FC920669

Overview
NameFC920669
Unique NameFC920669
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length625
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11587 contig Ccv1_Contig11587:107..731. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920669 vs. ExPASy Swiss-Prot
Match: GUN23_ORYSJ (Endoglucanase 23 OS=Oryza sativa subsp. japonica GN=GLU12 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 7.407e-18
Identity = 42/80 (52.50%), Postives = 59/80 (73.75%), Query Frame = 3
Query:  378 YAEALKVAMQFFDVQKSGKL--VNNKISWRGDSALKDGRDMGLDLTKGMYDAGDHMKFGFPMAFTATVLSXAILEYGDQM 611
            Y +AL  ++ FF+ Q+SG+L     + +WRGDSA+ DG   G+DL  G YDAGD++KFGFPMAFTAT+L+  ++E+GD M
Sbjct:   42 YGDALAKSILFFEGQRSGRLPAAGQRAAWRGDSAVSDGGAAGVDLEGGYYDAGDNVKFGFPMAFTATMLAWGVVEFGDAM 121          
BLAST of FC920669 vs. ExPASy Swiss-Prot
Match: GUN20_ORYSJ (Endoglucanase 20 OS=Oryza sativa subsp. japonica GN=GLU15 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 7.407e-18
Identity = 42/76 (55.26%), Postives = 58/76 (76.32%), Query Frame = 3
Query:  378 YAEALKVAMQFFDVQKSGKL-VNNKISWRGDSALKDGRDMGLDLTKGMYDAGDHMKFGFPMAFTATVLSXAILEYG 602
            Y +AL  A+ FF+ Q+SG+L  N + +WRGDSAL DGR+  ++LT G YDAGD++KFG+PMAFT T+L  + +EYG
Sbjct:   41 YGDALAKAILFFEGQRSGRLPANQRATWRGDSALTDGREENVNLTGGYYDAGDNVKFGYPMAFTVTLLGWSAVEYG 116          
BLAST of FC920669 vs. ExPASy Swiss-Prot
Match: GUN14_ARATH (Endoglucanase 14 OS=Arabidopsis thaliana GN=At2g44560 PE=2 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 7.407e-18
Identity = 41/81 (50.62%), Postives = 61/81 (75.31%), Query Frame = 3
Query:  372 KKYAEALKVAMQFFDVQKSGKLVNN-KISWRGDSALKDGRDMGLDLTKGMYDAGDHMKFGFPMAFTATVLSXAILEYGDQM 611
            + Y +AL  ++ +F+ Q+SGKL +N +++WRGDSAL+DG D  +DLT G YDAGD+MKFGFP+AF  T+L+ + +E   Q+
Sbjct:   32 RNYGDALTKSLLYFEAQRSGKLPSNQRVTWRGDSALRDGSDAHVDLTGGYYDAGDNMKFGFPLAFFTTMLAWSNIEMATQL 112          
BLAST of FC920669 vs. ExPASy Swiss-Prot
Match: GUNI_CLOTH (Endoglucanase 1 OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=celI PE=1 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.263e-17
Identity = 41/78 (52.56%), Postives = 58/78 (74.36%), Query Frame = 3
Query:  378 YAEALKVAMQFFDVQKSGKLVNN--KISWRGDSALKDGRDMGLDLTKGMYDAGDHMKFGFPMAFTATVLSXAILEYGD 605
            Y EAL+ A+ F++ Q+SGKL  +  +++WRGDS L DG+D G+DLT G YDAGDH+KF  PM+++A +L  A+ EY D
Sbjct:   78 YGEALQKAIFFYECQRSGKLDPSTLRLNWRGDSGLDDGKDAGIDLTGGWYDAGDHVKFNLPMSYSAAMLGWAVYEYED 155          
BLAST of FC920669 vs. ExPASy Swiss-Prot
Match: GUN16_ORYSJ (Endoglucanase 16 OS=Oryza sativa subsp. japonica GN=Os06g0247900 PE=2 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 1.650e-17
Identity = 40/76 (52.63%), Postives = 57/76 (75.00%), Query Frame = 3
Query:  378 YAEALKVAMQFFDVQKSGKLVNN-KISWRGDSALKDGRDMGLDLTKGMYDAGDHMKFGFPMAFTATVLSXAILEYG 602
            Y EAL+ ++ +F+ Q+SG+L +  +++WR  S L DG + G+DL  G YDAGDH+KFG PMAFT T+LS ++LEYG
Sbjct:   31 YEEALRKSLLYFEAQRSGRLPHGQRVAWRDHSGLTDGLEQGVDLVGGYYDAGDHVKFGLPMAFTVTMLSWSLLEYG 106          
BLAST of FC920669 vs. ExPASy Swiss-Prot
Match: GUN15_ORYSJ (Endoglucanase 15 OS=Oryza sativa subsp. japonica GN=Os05g0212300 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.155e-17
Identity = 43/79 (54.43%), Postives = 57/79 (72.15%), Query Frame = 3
Query:  378 YAEALKVAMQFFDVQKSGKLV-NNKISWRGDSALKDGRDMGLDLTKGMYDAGDHMKFGFPMAFTATVLSXAILEYGDQM 611
            YA AL+ ++ +F  Q+SG L  N ++SWR  S L DG+  G+DL  G YDAGD++KFG PMAFT T++S +ILEYG QM
Sbjct:   35 YAMALRKSILYFQAQRSGVLPPNQRVSWRASSGLFDGKANGVDLVGGYYDAGDNVKFGLPMAFTVTMMSWSILEYGKQM 113          
BLAST of FC920669 vs. ExPASy Swiss-Prot
Match: GUN1_PERAE (Endoglucanase 1 OS=Persea americana GN=CEL1 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.676e-17
Identity = 40/76 (52.63%), Postives = 57/76 (75.00%), Query Frame = 3
Query:  378 YAEALKVAMQFFDVQKSGKL-VNNKISWRGDSALKDGRDMGLDLTKGMYDAGDHMKFGFPMAFTATVLSXAILEYG 602
            Y++AL+ ++ FF+ Q+SGKL  N +++WRGDS L DG    +DL  G YDAGD++KFG PMAFT T+L+  I+E+G
Sbjct:   30 YSDALEKSILFFEGQRSGKLPTNQRLTWRGDSGLSDGSSYHVDLVGGYYDAGDNLKFGLPMAFTTTMLAWGIIEFG 105          
BLAST of FC920669 vs. ExPASy Swiss-Prot
Match: GUN1_ORYSJ (Endoglucanase 1 OS=Oryza sativa subsp. japonica GN=GLU7 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.676e-17
Identity = 41/79 (51.90%), Postives = 58/79 (73.42%), Query Frame = 3
Query:  378 YAEALKVAMQFFDVQKSGKLVNN-KISWRGDSALKDGRDMGLDLTKGMYDAGDHMKFGFPMAFTATVLSXAILEYGDQM 611
            Y  AL  ++ +F+ Q+SG L  N +I+WR +S L DG+  G+DL  G YDAGD++KFGFPMAFT T+++ ++LEYG QM
Sbjct:   42 YRMALSKSILYFEAQRSGVLPGNQRIAWRANSGLADGKANGVDLVGGYYDAGDNVKFGFPMAFTVTMMAWSVLEYGKQM 120          
BLAST of FC920669 vs. ExPASy Swiss-Prot
Match: GUN17_ARATH (Endoglucanase 17 OS=Arabidopsis thaliana GN=At4g02290 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.676e-17
Identity = 42/79 (53.16%), Postives = 59/79 (74.68%), Query Frame = 3
Query:  378 YAEALKVAMQFFDVQKSGKLVNN-KISWRGDSALKDGRDMGLDLTKGMYDAGDHMKFGFPMAFTATVLSXAILEYGDQM 611
            Y +AL  ++ FF+ Q+SGKL +N ++SWR DS L DG  + +DL  G YDAGD++KFGFPMAFT T+LS +++E+G  M
Sbjct:   53 YKDALTKSILFFEGQRSGKLPSNQRMSWRRDSGLSDGSALHVDLVGGYYDAGDNIKFGFPMAFTTTMLSWSVIEFGGLM 131          
BLAST of FC920669 vs. ExPASy Swiss-Prot
Match: GUN1_ARATH (Endoglucanase 1 OS=Arabidopsis thaliana GN=CEL2 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 4.801e-17
Identity = 41/79 (51.90%), Postives = 58/79 (73.42%), Query Frame = 3
Query:  378 YAEALKVAMQFFDVQKSGKLV-NNKISWRGDSALKDGRDMGLDLTKGMYDAGDHMKFGFPMAFTATVLSXAILEYGDQM 611
            Y +AL  ++ FF+ Q+SGKL  N +++WR +S L DG  + +DL  G YDAGD+MKFGFPMAFT T+LS +++E+G  M
Sbjct:   44 YKDALSKSILFFEGQRSGKLPPNQRMTWRSNSGLSDGSALNVDLVGGYYDAGDNMKFGFPMAFTTTMLSWSLIEFGGLM 122          
The following BLAST results are available for this feature:
BLAST of FC920669 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
GUN23_ORYSJ7.407e-1852.50Endoglucanase 23 OS=Oryza sativa subsp. japonica G... [more]
GUN20_ORYSJ7.407e-1855.26Endoglucanase 20 OS=Oryza sativa subsp. japonica G... [more]
GUN14_ARATH7.407e-1850.62Endoglucanase 14 OS=Arabidopsis thaliana GN=At2g44... [more]
GUNI_CLOTH1.263e-1752.56Endoglucanase 1 OS=Clostridium thermocellum (strai... [more]
GUN16_ORYSJ1.650e-1752.63Endoglucanase 16 OS=Oryza sativa subsp. japonica G... [more]
GUN15_ORYSJ2.155e-1754.43Endoglucanase 15 OS=Oryza sativa subsp. japonica G... [more]
GUN1_PERAE3.676e-1752.63Endoglucanase 1 OS=Persea americana GN=CEL1 PE=2 S... [more]
GUN1_ORYSJ3.676e-1751.90Endoglucanase 1 OS=Oryza sativa subsp. japonica GN... [more]
GUN17_ARATH3.676e-1753.16Endoglucanase 17 OS=Arabidopsis thaliana GN=At4g02... [more]
GUN1_ARATH4.801e-1751.90Endoglucanase 1 OS=Arabidopsis thaliana GN=CEL2 PE... [more]

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Properties
Property NameValue
Genbank descriptionC32011E04EF RVDevelop1 Citrus clementina cDNA clone C32011E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920669 ID=FC920669; Name=FC920669; organism=Citrus clementina; type=EST; length=625bp
CAGCTGCTTCAATTTCATTGTATTAGAGAATTTGCTAAACTGATTCAGCA
GCCAAATTAAGCTTCTTACCACTCACCTTTCACCCACTAGAGAGAAATAC
GGTGCTGCGTTTTTCACCGTTTGAAGACCCTACGCACAAAGCTCTTACTC
TCTTCACCCAATGCCGGCATTTTGAGTTAGATTTAGATCTGAGAACTTGA
CGGCATTGTGTTAAAATGGGGGAGAAATCAAAGTCCAAGGGTTGTTTCGG
ATGGTTCTTGGTCCTAGTCCTATTGGCTCTAGTTGTTGGCGCAATTGTTT
ACACTATTAAAAAGAAAACAAGTCACTCTGATAAACCGGCTCCGGTTCCC
GGTCCCCCCGGCGCCGTCGAGAAAAAGTATGCTGAAGCCCTCAAAGTCGC
AATGCAGTTCTTCGACGTACAAAAATCGGGAAAGTTAGTGAATAATAAGA
TATCATGGAGAGGGGATTCGGCTCTTAAAGATGGAAGAGACATGGGTTTG
GATCTCACAAAAGGCATGTATGATGCTGGGGATCATATGAAGTTTGGGTT
TCCGATGGCTTTTACTGCGACTGTGTTGTCGTGNGCCATCCTTGAGTATG
GAGATCAGATGGACGTTGTGGATCA
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