FC920678
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC920678 vs. ExPASy Swiss-Prot
Match: PSB4_ENCCU (Probable proteasome subunit beta type-4 OS=Encephalitozoon cuniculi GN=PRE4 PE=1 SV=1) HSP 1 Score: 123.635 bits (309), Expect = 9.269e-28 Identity = 72/190 (37.89%), Postives = 107/190 (56.32%), Query Frame = 2 Query: 146 YVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVK----------NGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDE---WHENLSYEDGVKLLEKCMRVLLYRDRSA 676 +VTGT+VV+ +Y+DGI+M AD GSYG + V+RI +G +LLG SGEISD Q L++ L L DN + PK H + R++Y+ R+K PL S+ +GG+ +K LG V+ +G + V TG G +L P LR+ E ++ E+ + L+E+ MR+L YRD +A Sbjct: 13 FVTGTTVVSFRYRDGIIMGADTRGSYGRLAKLSGVQRIFKVGDQTLLGMSGEISDMQYLVKTLTILTQEDN-----RRIDPKGYHKMIQRILYSARSKISPLNLSVCVGGLNAASDGDRRTHTREKMLGCVNHLGNFYFSDVVCTGIGGYLVLPFLRNRVEGREEEIAREEAIGLVEEAMRILCYRDCNA 197
BLAST of FC920678 vs. ExPASy Swiss-Prot
Match: PSB4_PIG (Proteasome subunit beta type-4 (Fragment) OS=Sus scrofa GN=PSMB4 PE=2 SV=1) HSP 1 Score: 121.709 bits (304), Expect = 3.522e-27 Identity = 55/113 (48.67%), Postives = 83/113 (73.45%), Query Frame = 2 Query: 122 PIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNS 460 PI RTQ P VTGTSV+ +K++ G+++AADM GSYGS R++++ RI + ++LGASG+ +DFQ L + L ++++ + + DG+S PK +HS+LTR MYNRR K +PLW + Sbjct: 42 PITRTQNPMVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVLGQMVIDEELLGDGHSYSPKAIHSWLTRAMYNRRFKMNPLWTT 154
BLAST of FC920678 vs. ExPASy Swiss-Prot
Match: PSMB_PYRFU (Proteasome subunit beta OS=Pyrococcus furiosus GN=psmB PE=3 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 3.093e-15 Identity = 56/172 (32.56%), Postives = 88/172 (51.16%), Query Frame = 2 Query: 155 GTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLD-ELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRD 667 GT+ V L K+G+++AAD S G+ I K+V +I I +H + +G++ D L+R L E LY + G + K L + L ++ +K+ P ++GG + L V M+G ED++ A G G A IL E+ E +S DG+KL K + V + RD Sbjct: 10 GTTTVGLVCKEGVVLAADTRASLGNIIYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLLKAEANLYKS--TVGKEMSVKALATLLANIL--NGSKYFPYLGWFLVGGYDEKPR-LFSVDMVGGITEDNYAAAGSGMEFAYSILDSEYREEMSVNDGIKLAVKAINVAIKRD 176
BLAST of FC920678 vs. ExPASy Swiss-Prot
Match: PSMB_PYRHO (Proteasome subunit beta OS=Pyrococcus horikoshii GN=psmB PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.535e-14 Identity = 55/172 (31.98%), Postives = 86/172 (50.00%), Query Frame = 2 Query: 155 GTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNL-DELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRD 667 GT+ V + KDG+++AAD S G+ I ++V +I I +H + +G++ D L+R L E LY + G + K L + L +M K+ P ++GG K L V M+G ED + G G A IL E+ +NL+ E+G+KL K + + RD Sbjct: 10 GTTTVGIVCKDGVVLAADRRASLGNIIYARNVTKIHKIDEHLAIAGAGDVGDILNLVRLLRAEAKLYYS--QSGKRMSVKALATLLANIMNGA--KYFPYLAWFLVGGYDEKPK-LYSVDMVGGITEDKYATAGSGMEFAYSILDSEYKDNLTLEEGIKLAVKAINTAIKRD 176
BLAST of FC920678 vs. ExPASy Swiss-Prot
Match: PSMB_PYRAB (Proteasome subunit beta OS=Pyrococcus abyssi GN=psmB PE=3 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.588e-11 Identity = 50/172 (29.07%), Postives = 83/172 (48.26%), Query Frame = 2 Query: 155 GTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNL-DELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRD 667 GT+ V + DG+++AAD S G+ + K+V +I I +H + +G++ D L+R L E LY G + K L + L ++ R W ++GG + L V M+G ED +VA G G A +L E+ E+L +G+K+ + + + RD Sbjct: 10 GTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLLRAEAKLY--YAQSGKRMSVKALATLLANMLNGARMLPYLAW--FLVGGFDEKPR-LYSVDMMGGITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRD 176
BLAST of FC920678 vs. ExPASy Swiss-Prot
Match: PSMB_METTE (Proteasome subunit beta OS=Methanosarcina thermophila GN=psmB PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 3.539e-11 Identity = 50/181 (27.62%), Postives = 94/181 (51.93%), Query Frame = 2 Query: 146 YVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLD-ELILYDNMWDDGNSLGPKELHSYLTRVMYN--RRNKFDPLWNSLVLGGV-KNGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSA 676 Y+ GT+ V + DGI++A++ + G I K+ +++ I + +G + D Q+L+R + E LY D+ ++ +T +M N RN++ P+ L++GGV KNG + +M G E ATG G+ +A +L D++ EN++ ++G+ L + + RD ++ Sbjct: 6 YLKGTTTVGVVCTDGIVLASEQRATMGHFIASKTAKKVYQIDDLVGMTTAGSVGDAQQLVRLVSVESQLYKMRRDESMTI------KGITTLMSNFLSRNRYYPMMVQLLIGGVDKNGPGIYSLDAMGGSIEETRISATGSGSPMAYGVLEDQYRENMTVKEGLDLAIRAIHNATKRDSAS 180 The following BLAST results are available for this feature:
BLAST of FC920678 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 16
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Sequences
The
following sequences are available for this feature:
EST sequence >FC920678 ID=FC920678; Name=FC920678; organism=Citrus clementina; type=EST; length=677bpback to top |