FC920669

Overview
NameFC920669
Unique NameFC920669
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length625
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11587 contig Ccv1_Contig11587:107..731. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920669 vs. ExPASy Swiss-Prot
Match: GUN20_ARATH (Endoglucanase 20 OS=Arabidopsis thaliana GN=At4g23560 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.494e-15
Identity = 39/84 (46.43%), Postives = 59/84 (70.24%), Query Frame = 3
Query:  375 KYAEALKVAMQFFDVQKSGKL-VNNKISWRGDSALKDGRDMGLDLTKGMYDAGDHMKFGFPMAFTATVLSXAILEYGDQMDVVD 623
            +Y +AL  ++ FF+ Q+SGKL  N ++ WR DSAL DG    ++L  G YDAGD++KF +PM+FT T+LS A +EY +++  V+
Sbjct:   23 EYGDALNKSILFFEGQRSGKLPTNQRVKWRADSALSDGSLANVNLIGGYYDAGDNVKFVWPMSFTTTLLSWAAIEYQNEISSVN 106          
BLAST of FC920669 vs. ExPASy Swiss-Prot
Match: GUN23_ARATH (Endoglucanase 23 OS=Arabidopsis thaliana GN=At4g39000 PE=2 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 7.665e-15
Identity = 38/83 (45.78%), Postives = 61/83 (73.49%), Query Frame = 3
Query:  378 YAEALKVAMQFFDVQKSGKLVNN-KISWRGDSALKDGRDMGLDLTKGMYDAGDHMKFGFPMAFTATVLSXAILEYGDQMDVVD 623
            Y++AL+ ++ FF+ Q+SG+L    +++WR +SAL DG+++  DL  G YDAGD++KF FPMAFTAT+L+ + +++G  M   D
Sbjct:   26 YSDALRKSILFFEGQRSGRLPKQQRMAWRRNSALNDGKNLKTDLVGGYYDAGDNVKFHFPMAFTATMLAWSSVDFGRYMSQHD 108          
BLAST of FC920669 vs. ExPASy Swiss-Prot
Match: GUN22_ARATH (Endoglucanase 22 OS=Arabidopsis thaliana GN=At4g38990 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.665e-15
Identity = 37/83 (44.58%), Postives = 59/83 (71.08%), Query Frame = 3
Query:  378 YAEALKVAMQFFDVQKSGKLVNN-KISWRGDSALKDGRDMGLDLTKGMYDAGDHMKFGFPMAFTATVLSXAILEYGDQMDVVD 623
            Y++AL  ++ FF+ Q+SG L    +++WR +SAL DG+++ +DL  G YDAGD++KF FPMAFT T+L+ + +++G  M   D
Sbjct:   24 YSDALTKSILFFEGQRSGYLPREQRMTWRHNSALNDGKNLNVDLVGGYYDAGDNIKFHFPMAFTTTMLAWSAIDFGSYMSPAD 106          
BLAST of FC920669 vs. ExPASy Swiss-Prot
Match: GUN9_ORYSJ (Endoglucanase 9 OS=Oryza sativa subsp. japonica GN=GLU1 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.307e-14
Identity = 40/85 (47.06%), Postives = 56/85 (65.88%), Query Frame = 3
Query:  378 YAEALKVAMQFFDVQKSGKLV-NNKISWRGDSALKDGRD---MGLDLTKGMYDAGDHMKFGFPMAFTATVLSXAILEYGDQMDVV 620
            +  AL+ A+ FF+ QKSGKL  NN + WRG+S +KDG     +G  L  G YDAGD +KF FP AF+ T+LS +++EY  + + V
Sbjct:  112 FTVALRKALMFFNAQKSGKLPKNNNVHWRGNSCMKDGLSDPAVGRSLVGGYYDAGDAVKFNFPAAFSMTLLSWSVIEYSAKYEAV 196          
BLAST of FC920669 vs. ExPASy Swiss-Prot
Match: GUN8_ORYSJ (Endoglucanase 8 OS=Oryza sativa subsp. japonica GN=Os02g0778600 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.913e-14
Identity = 35/79 (44.30%), Postives = 54/79 (68.35%), Query Frame = 3
Query:  378 YAEALKVAMQFFDVQKSGKLV-NNKISWRGDSALKDGRDMGLDLTKGMYDAGDHMKFGFPMAFTATVLSXAILEYGDQM 611
            Y +AL  ++ F + Q+SGKL   N+I WRGDS ++DG+   +DLT G YDAGD++K+G P+AFT T L+   + +  ++
Sbjct:   43 YKDALTKSIMFLEAQRSGKLPPTNRIKWRGDSGMEDGKLANVDLTGGYYDAGDNVKYGLPLAFTVTTLAWTAMAFEKEL 121          
BLAST of FC920669 vs. ExPASy Swiss-Prot
Match: GUN5_ARATH (Endoglucanase 5 OS=Arabidopsis thaliana GN=At1g48930 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.913e-14
Identity = 38/74 (51.35%), Postives = 47/74 (63.51%), Query Frame = 3
Query:  378 YAEALKVAMQFFDVQKSGKL-VNNKISWRGDSALKDGRDMGLDLTKGMYDAGDHMKFGFPMAFTATVLSXAILE 596
            Y  AL     FF+ Q+SGKL    ++ WRG S LKDG   G+ L  G YDAGDH+KFG PMAF  T+LS A ++
Sbjct:   31 YGSALDKTFLFFEAQRSGKLPAAQRVKWRGPSGLKDGLAQGVSLEGGYYDAGDHVKFGLPMAFAVTMLSWAAVD 104          
BLAST of FC920669 vs. ExPASy Swiss-Prot
Match: GUN14_ORYSJ (Endoglucanase 14 OS=Oryza sativa subsp. japonica GN=Os05g0129200 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.913e-14
Identity = 42/106 (39.62%), Postives = 60/106 (56.60%), Query Frame = 3
Query:  378 YAEALKVAMQFFDVQKSGKLVN-NKISWRGDSALKDGRD--------------------------MGLDLTKGMYDAGDHMKFGFPMAFTATVLSXAILEYGDQMD 614
            Y  AL +++ +F+ Q+SG+L    ++ WR DSAL DG D                          M +DLT G YD+GD++KFGFPMAFT   LS +++EYGD++D
Sbjct:   25 YRAALAMSLLYFEGQRSGRLPPAQRVQWRADSALADGADHRVPDLASPPSSNVSVCARTDAMQCDMQVDLTGGYYDSGDNVKFGFPMAFTVAALSWSVVEYGDRLD 130          
BLAST of FC920669 vs. ExPASy Swiss-Prot
Match: GUN25_ARATH (Endoglucanase 25 OS=Arabidopsis thaliana GN=KOR PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.804e-14
Identity = 40/79 (50.63%), Postives = 54/79 (68.35%), Query Frame = 3
Query:  378 YAEALKVAMQFFDVQKSGKLV-NNKISWRGDSALKDGR----DMGLDLTKGMYDAGDHMKFGFPMAFTATVLSXAILEY 599
            Y  AL  A++FF+ QKSGKL  +N +SWRG+S L+DG+        DL  G YDAGD +KF FPMA+  T+LS +++EY
Sbjct:  109 YTIALHKALKFFNAQKSGKLPKHNNVSWRGNSGLQDGKGETGSFYKDLVGGYYDAGDAIKFNFPMAYAMTMLSWSVIEY 187          
BLAST of FC920669 vs. ExPASy Swiss-Prot
Match: GUN12_ORYSJ (Endoglucanase 12 OS=Oryza sativa subsp. japonica GN=GLU3 PE=2 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 3.804e-14
Identity = 41/86 (47.67%), Postives = 57/86 (66.28%), Query Frame = 3
Query:  375 KYAEALKVAMQFFDVQKSGKLV-NNKISWRGDSALKDGRDMGL---DLTKGMYDAGDHMKFGFPMAFTATVLSXAILEYGDQMDVV 620
            +Y +AL  A+ FF+ QKSG+L  NN I WRG+S L DG D+      L  G YDAGD++KF FP+AF+ T+LS +++EY  +   V
Sbjct:  110 QYTDALHKALLFFNAQKSGRLPKNNGIKWRGNSGLSDGSDLTDVKGGLVGGYYDAGDNIKFHFPLAFSMTMLSWSVIEYSAKYKAV 195          
BLAST of FC920669 vs. ExPASy Swiss-Prot
Match: GUN21_ARATH (Endoglucanase 21 OS=Arabidopsis thaliana GN=KOR3 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.107e-13
Identity = 40/80 (50.00%), Postives = 55/80 (68.75%), Query Frame = 3
Query:  378 YAEALKVAMQFFDVQKSGKLVNN--KISWRGDSALKDGR-DMGL---DLTKGMYDAGDHMKFGFPMAFTATVLSXAILEY 599
            Y  AL+ A++FF+ Q+SGKL  N   +SWR DS L+DG+ D G    DL  G YDAGD +KF FPM++  T+LS +++EY
Sbjct:  109 YTIALRTALKFFNAQQSGKLPKNIYNVSWRHDSCLQDGKGDPGQCYKDLVGGYYDAGDSIKFNFPMSYAMTMLSWSVIEY 188          
The following BLAST results are available for this feature:
BLAST of FC920669 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
GUN20_ARATH4.494e-1546.43Endoglucanase 20 OS=Arabidopsis thaliana GN=At4g23... [more]
GUN23_ARATH7.665e-1545.78Endoglucanase 23 OS=Arabidopsis thaliana GN=At4g39... [more]
GUN22_ARATH7.665e-1544.58Endoglucanase 22 OS=Arabidopsis thaliana GN=At4g38... [more]
GUN9_ORYSJ1.307e-1447.06Endoglucanase 9 OS=Oryza sativa subsp. japonica GN... [more]
GUN8_ORYSJ2.913e-1444.30Endoglucanase 8 OS=Oryza sativa subsp. japonica GN... [more]
GUN5_ARATH2.913e-1451.35Endoglucanase 5 OS=Arabidopsis thaliana GN=At1g489... [more]
GUN14_ORYSJ2.913e-1439.62Endoglucanase 14 OS=Oryza sativa subsp. japonica G... [more]
GUN25_ARATH3.804e-1450.63Endoglucanase 25 OS=Arabidopsis thaliana GN=KOR PE... [more]
GUN12_ORYSJ3.804e-1447.67Endoglucanase 12 OS=Oryza sativa subsp. japonica G... [more]
GUN21_ARATH1.107e-1350.00Endoglucanase 21 OS=Arabidopsis thaliana GN=KOR3 P... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32011E04EF RVDevelop1 Citrus clementina cDNA clone C32011E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920669 ID=FC920669; Name=FC920669; organism=Citrus clementina; type=EST; length=625bp
CAGCTGCTTCAATTTCATTGTATTAGAGAATTTGCTAAACTGATTCAGCA
GCCAAATTAAGCTTCTTACCACTCACCTTTCACCCACTAGAGAGAAATAC
GGTGCTGCGTTTTTCACCGTTTGAAGACCCTACGCACAAAGCTCTTACTC
TCTTCACCCAATGCCGGCATTTTGAGTTAGATTTAGATCTGAGAACTTGA
CGGCATTGTGTTAAAATGGGGGAGAAATCAAAGTCCAAGGGTTGTTTCGG
ATGGTTCTTGGTCCTAGTCCTATTGGCTCTAGTTGTTGGCGCAATTGTTT
ACACTATTAAAAAGAAAACAAGTCACTCTGATAAACCGGCTCCGGTTCCC
GGTCCCCCCGGCGCCGTCGAGAAAAAGTATGCTGAAGCCCTCAAAGTCGC
AATGCAGTTCTTCGACGTACAAAAATCGGGAAAGTTAGTGAATAATAAGA
TATCATGGAGAGGGGATTCGGCTCTTAAAGATGGAAGAGACATGGGTTTG
GATCTCACAAAAGGCATGTATGATGCTGGGGATCATATGAAGTTTGGGTT
TCCGATGGCTTTTACTGCGACTGTGTTGTCGTGNGCCATCCTTGAGTATG
GAGATCAGATGGACGTTGTGGATCA
back to top