLG  +  AV+TVPAYFNDSQRQATKDAG IAGL V
Sbjct:   61 NPKNTIYAAKRLIGRRFEDKEVQKDIDLMPFEILKAKNGDAWVKVR----DQELAPPQISAEVLRKMKKAAEDYLGEEVTEAVITVPAYFNDSQRQATKDAGRIAGLEV 165          
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_AERS4 (Chaperone protein dnaK OS=Aeromonas salmonicida (strain A449) GN=dnaK PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.449e-24
Identity = 61/109 (55.96%), Postives = 75/109 (68.81%), Query Frame = 2
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP NT+F  KRLIGRRF D  VQ D+K+ P+ +    AD     V  KG  K+ A  +IS+ VL KM++ AE YLG  +  AV+TVPAYFND+QRQATKDAG IAGL+V
Sbjct:   61 NPKNTLFAIKRLIGRRFEDEEVQRDLKIMPYAI--AKADNGDAWVEVKG--KKMAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLDV 165          
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: HSP71_LEIMA (Heat shock 70-related protein 1, mitochondrial OS=Leishmania major GN=HSP70.1 PE=3 SV=3)

HSP 1 Score: 109.768 bits (273), Expect = 4.504e-24
Identity = 59/110 (53.64%), Postives = 75/110 (68.18%), Query Frame = 2
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVI-AGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP +T +  KRLIGRRF D  +Q D+K  P+K++ AG  D  +      G  KQ++  +I + VL KM+E AE +LG  + NAVVT PAYFND+QRQATKDAG IAGLNV
Sbjct:   85 NPQSTFYAVKRLIGRRFEDEHIQKDIKNVPYKIVRAGNGDAWV----QDGNGKQYSPSQIGAFVLEKMKETAENFLGHKVSNAVVTCPAYFNDAQRQATKDAGTIAGLNV 190          
The following BLAST results are available for this feature:
BLAST of FC920664 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAK_LEGPN3.449e-2456.88Chaperone protein dnaK OS=Legionella pneumophila G... [more]
DNAK_LEGPL3.449e-2456.88Chaperone protein dnaK OS=Legionella pneumophila (... [more]
DNAK_LEGPH3.449e-2456.88Chaperone protein dnaK OS=Legionella pneumophila s... [more]
DNAK_LEGPC3.449e-2456.88Chaperone protein dnaK OS=Legionella pneumophila (... [more]
DNAK_LEGPA3.449e-2456.88Chaperone protein dnaK OS=Legionella pneumophila (... [more]
DNAK_ENTS83.449e-2455.05Chaperone protein dnaK OS=Enterobacter sakazakii (... [more]
DNAK_EDWI93.449e-2452.29Chaperone protein dnaK OS=Edwardsiella ictaluri (s... [more]
DNAK_CHRVO3.449e-2453.21Chaperone protein dnaK OS=Chromobacterium violaceu... [more]
DNAK_AERS43.449e-2455.96Chaperone protein dnaK OS=Aeromonas salmonicida (s... [more]
HSP71_LEIMA4.504e-2453.64Heat shock 70-related protein 1, mitochondrial OS=... [more]

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Properties
Property NameValue
Genbank descriptionC32011D10EF RVDevelop1 Citrus clementina cDNA clone C32011D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920664 ID=FC920664; Name=FC920664; organism=Citrus clementina; type=EST; length=339bp
GGTCGCCATGAACCCCACGAACACCGTCTTTGATGCAAAGAGGTTGATTG
GTAGGAGATTCAGCGATGCATCAGTCCAAGGCGATATGAAGCTATGGCCA
TTTAAGGTGATTGCTGGACCTGCTGACAAGCCCATGATTGGTGTTAACTA
CAAGGGCGAAGAGAAGCAGTTTGCTGCTGAGGAAATCTCGTCTATGGTGC
TCATCAAGATGCGTGAGATTGCTGAGGCTTACCTTGGCGCAACTATTAAG
AATGCAGTCGTTACTGTCCCTGCTTACTTCAATGACTCACAGAGGCAGGC
CACCAAGGATGCCGGTGTCATTGCTGGGCTTAATGTGAT
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