FC920669

Overview
NameFC920669
Unique NameFC920669
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length625
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920669 vs. ExPASy Swiss-Prot
Match: GUN19_ARATH (Endoglucanase 19 OS=Arabidopsis thaliana GN=At4g11050 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 4.801e-17
Identity = 40/80 (50.00%), Postives = 56/80 (70.00%), Query Frame = 3
Query:  378 YAEALKVAMQFFDVQKSGKLV-NNKISWRGDSALKDGRDMGLDLTKGMYDAGDHMKFGFPMAFTATVLSXAILEYGDQMD 614
            Y +AL  ++ FF+ Q+SG L  N ++SWR  S L DG+  G+DL  G YDAGD++KFG PMAFT T +  +I+EYG Q++
Sbjct:   27 YKQALSKSILFFEAQRSGHLPPNQRVSWRSHSGLYDGKSSGVDLVGGYYDAGDNVKFGLPMAFTVTTMCWSIIEYGGQLE 106          
BLAST of FC920669 vs. ExPASy Swiss-Prot
Match: GUN17_ORYSJ (Endoglucanase 17 OS=Oryza sativa subsp. japonica GN=GLU13 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 4.801e-17
Identity = 40/76 (52.63%), Postives = 59/76 (77.63%), Query Frame = 3
Query:  378 YAEALKVAMQFFDVQKSGKLV-NNKISWRGDSALKDGRDMGLDLTKGMYDAGDHMKFGFPMAFTATVLSXAILEYG 602
            Y++AL  ++ FF+ Q+SG+L  + ++ WR DSAL DG   G+DLT G YDAGD++KFGFPMAFTAT++S  ++++G
Sbjct:   25 YSDALHKSILFFEGQRSGRLPPDQRLRWRRDSALNDGATAGVDLTGGYYDAGDNVKFGFPMAFTATLMSWGLIDFG 100          
BLAST of FC920669 vs. ExPASy Swiss-Prot
Match: GUN3_ORYSJ (Endoglucanase 3 OS=Oryza sativa subsp. japonica GN=GLU8 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 8.189e-17
Identity = 40/79 (50.63%), Postives = 59/79 (74.68%), Query Frame = 3
Query:  378 YAEALKVAMQFFDVQKSGKLV-NNKISWRGDSALKDGRDMGLDLTKGMYDAGDHMKFGFPMAFTATVLSXAILEYGDQM 611
            Y +AL  ++ FF+ Q+SGKL  + ++SWRGDS L DG  + +DL  G YDAGD+MKFGFP+AF+ T+L+ +++E+G  M
Sbjct:   36 YRDALTKSILFFEGQRSGKLPPSQRVSWRGDSGLSDGSSIKVDLVGGYYDAGDNMKFGFPLAFSMTMLAWSVVEFGGLM 114          
BLAST of FC920669 vs. ExPASy Swiss-Prot
Match: GUN6_ARATH (Endoglucanase 6 OS=Arabidopsis thaliana GN=At1g64390 PE=2 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.397e-16
Identity = 37/79 (46.84%), Postives = 58/79 (73.42%), Query Frame = 3
Query:  378 YAEALKVAMQFFDVQKSGKLVNN-KISWRGDSALKDGRDMGLDLTKGMYDAGDHMKFGFPMAFTATVLSXAILEYGDQM 611
            Y +AL  ++ FF+ Q+SG L  N +++WR  S L DG+  G++L  G YDAGD++KFG PMAFT T+++ +++EYG+Q+
Sbjct:   26 YGQALSKSLLFFEAQRSGVLPRNQRVTWRSHSGLTDGKSSGVNLVGGYYDAGDNVKFGLPMAFTVTMMAWSVIEYGNQL 104          
BLAST of FC920669 vs. ExPASy Swiss-Prot
Match: GUN3_ARATH (Endoglucanase 3 OS=Arabidopsis thaliana GN=CEL5 PE=2 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 2.383e-16
Identity = 42/79 (53.16%), Postives = 56/79 (70.89%), Query Frame = 3
Query:  378 YAEALKVAMQFFDVQKSGKLVNNK-ISWRGDSALKDGRDMGLDLTKGMYDAGDHMKFGFPMAFTATVLSXAILEYGDQM 611
            Y EAL  ++ FF  Q+SG+L +++ +SWR  S L DG    +DLT G YDAGD++KF FPMAFT T+LS + LEYG +M
Sbjct:   25 YREALSKSLLFFQGQRSGRLPSDQQLSWRSSSGLSDGSSAHVDLTGGYYDAGDNVKFNFPMAFTTTMLSWSSLEYGKKM 103          
BLAST of FC920669 vs. ExPASy Swiss-Prot
Match: GUN13_ORYSJ (Endoglucanase 13 OS=Oryza sativa subsp. japonica GN=GLU6 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.383e-16
Identity = 39/79 (49.37%), Postives = 55/79 (69.62%), Query Frame = 3
Query:  378 YAEALKVAMQFFDVQKSGKLVNNK-ISWRGDSALKDGRDMGLDLTKGMYDAGDHMKFGFPMAFTATVLSXAILEYGDQM 611
            YA A    + FF+ Q+SGKL +++ + WRGDSAL DG   G+DL  G YD+GDH+KFG PMA+  T+LS  ++E+  +M
Sbjct:   39 YAGAFDKCLLFFEAQRSGKLPDDRLVRWRGDSALTDGFSQGVDLVGGYYDSGDHVKFGLPMAYAVTMLSWGVVEFEKEM 117          
BLAST of FC920669 vs. ExPASy Swiss-Prot
Match: GUN13_ORYSI (Endoglucanase 13 OS=Oryza sativa subsp. indica GN=GLU6 PE=3 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 2.383e-16
Identity = 39/79 (49.37%), Postives = 55/79 (69.62%), Query Frame = 3
Query:  378 YAEALKVAMQFFDVQKSGKLVNNK-ISWRGDSALKDGRDMGLDLTKGMYDAGDHMKFGFPMAFTATVLSXAILEYGDQM 611
            YA A    + FF+ Q+SGKL +++ + WRGDSAL DG   G+DL  G YD+GDH+KFG PMA+  T+LS  ++E+  +M
Sbjct:   39 YAGAFDKCLLFFEAQRSGKLPDDRLVRWRGDSALTDGFSQGVDLVGGYYDSGDHVKFGLPMAYAVTMLSWGVVEFEKEM 117          
BLAST of FC920669 vs. ExPASy Swiss-Prot
Match: GUN11_ORYSJ (Endoglucanase 11 OS=Oryza sativa subsp. japonica GN=GLU4 PE=2 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 4.064e-16
Identity = 40/79 (50.63%), Postives = 56/79 (70.89%), Query Frame = 3
Query:  378 YAEALKVAMQFFDVQKSGKLVNNK-ISWRGDSALKDGRDMGLDLTKGMYDAGDHMKFGFPMAFTATVLSXAILEYGDQM 611
            YA+AL  ++ FF  Q+SG+L  ++ + WR +S L DG    +DLT G YD GD++KFGFPMAFT T+LS  ++EYG +M
Sbjct:   42 YADALAKSILFFQGQRSGRLPPDQAVKWRSNSGLSDGSAANVDLTGGYYDGGDNVKFGFPMAFTTTMLSWGVVEYGGRM 120          
BLAST of FC920669 vs. ExPASy Swiss-Prot
Match: GUN7_ARATH (Endoglucanase 7 OS=Arabidopsis thaliana GN=KOR2 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 6.933e-16
Identity = 44/84 (52.38%), Postives = 56/84 (66.67%), Query Frame = 3
Query:  378 YAEALKVAMQFFDVQKSGKLVN-NKISWRGDSALKDGR-DMGLDLTKGMYDAGDHMKFGFPMAFTATVLSXAILEYGDQMDVVD 623
            Y  AL  A+QFFD QKSGKL   NK+SWRGDS  KDG  D+   L  G YD G ++KF FPMAF+ T+LS +++EY  +   +D
Sbjct:  117 YTLALHKALQFFDAQKSGKLPKKNKVSWRGDSGTKDGLPDVVGGLVGGYYDGGSNVKFHFPMAFSMTMLSWSLIEYSHKYKAID 200          
BLAST of FC920669 vs. ExPASy Swiss-Prot
Match: GUN22_ORYSJ (Endoglucanase 22 OS=Oryza sativa subsp. japonica GN=GLU11 PE=2 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 6.933e-16
Identity = 37/75 (49.33%), Postives = 54/75 (72.00%), Query Frame = 3
Query:  378 YAEALKVAMQFFDVQKSGKL-VNNKISWRGDSALKDGRDMGLDLTKGMYDAGDHMKFGFPMAFTATVLSXAILEY 599
            Y EAL+ ++ +F+ Q+SG+L  + +++WRG S L DG   G+DL  G YDAGDH+KFG PMAFT T+LS   +++
Sbjct:   56 YREALEKSLLYFEAQRSGRLPYSQRVTWRGHSGLTDGLQQGVDLVGGYYDAGDHVKFGLPMAFTVTMLSWGAIDF 130          
The following BLAST results are available for this feature:
BLAST of FC920669 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
GUN19_ARATH4.801e-1750.00Endoglucanase 19 OS=Arabidopsis thaliana GN=At4g11... [more]
GUN17_ORYSJ4.801e-1752.63Endoglucanase 17 OS=Oryza sativa subsp. japonica G... [more]
GUN3_ORYSJ8.189e-1750.63Endoglucanase 3 OS=Oryza sativa subsp. japonica GN... [more]
GUN6_ARATH1.397e-1646.84Endoglucanase 6 OS=Arabidopsis thaliana GN=At1g643... [more]
GUN3_ARATH2.383e-1653.16Endoglucanase 3 OS=Arabidopsis thaliana GN=CEL5 PE... [more]
GUN13_ORYSJ2.383e-1649.37Endoglucanase 13 OS=Oryza sativa subsp. japonica G... [more]
GUN13_ORYSI2.383e-1649.37Endoglucanase 13 OS=Oryza sativa subsp. indica GN=... [more]
GUN11_ORYSJ4.064e-1650.63Endoglucanase 11 OS=Oryza sativa subsp. japonica G... [more]
GUN7_ARATH6.933e-1652.38Endoglucanase 7 OS=Arabidopsis thaliana GN=KOR2 PE... [more]
GUN22_ORYSJ6.933e-1649.33Endoglucanase 22 OS=Oryza sativa subsp. japonica G... [more]

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Properties
Property NameValue
Genbank descriptionC32011E04EF RVDevelop1 Citrus clementina cDNA clone C32011E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920669 ID=FC920669; Name=FC920669; organism=Citrus clementina; type=EST; length=625bp
CAGCTGCTTCAATTTCATTGTATTAGAGAATTTGCTAAACTGATTCAGCA
GCCAAATTAAGCTTCTTACCACTCACCTTTCACCCACTAGAGAGAAATAC
GGTGCTGCGTTTTTCACCGTTTGAAGACCCTACGCACAAAGCTCTTACTC
TCTTCACCCAATGCCGGCATTTTGAGTTAGATTTAGATCTGAGAACTTGA
CGGCATTGTGTTAAAATGGGGGAGAAATCAAAGTCCAAGGGTTGTTTCGG
ATGGTTCTTGGTCCTAGTCCTATTGGCTCTAGTTGTTGGCGCAATTGTTT
ACACTATTAAAAAGAAAACAAGTCACTCTGATAAACCGGCTCCGGTTCCC
GGTCCCCCCGGCGCCGTCGAGAAAAAGTATGCTGAAGCCCTCAAAGTCGC
AATGCAGTTCTTCGACGTACAAAAATCGGGAAAGTTAGTGAATAATAAGA
TATCATGGAGAGGGGATTCGGCTCTTAAAGATGGAAGAGACATGGGTTTG
GATCTCACAAAAGGCATGTATGATGCTGGGGATCATATGAAGTTTGGGTT
TCCGATGGCTTTTACTGCGACTGTGTTGTCGTGNGCCATCCTTGAGTATG
GAGATCAGATGGACGTTGTGGATCA
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