FC920669

Overview
NameFC920669
Unique NameFC920669
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length625
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11587 contig Ccv1_Contig11587:107..731. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920669 vs. ExPASy Swiss-Prot
Match: GUN4_BACS5 (Endoglucanase 4 OS=Bacillus sp. (strain KSM-522) PE=3 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 1.143e-18
Identity = 41/75 (54.67%), Postives = 59/75 (78.67%), Query Frame = 3
Query:  378 YAEALKVAMQFFDVQKSGKLV-NNKISWRGDSALKDGRDMGLDLTKGMYDAGDHMKFGFPMAFTATVLSXAILEY 599
            Y E L+ ++ F++ Q+SGKL  +N+++WRGDS L+DG+D+G DLT G YDAGDH+KFG PMA++A VL+  + EY
Sbjct:   30 YVEVLQKSILFYEAQRSGKLPESNRLNWRGDSGLEDGKDVGHDLTGGWYDAGDHVKFGLPMAYSAAVLAWTVYEY 104          
BLAST of FC920669 vs. ExPASy Swiss-Prot
Match: GUN7_ORYSJ (Endoglucanase 7 OS=Oryza sativa subsp. japonica GN=GLU10 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.492e-18
Identity = 40/80 (50.00%), Postives = 61/80 (76.25%), Query Frame = 3
Query:  378 YAEALKVAMQFFDVQKSGKLVNN-KISWRGDSALKDGRDMGLDLTKGMYDAGDHMKFGFPMAFTATVLSXAILEYGDQMD 614
            Y +AL+ ++ +F+ Q+SG+L +N +++WR  S L DG + G+DL  G YDAGDH+KFG PMAFT T+LS +++EYGD ++
Sbjct:   37 YEDALRKSLLYFEAQRSGRLPHNQRVAWRDHSGLTDGLEQGVDLVGGYYDAGDHVKFGLPMAFTVTMLSWSMIEYGDDVE 116          
BLAST of FC920669 vs. ExPASy Swiss-Prot
Match: GUN4_ORYSJ (Endoglucanase 4 OS=Oryza sativa subsp. japonica GN=GLU14 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.949e-18
Identity = 43/79 (54.43%), Postives = 58/79 (73.42%), Query Frame = 3
Query:  378 YAEALKVAMQFFDVQKSGKLV-NNKISWRGDSALKDGRDMGLDLTKGMYDAGDHMKFGFPMAFTATVLSXAILEYGDQM 611
            YA+AL  A+ FF+ Q+SGKL    +++WR DS L DG   G+DL  G YDAGD++KFG PMAFT T+LS +++E+GD M
Sbjct:   25 YADALDKAILFFEAQRSGKLPPGQRVAWRADSGLSDGSADGVDLAGGYYDAGDNVKFGLPMAFTVTMLSWSVIEFGDMM 103          
BLAST of FC920669 vs. ExPASy Swiss-Prot
Match: GUN11_ARATH (Endoglucanase 11 OS=Arabidopsis thaliana GN=At2g32990 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.546e-18
Identity = 40/79 (50.63%), Postives = 58/79 (73.42%), Query Frame = 3
Query:  378 YAEALKVAMQFFDVQKSGKL-VNNKISWRGDSALKDGRDMGLDLTKGMYDAGDHMKFGFPMAFTATVLSXAILEYGDQM 611
            Y EAL  ++ +F+ Q+SG+L  N +++WR  S L DG + G+DL  G +DAGDH+KFG PMAFT T+LS +++EYGD +
Sbjct:   40 YGEALSKSLLYFEAQRSGRLPYNQRVTWRDHSGLTDGLEQGVDLVGGYHDAGDHVKFGLPMAFTVTMLSWSVIEYGDSL 118          
BLAST of FC920669 vs. ExPASy Swiss-Prot
Match: GUNF_CLOTH (Endoglucanase F OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=celF PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.325e-18
Identity = 44/77 (57.14%), Postives = 56/77 (72.73%), Query Frame = 3
Query:  378 YAEALKVAMQFFDVQKSGKLVNNKIS-WRGDSALKDGRDMGLDLTKGMYDAGDHMKFGFPMAFTATVLSXAILEYGD 605
            Y EAL+ A+ F++ Q+SGKL  NK + WRGDSAL DG D GLDLT G YDAGDH+KF  PMA+  T+L+ ++ E  D
Sbjct:   32 YGEALQKAIMFYEFQRSGKLPENKRNNWRGDSALNDGADNGLDLTGGWYDAGDHVKFNLPMAYAVTMLAWSVYESRD 108          
BLAST of FC920669 vs. ExPASy Swiss-Prot
Match: GUNB_CELFI (Endoglucanase B OS=Cellulomonas fimi GN=cenB PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.325e-18
Identity = 44/74 (59.46%), Postives = 56/74 (75.68%), Query Frame = 3
Query:  378 YAEALKVAMQFFDVQKSGKL-VNNKISWRGDSALKDGRDMGLDLTKGMYDAGDHMKFGFPMAFTATVLSXAILE 596
            YAEAL+ +M F+  Q+SG L  +  +SWRGDS L DG D+G DLT G YDAGDH+KFGFPMAF+AT+L+   +E
Sbjct:   39 YAEALQKSMFFYQAQRSGDLPADFPVSWRGDSGLTDGADVGKDLTGGWYDAGDHVKFGFPMAFSATMLAWGAIE 112          
BLAST of FC920669 vs. ExPASy Swiss-Prot
Match: GUN4_ARATH (Endoglucanase 4 OS=Arabidopsis thaliana GN=At1g23210 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.342e-18
Identity = 41/79 (51.90%), Postives = 61/79 (77.22%), Query Frame = 3
Query:  378 YAEALKVAMQFFDVQKSGKLV-NNKISWRGDSALKDGRDMGLDLTKGMYDAGDHMKFGFPMAFTATVLSXAILEYGDQM 611
            Y +AL+ ++ FF+ Q+SGKL  + ++ WR DSAL+DG   G+DLT G YDAGD++KFGFPMAFT T++S +++++G  M
Sbjct:   29 YRDALRKSILFFEGQRSGKLPPDQRLKWRRDSALRDGSSAGVDLTGGYYDAGDNVKFGFPMAFTTTMMSWSVIDFGKTM 107          
BLAST of FC920669 vs. ExPASy Swiss-Prot
Match: GUN8_ARATH (Endoglucanase 8 OS=Arabidopsis thaliana GN=CEL1 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 5.671e-18
Identity = 42/79 (53.16%), Postives = 61/79 (77.22%), Query Frame = 3
Query:  378 YAEALKVAMQFFDVQKSGKLV-NNKISWRGDSALKDGRDMGLDLTKGMYDAGDHMKFGFPMAFTATVLSXAILEYGDQM 611
            Y +AL+ ++ FF+ Q+SGKL  + ++ WR DSAL+DG   G+DL+ G YDAGD++KFGFPMAFT T+LS +I+++G  M
Sbjct:   29 YRDALRKSILFFEGQRSGKLPPDQRLKWRRDSALRDGSSAGVDLSGGYYDAGDNIKFGFPMAFTTTMLSWSIIDFGKTM 107          
BLAST of FC920669 vs. ExPASy Swiss-Prot
Match: GUN15_ARATH (Endoglucanase 15 OS=Arabidopsis thaliana GN=At2g44570 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 5.671e-18
Identity = 42/79 (53.16%), Postives = 60/79 (75.95%), Query Frame = 3
Query:  378 YAEALKVAMQFFDVQKSGKL-VNNKISWRGDSALKDGRDMGLDLTKGMYDAGDHMKFGFPMAFTATVLSXAILEYGDQM 611
            Y EAL  ++ +F+ Q+SGKL ++ ++ WRGDSAL+DG D  +DLT G YDAGD+MKFGFP+AFT T+L+ + +E   Q+
Sbjct:   34 YGEALTKSLLYFEAQRSGKLPLDQRVIWRGDSALRDGSDAHVDLTGGYYDAGDNMKFGFPLAFTTTMLAWSSVEMESQL 112          
BLAST of FC920669 vs. ExPASy Swiss-Prot
Match: GUNZ_CLOSR (Endoglucanase Z OS=Clostridium stercorarium GN=celZ PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 7.407e-18
Identity = 43/80 (53.75%), Postives = 58/80 (72.50%), Query Frame = 3
Query:  378 YAEALKVAMQFFDVQKSGKLVNNKI-SWRGDSALKDGRDMGLDLTKGMYDAGDHMKFGFPMAFTATVLSXAILEYGDQMD 614
            Y EAL+ A+ F++ Q+SGKL  NK  +WRGDS L DG D+GLDLT G YDAGDH+KF  PMA++ T+L+ A  E  + ++
Sbjct:   32 YGEALQKAIMFYEFQRSGKLPENKRDNWRGDSGLNDGADVGLDLTGGWYDAGDHVKFNLPMAYSQTMLAWAAYEAEEALE 111          
The following BLAST results are available for this feature:
BLAST of FC920669 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
GUN4_BACS51.143e-1854.67Endoglucanase 4 OS=Bacillus sp. (strain KSM-522) P... [more]
GUN7_ORYSJ1.492e-1850.00Endoglucanase 7 OS=Oryza sativa subsp. japonica GN... [more]
GUN4_ORYSJ1.949e-1854.43Endoglucanase 4 OS=Oryza sativa subsp. japonica GN... [more]
GUN11_ARATH2.546e-1850.63Endoglucanase 11 OS=Arabidopsis thaliana GN=At2g32... [more]
GUNF_CLOTH3.325e-1857.14Endoglucanase F OS=Clostridium thermocellum (strai... [more]
GUNB_CELFI3.325e-1859.46Endoglucanase B OS=Cellulomonas fimi GN=cenB PE=3 ... [more]
GUN4_ARATH4.342e-1851.90Endoglucanase 4 OS=Arabidopsis thaliana GN=At1g232... [more]
GUN8_ARATH5.671e-1853.16Endoglucanase 8 OS=Arabidopsis thaliana GN=CEL1 PE... [more]
GUN15_ARATH5.671e-1853.16Endoglucanase 15 OS=Arabidopsis thaliana GN=At2g44... [more]
GUNZ_CLOSR7.407e-1853.75Endoglucanase Z OS=Clostridium stercorarium GN=cel... [more]

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Properties
Property NameValue
Genbank descriptionC32011E04EF RVDevelop1 Citrus clementina cDNA clone C32011E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920669 ID=FC920669; Name=FC920669; organism=Citrus clementina; type=EST; length=625bp
CAGCTGCTTCAATTTCATTGTATTAGAGAATTTGCTAAACTGATTCAGCA
GCCAAATTAAGCTTCTTACCACTCACCTTTCACCCACTAGAGAGAAATAC
GGTGCTGCGTTTTTCACCGTTTGAAGACCCTACGCACAAAGCTCTTACTC
TCTTCACCCAATGCCGGCATTTTGAGTTAGATTTAGATCTGAGAACTTGA
CGGCATTGTGTTAAAATGGGGGAGAAATCAAAGTCCAAGGGTTGTTTCGG
ATGGTTCTTGGTCCTAGTCCTATTGGCTCTAGTTGTTGGCGCAATTGTTT
ACACTATTAAAAAGAAAACAAGTCACTCTGATAAACCGGCTCCGGTTCCC
GGTCCCCCCGGCGCCGTCGAGAAAAAGTATGCTGAAGCCCTCAAAGTCGC
AATGCAGTTCTTCGACGTACAAAAATCGGGAAAGTTAGTGAATAATAAGA
TATCATGGAGAGGGGATTCGGCTCTTAAAGATGGAAGAGACATGGGTTTG
GATCTCACAAAAGGCATGTATGATGCTGGGGATCATATGAAGTTTGGGTT
TCCGATGGCTTTTACTGCGACTGTGTTGTCGTGNGCCATCCTTGAGTATG
GAGATCAGATGGACGTTGTGGATCA
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