FC920669

Overview
NameFC920669
Unique NameFC920669
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length625
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920669 vs. ExPASy Swiss-Prot
Match: GUN2_ORYSJ (Endoglucanase 2 OS=Oryza sativa subsp. japonica GN=GLU5 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 9.054e-16
Identity = 37/79 (46.84%), Postives = 58/79 (73.42%), Query Frame = 3
Query:  378 YAEALKVAMQFFDVQKSGKLVNN-KISWRGDSALKDGRDMGLDLTKGMYDAGDHMKFGFPMAFTATVLSXAILEYGDQM 611
            Y  AL  ++ +F+ Q+SG L  + +I+WR +S L DG+  G+DL  G YDAGD++KFG PMAFT T+++ +++EYG++M
Sbjct:   41 YGMALSKSILYFEAQRSGVLPGSQRIAWRANSGLADGKANGVDLVGGYYDAGDNVKFGLPMAFTVTMMAWSVIEYGEEM 119          
BLAST of FC920669 vs. ExPASy Swiss-Prot
Match: GUNG_CLOCE (Endoglucanase G OS=Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) GN=celCCG PE=1 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 1.544e-15
Identity = 37/80 (46.25%), Postives = 57/80 (71.25%), Query Frame = 3
Query:  378 YAEALKVAMQFFDVQKSGKL-VNNKISWRGDSALKDGRDMGLDLTKGMYDAGDHMKFGFPMAFTATVLSXAILEYGDQMD 614
            Y EAL+ ++ F++ Q+SG L  + + +WR DS +KDG D+G+DLT G YDAGDH+KF  PM++T+ +L+ ++ E  D  D
Sbjct:   41 YGEALQKSIMFYEFQRSGDLPADKRDNWRDDSGMKDGSDVGVDLTGGWYDAGDHVKFNLPMSYTSAMLAWSLYEDKDAYD 120          
BLAST of FC920669 vs. ExPASy Swiss-Prot
Match: GUN6_ORYSJ (Endoglucanase 6 OS=Oryza sativa subsp. japonica GN=Os02g0733300 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.544e-15
Identity = 38/76 (50.00%), Postives = 56/76 (73.68%), Query Frame = 3
Query:  378 YAEALKVAMQFFDVQKSGKLV-NNKISWRGDSALKDGRDMGLDLTKGMYDAGDHMKFGFPMAFTATVLSXAILEYG 602
            Y +AL  ++ FF+ Q+SG+L  + ++ WR DS L DG    +DLT G YDAGD++KFGFPMAFTAT++S  ++++G
Sbjct:   37 YGDALHKSILFFEGQRSGRLPPDQRLRWRRDSGLHDGAAASVDLTGGYYDAGDNVKFGFPMAFTATLMSWGLIDFG 112          
BLAST of FC920669 vs. ExPASy Swiss-Prot
Match: GUN16_ARATH (Endoglucanase 16 OS=Arabidopsis thaliana GN=At3g43860 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.544e-15
Identity = 38/79 (48.10%), Postives = 57/79 (72.15%), Query Frame = 3
Query:  378 YAEALKVAMQFFDVQKSGKLV-NNKISWRGDSALKDGRDMGLDLTKGMYDAGDHMKFGFPMAFTATVLSXAILEYGDQM 611
            Y +AL  ++ F + Q+SGKL  NN++ WRGDSAL DG+ + +DL+ G YDAGD++K+G PMAFT T L+ + + Y  ++
Sbjct:   35 YKDALTKSLIFLEAQRSGKLPPNNRVPWRGDSALDDGKLVNVDLSGGYYDAGDNVKYGLPMAFTITTLAWSTITYEKEL 113          
BLAST of FC920669 vs. ExPASy Swiss-Prot
Match: GUN_PHAVU (Endoglucanase OS=Phaseolus vulgaris PE=2 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 2.017e-15
Identity = 40/83 (48.19%), Postives = 61/83 (73.49%), Query Frame = 3
Query:  378 YAEALKVAMQFFDVQKSGKLVNN-KISWRGDSALKDGRDMGLDLTKGMYDAGDHMKFGFPMAFTATVLSXAILEYGDQMDVVD 623
            YA+AL  A+ FF+ Q+SGKL ++ ++ WR DSAL DG+   ++L  G YDAGD++KFG+PMAF+ ++LS A +EY  ++  V+
Sbjct:   41 YADALAKAILFFEGQRSGKLPSSQRVKWREDSALSDGKLQNVNLMGGYYDAGDNVKFGWPMAFSTSLLSWAAVEYESEISSVN 123          
BLAST of FC920669 vs. ExPASy Swiss-Prot
Match: GUN21_ORYSJ (Endoglucanase 21 OS=Oryza sativa subsp. japonica GN=GLU9 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.017e-15
Identity = 39/79 (49.37%), Postives = 53/79 (67.09%), Query Frame = 3
Query:  378 YAEALKVAMQFFDVQKSGKL-VNNKISWRGDSALKDGRDMGLDLTKGMYDAGDHMKFGFPMAFTATVLSXAILEYGDQM 611
            Y +AL   + +F+ Q+SG L  N ++ WRG S L DG   G+DL  G YDAGD++KFG PMAFT T+LS A  E+ D++
Sbjct:   37 YKKALHSGLLYFEAQRSGHLPYNQRVRWRGHSGLADGLQQGVDLVGGYYDAGDNVKFGLPMAFTMTMLSWAAAEFWDEI 115          
BLAST of FC920669 vs. ExPASy Swiss-Prot
Match: GUN19_ORYSJ (Endoglucanase 19 OS=Oryza sativa subsp. japonica GN=Os08g0114200 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.017e-15
Identity = 39/79 (49.37%), Postives = 56/79 (70.89%), Query Frame = 3
Query:  378 YAEALKVAMQFFDVQKSGKLV-NNKISWRGDSALKDGRDMGLDLTKGMYDAGDHMKFGFPMAFTATVLSXAILEYGDQM 611
            YA+AL  ++ FF+ Q+SGKL   N++ WR DS L DG    +DL  G YDAGD++KFG PMAF+ T+L+ ++L++G  M
Sbjct:   55 YADALAKSIIFFEGQRSGKLPPGNRMPWRADSGLTDGAQYNVDLVGGYYDAGDNVKFGLPMAFSTTMLAWSVLDFGKFM 133          
BLAST of FC920669 vs. ExPASy Swiss-Prot
Match: GUN24_ARATH (Endoglucanase 24 OS=Arabidopsis thaliana GN=At4g39010 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.634e-15
Identity = 38/79 (48.10%), Postives = 59/79 (74.68%), Query Frame = 3
Query:  378 YAEALKVAMQFFDVQKSGKLVNN-KISWRGDSALKDGRDMGLDLTKGMYDAGDHMKFGFPMAFTATVLSXAILEYGDQM 611
            Y++AL  ++ FF+ Q+SG L N+ +++WR +S L DG    +DLT G YDAGD++KF FPMAFT T+L+ +++E+G+ M
Sbjct:   30 YSDALSKSILFFEGQRSGYLPNDQRMTWRRNSGLSDGWTHNIDLTGGYYDAGDNVKFNFPMAFTTTMLAWSVIEFGEFM 108          
BLAST of FC920669 vs. ExPASy Swiss-Prot
Match: GUN9_ARATH (Endoglucanase 9 OS=Arabidopsis thaliana GN=CEL3 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.441e-15
Identity = 42/79 (53.16%), Postives = 52/79 (65.82%), Query Frame = 3
Query:  378 YAEALKVAMQFFDVQKSGKLVNNK-ISWRGDSALKDGRDMGLDLTKGMYDAGDHMKFGFPMAFTATVLSXAILEYGDQM 611
            Y EAL  ++ FF  Q+SG L   + ISWR  S L DG    +DLT G YDAGD++KF  PMAFT T+LS + LEYG +M
Sbjct:   25 YKEALSKSLLFFQGQRSGPLPRGQQISWRASSGLSDGSAAHVDLTGGYYDAGDNVKFNLPMAFTTTMLSWSALEYGKRM 103          
BLAST of FC920669 vs. ExPASy Swiss-Prot
Match: GUN18_ARATH (Endoglucanase 18 OS=Arabidopsis thaliana GN=At4g09740 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.441e-15
Identity = 39/83 (46.99%), Postives = 57/83 (68.67%), Query Frame = 3
Query:  378 YAEALKVAMQFFDVQKSGKL-VNNKISWRGDSALKDGRDMGLDLTKGMYDAGDHMKFGFPMAFTATVLSXAILEYGDQMDVVD 623
            Y +AL  ++ FF+ Q+SGKL  N ++ WR DS L DG    ++L  G YDAGD++KF +PM+FT T+LS A LEY +++  V+
Sbjct:   24 YGDALNKSILFFEGQRSGKLPTNQRVKWRADSGLSDGASANVNLIGGYYDAGDNVKFVWPMSFTTTLLSWAALEYQNEITFVN 106          
The following BLAST results are available for this feature:
BLAST of FC920669 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
GUN2_ORYSJ9.054e-1646.84Endoglucanase 2 OS=Oryza sativa subsp. japonica GN... [more]
GUNG_CLOCE1.544e-1546.25Endoglucanase G OS=Clostridium cellulolyticum (str... [more]
GUN6_ORYSJ1.544e-1550.00Endoglucanase 6 OS=Oryza sativa subsp. japonica GN... [more]
GUN16_ARATH1.544e-1548.10Endoglucanase 16 OS=Arabidopsis thaliana GN=At3g43... [more]
GUN_PHAVU2.017e-1548.19Endoglucanase OS=Phaseolus vulgaris PE=2 SV=2[more]
GUN21_ORYSJ2.017e-1549.37Endoglucanase 21 OS=Oryza sativa subsp. japonica G... [more]
GUN19_ORYSJ2.017e-1549.37Endoglucanase 19 OS=Oryza sativa subsp. japonica G... [more]
GUN24_ARATH2.634e-1548.10Endoglucanase 24 OS=Arabidopsis thaliana GN=At4g39... [more]
GUN9_ARATH3.441e-1553.16Endoglucanase 9 OS=Arabidopsis thaliana GN=CEL3 PE... [more]
GUN18_ARATH3.441e-1546.99Endoglucanase 18 OS=Arabidopsis thaliana GN=At4g09... [more]

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Properties
Property NameValue
Genbank descriptionC32011E04EF RVDevelop1 Citrus clementina cDNA clone C32011E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920669 ID=FC920669; Name=FC920669; organism=Citrus clementina; type=EST; length=625bp
CAGCTGCTTCAATTTCATTGTATTAGAGAATTTGCTAAACTGATTCAGCA
GCCAAATTAAGCTTCTTACCACTCACCTTTCACCCACTAGAGAGAAATAC
GGTGCTGCGTTTTTCACCGTTTGAAGACCCTACGCACAAAGCTCTTACTC
TCTTCACCCAATGCCGGCATTTTGAGTTAGATTTAGATCTGAGAACTTGA
CGGCATTGTGTTAAAATGGGGGAGAAATCAAAGTCCAAGGGTTGTTTCGG
ATGGTTCTTGGTCCTAGTCCTATTGGCTCTAGTTGTTGGCGCAATTGTTT
ACACTATTAAAAAGAAAACAAGTCACTCTGATAAACCGGCTCCGGTTCCC
GGTCCCCCCGGCGCCGTCGAGAAAAAGTATGCTGAAGCCCTCAAAGTCGC
AATGCAGTTCTTCGACGTACAAAAATCGGGAAAGTTAGTGAATAATAAGA
TATCATGGAGAGGGGATTCGGCTCTTAAAGATGGAAGAGACATGGGTTTG
GATCTCACAAAAGGCATGTATGATGCTGGGGATCATATGAAGTTTGGGTT
TCCGATGGCTTTTACTGCGACTGTGTTGTCGTGNGCCATCCTTGAGTATG
GAGATCAGATGGACGTTGTGGATCA
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