FC920672
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC920672 vs. ExPASy Swiss-Prot
Match: PS10A_ARATH (26S protease regulatory subunit 10B homolog A OS=Arabidopsis thaliana GN=RPT4A PE=2 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 2.660e-13 Identity = 35/104 (33.65%), Postives = 62/104 (59.62%), Query Frame = 1 Query: 367 EDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPR 678 ++ + ++ ++VVG KV + G RV +D I LP ++DP V M E+ +++Y+ VGG +QI ++RE +ELP+++PE F+++GI PP+ Sbjct: 71 DNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNISYSAVGGLGDQIRELRESIELPLMNPELFLRVGIKPPK 174
BLAST of FC920672 vs. ExPASy Swiss-Prot
Match: PSMR_METB6 (Proteasome-activating nucleotidase OS=Methanoregula boonei (strain 6A8) GN=pan PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 3.475e-13 Identity = 39/119 (32.77%), Postives = 62/119 (52.10%), Query Frame = 1 Query: 322 PLQVARCTKIISPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPR 678 PL + ++ N + ++ +F+V V+P DI+ G R +++ I LP D V M + + P Y D+GG KEQI ++RE VELP+ PE F ++GI+PP+ Sbjct: 99 PLIIGTVVDVVDAN----RVIVRSSAGPRFLVRSSPSVNPDDIKPGARCTLNQQSLAIVELLPSSFDAQVYGMELVDSPQECYTDIGGLKEQINEVREAVELPLKRPELFTQIGIEPPK 213
BLAST of FC920672 vs. ExPASy Swiss-Prot
Match: PSMR_UNCMA (Proteasome-activating nucleotidase OS=Uncultured methanogenic archaeon RC-I GN=pan PE=3 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 4.538e-13 Identity = 36/103 (34.95%), Postives = 59/103 (57.28%), Query Frame = 1 Query: 370 DAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPR 678 + K +I KFVV ++ ++ G +V +++ + LP DPSV M V + P++ Y +GG + QI +++E VELP+L PE F K+GI+PP+ Sbjct: 92 NGKMIIKSSTGPKFVVNSSQFINSKEVYPGAKVALNQQSLAVIEVLPTVKDPSVLGMEVVDSPEIDYQSIGGLEAQINELKETVELPLLKPELFQKVGIEPPK 194
BLAST of FC920672 vs. ExPASy Swiss-Prot
Match: PRS6A_DICDI (26S protease regulatory subunit 6A homolog OS=Dictyostelium discoideum GN=psmC3 PE=1 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 5.927e-13 Identity = 47/140 (33.57%), Postives = 75/140 (53.57%), Query Frame = 1 Query: 292 SDKQMMQEEQPLQVARCTKIISP----NSEDAKYVINVKQIAKFVVGLG-------DKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPR 678 +DK + + P VA +II ++ +K V+ VK + + L DK+ P D+ VG++++ Y I LPP+ D V M ++EKP Y+D+GG +QI+++ E V LPM H E+F +GI PP+ Sbjct: 70 NDKLQVNTQLPHLVANVVEIIDMVLDGETQPSKCVV-VKASTRQTIFLAYPGIVDVDKLRPGDL-----VGINKDSYIILDTLPPEYDSRVKAMEIDEKPTEEYSDIGGLDKQIQELVEAVVLPMTHKERFESIGIKPPK 203
BLAST of FC920672 vs. ExPASy Swiss-Prot
Match: PSMR_SULTO (Proteasome-activating nucleotidase OS=Sulfolobus tokodaii GN=pan PE=3 SV=2) HSP 1 Score: 73.1738 bits (178), Expect = 1.724e-12 Identity = 36/103 (34.95%), Postives = 57/103 (55.34%), Query Frame = 1 Query: 370 DAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPR 678 D K ++ +V + + ++ G V + + I LP + D V V EKP+V Y+D+GG EQI ++REV+ELP+ +PE F ++GIDPP+ Sbjct: 67 DGKVIVRSSSGPNLIVNVSSNIDIKKLKPGSLVALTQRGSTIVEVLPEREDAYVKSFEVIEKPNVHYSDIGGLNEQINEIREVIELPLKNPELFKEIGIDPPK 169
BLAST of FC920672 vs. ExPASy Swiss-Prot
Match: PSMR_AERPE (Proteasome-activating nucleotidase OS=Aeropyrum pernix GN=pan PE=3 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.724e-12 Identity = 45/140 (32.14%), Postives = 69/140 (49.29%), Query Frame = 1 Query: 286 LVSDKQMMQEEQPLQVARCTKIISPNS---------EDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPR 678 L +K +Q+E TK++SP +D + V+ +V + V ++ G V ++ I LP + DP V M VEE+P V + DVGG +EQI ++ E V LP+ +P F +LGIDPP+ Sbjct: 35 LTKEKISLQKELEYYKNEITKLLSPPYIEAVVLEVIDDNRVVVKSSTGPNLIVNVAAGVDARSLKPGAIVALNNRGSTIVDVLPGRYDPLVKAMEVEERPKVFFKDVGGLEEQIREIYEAVVLPIKNPHLFRELGIDPPK 174
BLAST of FC920672 vs. ExPASy Swiss-Prot
Match: PRS6A_SCHPO (26S protease regulatory subunit 6A OS=Schizosaccharomyces pombe GN=tbp1 PE=2 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 2.252e-12 Identity = 34/82 (41.46%), Postives = 51/82 (62.20%), Query Frame = 1 Query: 433 VSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPR 678 V P ++ G +GV+++ Y I LP + D V M V+EKP Y+D+GG +QIE++ E + LPM +KF KLG+ PP+ Sbjct: 139 VEPEELHPGDLIGVNKDSYLIIDKLPSEYDSRVKAMEVDEKPTERYSDIGGLSKQIEELFEAIVLPMQQADKFRKLGVKPPK 220
BLAST of FC920672 vs. ExPASy Swiss-Prot
Match: PSMR_METPE (Proteasome-activating nucleotidase OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=pan PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 2.941e-12 Identity = 38/119 (31.93%), Postives = 64/119 (53.78%), Query Frame = 1 Query: 322 PLQVARCTKIISPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPR 678 PL + T +I N + ++ +F+VG+ ++ +I+ G R +++ I LP D + M V E P Y ++GG ++QI ++RE VELP+ PE F K+GI+PP+ Sbjct: 74 PLVIGTVTDLIDEN----RVIVRSSAGPRFLVGISQSLNIEEIKPGARCTLNQQSLAIVEILPTNYDAQIYGMEVIEAPSERYEEIGGLEKQINEIREAVELPLKKPEVFRKMGIEPPK 188
BLAST of FC920672 vs. ExPASy Swiss-Prot
Match: PRS6A_RAT (26S protease regulatory subunit 6A OS=Rattus norvegicus GN=Psmc3 PE=2 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 2.941e-12 Identity = 39/91 (42.86%), Postives = 56/91 (61.54%), Query Frame = 1 Query: 412 VVGLGD--KVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPR 678 V+GL D K+ P D+ VGV+++ Y I LP + D V M V+E+P Y+D+GG +QI+++ E + LPM H EKF LGI PP+ Sbjct: 136 VIGLVDAEKLKPGDL-----VGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPK 221
BLAST of FC920672 vs. ExPASy Swiss-Prot
Match: PRS6A_HUMAN (26S protease regulatory subunit 6A OS=Homo sapiens GN=PSMC3 PE=1 SV=3) HSP 1 Score: 72.4034 bits (176), Expect = 2.941e-12 Identity = 39/91 (42.86%), Postives = 56/91 (61.54%), Query Frame = 1 Query: 412 VVGLGD--KVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPR 678 V+GL D K+ P D+ VGV+++ Y I LP + D V M V+E+P Y+D+GG +QI+++ E + LPM H EKF LGI PP+ Sbjct: 136 VIGLVDAEKLKPGDL-----VGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPK 221 The following BLAST results are available for this feature:
BLAST of FC920672 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 109
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC920672 ID=FC920672; Name=FC920672; organism=Citrus clementina; type=EST; length=748bpback to top |