FC920664

Overview
NameFC920664
Unique NameFC920664
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length339
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10212 contig Ccv1_Contig10212:291..629. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_SALPA (Chaperone protein dnaK OS=Salmonella paratyphi A GN=dnaK PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 4.504e-24
Identity = 60/109 (55.05%), Postives = 76/109 (69.72%), Query Frame = 2 
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP NT+F  KRLIGRRF D  VQ D+ + P+K+I   AD     ++ KG++   A  +IS+ VL KM++ AE YLG  +  AV+TVPAYFND+QRQATKDAG IAGL V
Sbjct:   61 NPQNTLFAIKRLIGRRFQDEEVQRDVSIMPYKIIG--ADNGDAWLDVKGQK--MAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEV 165
[Close]
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_SALNS (Chaperone protein dnaK OS=Salmonella newport (strain SL254) GN=dnaK PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 4.504e-24
Identity = 60/109 (55.05%), Postives = 76/109 (69.72%), Query Frame = 2 
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP NT+F  KRLIGRRF D  VQ D+ + P+K+I   AD     ++ KG++   A  +IS+ VL KM++ AE YLG  +  AV+TVPAYFND+QRQATKDAG IAGL V
Sbjct:   61 NPQNTLFAIKRLIGRRFQDEEVQRDVSIMPYKIIG--ADNGDAWLDVKGQK--MAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEV 165
[Close]
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_SALHS (Chaperone protein dnaK OS=Salmonella heidelberg (strain SL476) GN=dnaK PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 4.504e-24
Identity = 60/109 (55.05%), Postives = 76/109 (69.72%), Query Frame = 2 
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP NT+F  KRLIGRRF D  VQ D+ + P+K+I   AD     ++ KG++   A  +IS+ VL KM++ AE YLG  +  AV+TVPAYFND+QRQATKDAG IAGL V
Sbjct:   61 NPQNTLFAIKRLIGRRFQDEEVQRDVSIMPYKIIG--ADNGDAWLDVKGQK--MAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEV 165
[Close]
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_SALG2 (Chaperone protein dnaK OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=dnaK PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 4.504e-24
Identity = 60/109 (55.05%), Postives = 76/109 (69.72%), Query Frame = 2 
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP NT+F  KRLIGRRF D  VQ D+ + P+K+I   AD     ++ KG++   A  +IS+ VL KM++ AE YLG  +  AV+TVPAYFND+QRQATKDAG IAGL V
Sbjct:   61 NPQNTLFAIKRLIGRRFQDEEVQRDVSIMPYKIIG--ADNGDAWLDVKGQK--MAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEV 165
[Close]
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_SALEP (Chaperone protein dnaK OS=Salmonella enteritidis PT4 (strain P125109) GN=dnaK PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 4.504e-24
Identity = 60/109 (55.05%), Postives = 76/109 (69.72%), Query Frame = 2 
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP NT+F  KRLIGRRF D  VQ D+ + P+K+I   AD     ++ KG++   A  +IS+ VL KM++ AE YLG  +  AV+TVPAYFND+QRQATKDAG IAGL V
Sbjct:   61 NPQNTLFAIKRLIGRRFQDEEVQRDVSIMPYKIIG--ADNGDAWLDVKGQK--MAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEV 165
[Close]
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_SALDC (Chaperone protein dnaK OS=Salmonella dublin (strain CT_02021853) GN=dnaK PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 4.504e-24
Identity = 60/109 (55.05%), Postives = 76/109 (69.72%), Query Frame = 2 
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP NT+F  KRLIGRRF D  VQ D+ + P+K+I   AD     ++ KG++   A  +IS+ VL KM++ AE YLG  +  AV+TVPAYFND+QRQATKDAG IAGL V
Sbjct:   61 NPQNTLFAIKRLIGRRFQDEEVQRDVSIMPYKIIG--ADNGDAWLDVKGQK--MAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEV 165
[Close]
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_SALCH (Chaperone protein dnaK OS=Salmonella choleraesuis GN=dnaK PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 4.504e-24
Identity = 60/109 (55.05%), Postives = 76/109 (69.72%), Query Frame = 2 
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP NT+F  KRLIGRRF D  VQ D+ + P+K+I   AD     ++ KG++   A  +IS+ VL KM++ AE YLG  +  AV+TVPAYFND+QRQATKDAG IAGL V
Sbjct:   61 NPQNTLFAIKRLIGRRFQDEEVQRDVSIMPYKIIG--ADNGDAWLDVKGQK--MAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEV 165
[Close]
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_SALA4 (Chaperone protein dnaK OS=Salmonella agona (strain SL483) GN=dnaK PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 4.504e-24
Identity = 60/109 (55.05%), Postives = 76/109 (69.72%), Query Frame = 2 
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP NT+F  KRLIGRRF D  VQ D+ + P+K+I   AD     ++ KG++   A  +IS+ VL KM++ AE YLG  +  AV+TVPAYFND+QRQATKDAG IAGL V
Sbjct:   61 NPQNTLFAIKRLIGRRFQDEEVQRDVSIMPYKIIG--ADNGDAWLDVKGQK--MAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEV 165
[Close]
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_PSEPF (Chaperone protein dnaK OS=Pseudomonas fluorescens (strain Pf0-1) GN=dnaK PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 4.504e-24
Identity = 59/109 (54.13%), Postives = 74/109 (67.89%), Query Frame = 2 
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP NT+F  KRLIGRRF +  VQ D+KL P+K++        +    +   KQ A  +IS+ VL KM++ AE YLG  +  AV+TVPAYFNDSQRQATKDAG IAGL+V
Sbjct:   61 NPHNTLFAVKRLIGRRFEEEVVQKDIKLVPYKIVKANNGDAWV----EASGKQMAPPQISAEVLKKMKKTAEDYLGEAVTEAVITVPAYFNDSQRQATKDAGRIAGLDV 165
[Close]
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_HAES2 (Chaperone protein dnaK OS=Haemophilus somnus (strain 2336) GN=dnaK PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 4.504e-24
Identity = 61/109 (55.96%), Postives = 76/109 (69.72%), Query Frame = 2 
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP NT+F  KRLIGRRF D  VQ D+ + PF++    AD     V+ KGE+   A  +IS+ VL KM++ AE +LG T+  AV+TVPAYFND+QRQATKDAG IAGL V
Sbjct:   61 NPKNTLFAIKRLIGRRFEDQEVQRDVAIMPFEITK--ADNGDAWVSVKGEK--MAPPQISAEVLKKMKKTAEDFLGETVTEAVITVPAYFNDAQRQATKDAGRIAGLEV 165
The following BLAST results are available for this feature:
BLAST of FC920664 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAK_SALPA4.504e-2455.05Chaperone protein dnaK OS=Salmonella paratyphi A G... [more]
DNAK_SALNS4.504e-2455.05Chaperone protein dnaK OS=Salmonella newport (stra... [more]
DNAK_SALHS4.504e-2455.05Chaperone protein dnaK OS=Salmonella heidelberg (s... [more]
DNAK_SALG24.504e-2455.05Chaperone protein dnaK OS=Salmonella gallinarum (s... [more]
DNAK_SALEP4.504e-2455.05Chaperone protein dnaK OS=Salmonella enteritidis P... [more]
DNAK_SALDC4.504e-2455.05Chaperone protein dnaK OS=Salmonella dublin (strai... [more]
DNAK_SALCH4.504e-2455.05Chaperone protein dnaK OS=Salmonella choleraesuis ... [more]
DNAK_SALA44.504e-2455.05Chaperone protein dnaK OS=Salmonella agona (strain... [more]
DNAK_PSEPF4.504e-2454.13Chaperone protein dnaK OS=Pseudomonas fluorescens ... [more]
DNAK_HAES24.504e-2455.96Chaperone protein dnaK OS=Haemophilus somnus (stra... [more]

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Properties
Property NameValue
Genbank descriptionC32011D10EF RVDevelop1 Citrus clementina cDNA clone C32011D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920664 ID=FC920664; Name=FC920664; organism=Citrus clementina; type=EST; length=339bp
GGTCGCCATGAACCCCACGAACACCGTCTTTGATGCAAAGAGGTTGATTG
GTAGGAGATTCAGCGATGCATCAGTCCAAGGCGATATGAAGCTATGGCCA
TTTAAGGTGATTGCTGGACCTGCTGACAAGCCCATGATTGGTGTTAACTA
CAAGGGCGAAGAGAAGCAGTTTGCTGCTGAGGAAATCTCGTCTATGGTGC
TCATCAAGATGCGTGAGATTGCTGAGGCTTACCTTGGCGCAACTATTAAG
AATGCAGTCGTTACTGTCCCTGCTTACTTCAATGACTCACAGAGGCAGGC
CACCAAGGATGCCGGTGTCATTGCTGGGCTTAATGTGAT
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