FC920664

Overview
NameFC920664
Unique NameFC920664
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length339
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_YERPG (Chaperone protein dnaK OS=Yersinia pestis bv. Antiqua (strain Angola) GN=dnaK PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.310e-23
Identity = 60/109 (55.05%), Postives = 74/109 (67.89%), Query Frame = 2 
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP NT+F  KRLIGRRF D   Q D  + P+K+IA  AD     +  KG++   A  +IS+ VL KM++ AE YLG  +  AV+TVPAYFND+QRQATKDAG IAGL V
Sbjct:   61 NPQNTLFAIKRLIGRRFQDEEAQRDKDIMPYKIIA--ADNGDAWLEVKGQK--MAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEV 165
[Close]
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_YERPE (Chaperone protein dnaK OS=Yersinia pestis GN=dnaK PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.310e-23
Identity = 60/109 (55.05%), Postives = 74/109 (67.89%), Query Frame = 2 
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP NT+F  KRLIGRRF D   Q D  + P+K+IA  AD     +  KG++   A  +IS+ VL KM++ AE YLG  +  AV+TVPAYFND+QRQATKDAG IAGL V
Sbjct:   61 NPQNTLFAIKRLIGRRFQDEEAQRDKDIMPYKIIA--ADNGDAWLEVKGQK--MAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEV 165
[Close]
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_YERPB (Chaperone protein dnaK OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=dnaK PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.310e-23
Identity = 60/109 (55.05%), Postives = 74/109 (67.89%), Query Frame = 2 
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP NT+F  KRLIGRRF D   Q D  + P+K+IA  AD     +  KG++   A  +IS+ VL KM++ AE YLG  +  AV+TVPAYFND+QRQATKDAG IAGL V
Sbjct:   61 NPQNTLFAIKRLIGRRFQDEEAQRDKDIMPYKIIA--ADNGDAWLEVKGQK--MAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEV 165
[Close]
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_YERPA (Chaperone protein dnaK OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=dnaK PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.310e-23
Identity = 60/109 (55.05%), Postives = 74/109 (67.89%), Query Frame = 2 
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP NT+F  KRLIGRRF D   Q D  + P+K+IA  AD     +  KG++   A  +IS+ VL KM++ AE YLG  +  AV+TVPAYFND+QRQATKDAG IAGL V
Sbjct:   61 NPQNTLFAIKRLIGRRFQDEEAQRDKDIMPYKIIA--ADNGDAWLEVKGQK--MAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEV 165
[Close]
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_YERP3 (Chaperone protein dnaK OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=dnaK PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.310e-23
Identity = 60/109 (55.05%), Postives = 74/109 (67.89%), Query Frame = 2 
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP NT+F  KRLIGRRF D   Q D  + P+K+IA  AD     +  KG++   A  +IS+ VL KM++ AE YLG  +  AV+TVPAYFND+QRQATKDAG IAGL V
Sbjct:   61 NPQNTLFAIKRLIGRRFQDEEAQRDKDIMPYKIIA--ADNGDAWLEVKGQK--MAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEV 165
[Close]
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_YERE8 (Chaperone protein dnaK OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=dnaK PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.310e-23
Identity = 60/109 (55.05%), Postives = 74/109 (67.89%), Query Frame = 2 
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP NT+F  KRLIGRRF D   Q D  + P+K+IA  AD     +  KG++   A  +IS+ VL KM++ AE YLG  +  AV+TVPAYFND+QRQATKDAG IAGL V
Sbjct:   61 NPQNTLFAIKRLIGRRFQDEEAQRDKDIMPYKIIA--ADNGDAWLEVKGQK--IAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEV 165
[Close]
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_NEIG1 (Chaperone protein dnaK OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) GN=dnaK PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.310e-23
Identity = 57/109 (52.29%), Postives = 74/109 (67.89%), Query Frame = 2 
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            N  NT++ AKRLIG +F D  VQ D++  PF++I        +    K + K+ +  +IS+ VL KM+E AEAYLG  +  AV+TVPAYFNDSQRQATKDAG IAGL+V
Sbjct:   61 NAKNTIYAAKRLIGHKFEDKEVQRDIESMPFEIIKADNGDAWV----KAQGKELSPPQISAEVLRKMKEAAEAYLGEKVTEAVITVPAYFNDSQRQATKDAGRIAGLDV 165
[Close]
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_MARAV (Chaperone protein dnaK OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=dnaK PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.310e-23
Identity = 60/109 (55.05%), Postives = 75/109 (68.81%), Query Frame = 2 
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP NT++  KRLIGRRF D  VQ D+K+ P+K+    AD     V  KG++   A  ++S+ VL KM++ AE YLG  +  AV+TVPAYFNDSQRQATKDAG IAGL V
Sbjct:   61 NPHNTLYAIKRLIGRRFEDDVVQKDIKMVPYKI--AKADNGDAWVEVKGQK--MAPPQVSAEVLKKMKKTAEDYLGEKVTEAVITVPAYFNDSQRQATKDAGKIAGLEV 165
[Close]
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_HAEIG (Chaperone protein dnaK OS=Haemophilus influenzae (strain PittGG) GN=dnaK PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.310e-23
Identity = 60/109 (55.05%), Postives = 76/109 (69.72%), Query Frame = 2 
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP NT+F  KRLIGRRF    VQ D+K+ PF++    AD     VN KG++   A  +IS+ VL KM++ AE +LG T+  AV+TVPAYFND+QRQAT DAG IAGL+V
Sbjct:   60 NPKNTLFAIKRLIGRRFESEEVQRDIKIMPFEITR--ADNGDAWVNVKGDK--LAPPQISAEVLKKMKKTAEDFLGETVTEAVITVPAYFNDAQRQATIDAGKIAGLDV 164
[Close]
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_AERHH (Chaperone protein dnaK OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=dnaK PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.310e-23
Identity = 60/109 (55.05%), Postives = 75/109 (68.81%), Query Frame = 2 
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP NT+F  KRLIGRRF D  VQ D+++ P+ +    AD     V  KG  K+ A  +IS+ VL KM++ AE YLG  +  AV+TVPAYFND+QRQATKDAG IAGL+V
Sbjct:   61 NPKNTLFAIKRLIGRRFEDDEVQRDLEIMPYAI--AKADNGDAWVEVKG--KKMAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLDV 165
The following BLAST results are available for this feature:
BLAST of FC920664 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAK_YERPG1.310e-2355.05Chaperone protein dnaK OS=Yersinia pestis bv. Anti... [more]
DNAK_YERPE1.310e-2355.05Chaperone protein dnaK OS=Yersinia pestis GN=dnaK ... [more]
DNAK_YERPB1.310e-2355.05Chaperone protein dnaK OS=Yersinia pseudotuberculo... [more]
DNAK_YERPA1.310e-2355.05Chaperone protein dnaK OS=Yersinia pestis bv. Anti... [more]
DNAK_YERP31.310e-2355.05Chaperone protein dnaK OS=Yersinia pseudotuberculo... [more]
DNAK_YERE81.310e-2355.05Chaperone protein dnaK OS=Yersinia enterocolitica ... [more]
DNAK_NEIG11.310e-2352.29Chaperone protein dnaK OS=Neisseria gonorrhoeae (s... [more]
DNAK_MARAV1.310e-2355.05Chaperone protein dnaK OS=Marinobacter aquaeolei (... [more]
DNAK_HAEIG1.310e-2355.05Chaperone protein dnaK OS=Haemophilus influenzae (... [more]
DNAK_AERHH1.310e-2355.05Chaperone protein dnaK OS=Aeromonas hydrophila sub... [more]

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Properties
Property NameValue
Genbank descriptionC32011D10EF RVDevelop1 Citrus clementina cDNA clone C32011D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920664 ID=FC920664; Name=FC920664; organism=Citrus clementina; type=EST; length=339bp
GGTCGCCATGAACCCCACGAACACCGTCTTTGATGCAAAGAGGTTGATTG
GTAGGAGATTCAGCGATGCATCAGTCCAAGGCGATATGAAGCTATGGCCA
TTTAAGGTGATTGCTGGACCTGCTGACAAGCCCATGATTGGTGTTAACTA
CAAGGGCGAAGAGAAGCAGTTTGCTGCTGAGGAAATCTCGTCTATGGTGC
TCATCAAGATGCGTGAGATTGCTGAGGCTTACCTTGGCGCAACTATTAAG
AATGCAGTCGTTACTGTCCCTGCTTACTTCAATGACTCACAGAGGCAGGC
CACCAAGGATGCCGGTGTCATTGCTGGGCTTAATGTGAT
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