FC920672
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC920672 vs. ExPASy Swiss-Prot
Match: PR6AB_XENLA (26S protease regulatory subunit 6A-B OS=Xenopus laevis GN=psmc3-B PE=2 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 2.941e-12 Identity = 39/91 (42.86%), Postives = 56/91 (61.54%), Query Frame = 1 Query: 412 VVGLGD--KVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPR 678 V+GL D K+ P D+ VGV+++ Y I LP + D V M V+E+P Y+D+GG +QI+++ E + LPM H EKF LGI PP+ Sbjct: 101 VIGLVDAEKLKPGDL-----VGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPK 186
BLAST of FC920672 vs. ExPASy Swiss-Prot
Match: PR6AA_XENLA (26S protease regulatory subunit 6A-A OS=Xenopus laevis GN=psmc3-A PE=2 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 2.941e-12 Identity = 39/91 (42.86%), Postives = 56/91 (61.54%), Query Frame = 1 Query: 412 VVGLGD--KVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPR 678 V+GL D K+ P D+ VGV+++ Y I LP + D V M V+E+P Y+D+GG +QI+++ E + LPM H EKF LGI PP+ Sbjct: 120 VIGLVDAEKLKPGDL-----VGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPK 205
BLAST of FC920672 vs. ExPASy Swiss-Prot
Match: PSMR_METMJ (Proteasome-activating nucleotidase OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=pan PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 5.017e-12 Identity = 36/119 (30.25%), Postives = 65/119 (54.62%), Query Frame = 1 Query: 322 PLQVARCTKIISPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPR 678 PL + T +I ++++ ++ +F+V + P ++ G+R +++ I LP D + M + E P+ TY ++GG + QIE++RE VELP+ P+ F K+GI PP+ Sbjct: 74 PLVIGTVTDVI----DNSRVIVRSSAGPRFLVRTSQLIDPDLLKPGVRCTLNQQSLAIVDVLPTSYDAQIYGMELVESPEETYENIGGLEPQIEEIREAVELPLTKPQLFEKVGISPPK 188
BLAST of FC920672 vs. ExPASy Swiss-Prot
Match: PRS6A_MOUSE (26S protease regulatory subunit 6A OS=Mus musculus GN=Psmc3 PE=2 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 5.017e-12 Identity = 39/91 (42.86%), Postives = 55/91 (60.44%), Query Frame = 1 Query: 412 VVGLGD--KVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPR 678 V+GL D K+ P D+ VGV+++ Y I LP D V M V+E+P Y+D+GG +QI+++ E + LPM H EKF LGI PP+ Sbjct: 139 VIGLVDAEKLKPGDL-----VGVNKDSYLILETLPTDYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPK 224
BLAST of FC920672 vs. ExPASy Swiss-Prot
Match: PRS6B_CAEEL (Probable 26S protease regulatory subunit 6B OS=Caenorhabditis elegans GN=rpt-3 PE=2 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 6.553e-12 Identity = 31/77 (40.26%), Postives = 50/77 (64.94%), Query Frame = 1 Query: 448 IEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPR 678 ++ G V + + + LPP+ D S+ M+ +EKPD++Y D+GG Q +++RE VELP+ H E + ++GIDPPR Sbjct: 120 LKPGCSVALHKYSNALVDVLPPEADSSIQMLRPDEKPDISYGDIGGLDMQKQEVREAVELPLTHGELYQQIGIDPPR 196
BLAST of FC920672 vs. ExPASy Swiss-Prot
Match: PSMR_METAC (Proteasome-activating nucleotidase OS=Methanosarcina acetivorans GN=pan PE=3 SV=2) HSP 1 Score: 70.8626 bits (172), Expect = 8.558e-12 Identity = 41/179 (22.91%), Postives = 88/179 (49.16%), Query Frame = 1 Query: 160 LGPYSTSIKKAEKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEE------QPLQVARCTKIISPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPR 678 LG + S++ ++++ + + C ES+ + + + +Q E PL + +I ++ + ++ +F+V + + + G +V ++++ I +P +P V M V E +V Y+ +GG EQI++++E VELP++ PE+F ++GI+PP+ Sbjct: 20 LGESTESVQDRVRQLESRNSFLEEQCSQIESEKRYLENQKIKYEREIRKLQSELDRMKTSPLIIGTVIDVI----KNDRIIVRSSNGPQFLVNVSQYIDEKKLLPGAKVALNQHTLAIAEVIPSTEEPFVAAMEVIESIEVDYDQIGGLDEQIQELQEAVELPLIEPERFARIGIEPPK 194
BLAST of FC920672 vs. ExPASy Swiss-Prot
Match: PRS6B_MANSE (26S protease regulatory subunit 6B OS=Manduca sexta PE=2 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.118e-11 Identity = 29/58 (50.00%), Postives = 44/58 (75.86%), Query Frame = 1 Query: 505 LPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPR 678 LPP+ D S++M+ +EKPDV Y+D+GG Q +++RE VELP+ H E + ++GI+PPR Sbjct: 140 LPPEADSSISMLQADEKPDVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPR 197
BLAST of FC920672 vs. ExPASy Swiss-Prot
Match: PSMR_METMA (Proteasome-activating nucleotidase OS=Methanosarcina mazei GN=pan PE=3 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.907e-11 Identity = 41/179 (22.91%), Postives = 87/179 (48.60%), Query Frame = 1 Query: 160 LGPYSTSIKKAEKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEE------QPLQVARCTKIISPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPR 678 LG + S++ ++++ + + C ES+ + + + +Q E PL + +I ++ + ++ +F+V + + + G +V ++++ I +P +P V M V E +V Y+ +GG EQI++++E VELP+ PE+F ++GI+PP+ Sbjct: 20 LGETTESVQDRVRQLESRNSFLEEQCSQIESEKRYLENQKIKYEREIRKLQSELDRMKTSPLIIGTVIDVI----KNDRIIVRSSNGPQFLVNVSQYIDEKKLLPGAKVALNQHTLAIAEVIPSTEEPFVAAMEVIESVEVDYDQIGGLDEQIQELQEAVELPLTSPERFARIGIEPPK 194
BLAST of FC920672 vs. ExPASy Swiss-Prot
Match: PRS6B_YEAST (26S protease regulatory subunit 6B homolog OS=Saccharomyces cerevisiae GN=RPT3 PE=1 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.907e-11 Identity = 33/77 (42.86%), Postives = 50/77 (64.94%), Query Frame = 1 Query: 448 IEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPR 678 ++ M V + R+ + LPP D S+++M EKPDVTY DVGG Q +++RE VELP++ + + ++GIDPPR Sbjct: 131 LKPSMSVALHRHSNALVDILPPDSDSSISVMGENEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPR 207
BLAST of FC920672 vs. ExPASy Swiss-Prot
Match: PRS4_CAEEL (Probable 26S protease regulatory subunit 4 OS=Caenorhabditis elegans GN=rpt-2 PE=2 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.907e-11 Identity = 37/119 (31.09%), Postives = 65/119 (54.62%), Query Frame = 1 Query: 322 PLQVARCTKIISPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPR 678 P+ V +II +D +++ ++ V + V +E G V ++ + + L DP V++M +E+ P TY DVGG +QI++++E VELP+ HPE + ++GI PP+ Sbjct: 109 PMAVGSLEEII----DDQHAIVSTNVGSEHYVNIMSFVDKEQLEPGCSVLLNHKNHAVIGVLSDDTDPMVSVMKLEKAPQETYADVGGLDQQIQEIKEAVELPLTHPEYYEEMGIRPPK 223 The following BLAST results are available for this feature:
BLAST of FC920672 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 109
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Sequences
The
following sequences are available for this feature:
EST sequence >FC920672 ID=FC920672; Name=FC920672; organism=Citrus clementina; type=EST; length=748bpback to top |