FC920679

Overview
NameFC920679
Unique NameFC920679
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length686
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920679 vs. ExPASy Swiss-Prot
Match: RL5_OIKDI (60S ribosomal protein L5 OS=Oikopleura dioica GN=RPL5 PE=3 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 5.528e-60
Identity = 119/207 (57.49%), Postives = 144/207 (69.57%), Query Frame = 2
Query:   65 KSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGED-YSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMED 682
            K+KAYFKRYQ K+KRRREGKTDY AR RL  QDKNKYNTPKYR VVR TNKDI AQI  A + GD+++ SAYAHELPRYG+ VGLTNY+AAY TGLL+ RRVL+   +D+ YEG +E  G++ Y       +  FR  LD GL +T+TG R+F            IPHS KRF GF+ D K L+AE H+ +I+ GHV  YM  L E+
Sbjct:   18 KNKAYFKRYQPKFKRRREGKTDYFARKRLCVQDKNKYNTPKYRLVVRVTNKDIIAQIAYARLQGDVIVTSAYAHELPRYGVSVGLTNYSAAYATGLLIGRRVLQKFGLDSMYEGQIEVDGDEFYEEADAAEKASFRCYLDTGLARTSTGARIFGVLKGCADAGIDIPHSPKRFPGFA-DGK-LNAEAHKDHIFGGHVGDYMEKLEEE 222          
BLAST of FC920679 vs. ExPASy Swiss-Prot
Match: RL5_DICDI (60S ribosomal protein L5 OS=Dictyostelium discoideum GN=rpl5 PE=1 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 5.528e-60
Identity = 115/212 (54.25%), Postives = 154/212 (72.64%), Query Frame = 2
Query:   56 KAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENR-RPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLM-EDE 685
            K  K+KAY+ RYQV+++RRREGKTDY+ R RLI QDKNKYN+PKYR V R TN D+ AQ++ + I GD VL +AYAHELPR+G++VGLTNYA+ Y TGLLLARR+L  L++   Y+G  +  G+ + V+P +++ RPF+A LDVGL +T+TG +VF            +PH E RFAG++ +SK+L+AE  R YI+  HVA+YM  L  EDE
Sbjct:    5 KVVKTKAYYSRYQVQFRRRREGKTDYQQRHRLITQDKNKYNSPKYRLVARITNTDVIAQVVYSKIVGDFVLCAAYAHELPRFGVKVGLTNYASCYATGLLLARRLLAKLKLADLYKGAEKVDGKVFLVKPVDDKPRPFKANLDVGLARTSTGAKVFAVLKGAVDGGIYVPHGETRFAGYNAESKKLNAETLRGYIFGKHVASYMTLLQTEDE 216          
BLAST of FC920679 vs. ExPASy Swiss-Prot
Match: RL5_YEAST (60S ribosomal protein L5 OS=Saccharomyces cerevisiae GN=RPL5 PE=1 SV=3)

HSP 1 Score: 228.024 bits (580), Expect = 3.583e-59
Identity = 115/211 (54.50%), Postives = 146/211 (69.19%), Query Frame = 2
Query:   56 KAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTEN-RRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDE 685
            K  KS AY  R+Q  ++RRREGKTDY  R RL+ Q K KYNTPKYR VVRFTNKDI  QIIS++I GD+VLA+AY+HELPRYG+  GLTN+AAAY TGLL+ARR L+ L +D  Y+G  E  GE    E  E+  RPF+  LD+GL +TTTG RVF            +PHSE RF G+  +++++D E+ R YI+ GHV+ YM  L +D+
Sbjct:    5 KDAKSSAYSSRFQTPFRRRREGKTDYYQRKRLVTQHKAKYNTPKYRLVVRFTNKDIICQIISSTITGDVVLAAAYSHELPRYGITHGLTNWAAAYATGLLIARRTLQRLGLDETYKGVEEVEGEYELTEAVEDGPRPFKVFLDIGLQRTTTGARVFGALKGASDGGLYVPHSENRFPGWDFETEEIDPELLRSYIFGGHVSQYMEELADDD 215          
BLAST of FC920679 vs. ExPASy Swiss-Prot
Match: RL5B_SCHPO (60S ribosomal protein L5-B OS=Schizosaccharomyces pombe GN=rpl5b PE=2 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 6.758e-58
Identity = 116/211 (54.98%), Postives = 144/211 (68.25%), Query Frame = 2
Query:   56 KAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTEN-RRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDE 685
            KA KS  YF RYQ KY+RRREGKTDY AR RLI Q KNKYN PKYR VVRF+N+ +T QI+S+ + GD VLA A++ ELPRYG++ GL N+ AAY TGLL+ARR L  + +  +YEG  E  GE    E  E+  RPF+  LDVGL +T+TG+RVF            IPHS  RF GF  ++++LD E  RKYIY GHVA YM  L++D+
Sbjct:    5 KAVKSSPYFSRYQTKYRRRREGKTDYYARKRLIAQAKNKYNAPKYRLVVRFSNRFVTCQIVSSRVNGDYVLAHAHSSELPRYGIKWGLANWTAAYATGLLVARRALAKVGLADKYEGVTEPEGEFELTEAIEDGPRPFKVFLDVGLKRTSTGSRVFGAMKGASDGGLFIPHSPNRFPGFDIETEELDDETLRKYIYGGHVAEYMEMLIDDD 215          
BLAST of FC920679 vs. ExPASy Swiss-Prot
Match: RL5A_SCHPO (60S ribosomal protein L5-A OS=Schizosaccharomyces pombe GN=rpl5a PE=1 SV=2)

HSP 1 Score: 223.787 bits (569), Expect = 6.758e-58
Identity = 116/211 (54.98%), Postives = 144/211 (68.25%), Query Frame = 2
Query:   56 KAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTEN-RRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDE 685
            KA KS  YF RYQ KY+RRREGKTDY AR RLI Q KNKYN PKYR VVRF+N+ +T QI+S+ + GD VLA A++ ELPRYG++ GL N+ AAY TGLL+ARR L  + +  +YEG  E  GE    E  E+  RPF+  LDVGL +T+TG+RVF            IPHS  RF GF  ++++LD E  RKYIY GHVA YM  L++D+
Sbjct:    5 KAVKSSPYFSRYQTKYRRRREGKTDYYARKRLIAQAKNKYNAPKYRLVVRFSNRFVTCQIVSSRVNGDYVLAHAHSSELPRYGIKWGLANWTAAYATGLLVARRALAKVGLADKYEGVTEPEGEFELTEAIEDGPRPFKVFLDVGLKRTSTGSRVFGAMKGASDGGLFIPHSPNRFPGFDIETEELDDETLRKYIYGGHVAEYMEMLIDDD 215          
BLAST of FC920679 vs. ExPASy Swiss-Prot
Match: RL5_PIG (60S ribosomal protein L5 (Fragment) OS=Sus scrofa GN=RPL5 PE=2 SV=3)

HSP 1 Score: 172.555 bits (436), Expect = 1.787e-42
Identity = 83/120 (69.17%), Postives = 97/120 (80.83%), Query Frame = 2
Query:   56 KAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVE 415
            K  K+KAYFKRYQVK++RRREGKTDY AR RL+ QDKNKYNTPKYR +VR TN+DI  QI  A I GD+++ +AYAHELP+YG++VGLTNYAAAYCTGLLLARR+L    M   Y G VE
Sbjct:    5 KVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDIICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMXKIYGGQVE 124          
BLAST of FC920679 vs. ExPASy Swiss-Prot
Match: RL18_METS3 (50S ribosomal protein L18P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.069e-18
Identity = 67/199 (33.67%), Postives = 93/199 (46.73%), Query Frame = 2
Query:   89 YQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDE 685
            Y+V ++RRREGKTDY AR++L++ DK+       R VVR +N   T Q+I  +  GDI LASA + +L  YG   G +N +A Y TG L A+R L              A G D             A+LD+GL     G++VF            IP+ E        D  +++ E         HVA Y  +L +DE
Sbjct:    7 YKVPFRRRREGKTDYAARMKLVDYDKS-------RLVVRLSNAHATVQVIDYAPEGDITLASAVSKQLANYGYLGGASNTSAVYLTGYLCAKRAL--------------AKGVD------------SAILDIGLKSAIKGSKVFAALKGAVDAGLDIPYGE----AVLPDESRINGE---------HVANYAESLDDDE 159          
BLAST of FC920679 vs. ExPASy Swiss-Prot
Match: RL18_METHJ (50S ribosomal protein L18P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.598e-17
Identity = 63/163 (38.65%), Postives = 81/163 (49.69%), Query Frame = 2
Query:   86 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEK 574
            RY V ++RRREG+T+Y AR RL+   K        R VVR TN+ I  QII+A + GD    +A + EL ++G E  L N  AAY TG+LLA R LK     A  EG                     A+LD+GL + T G RVF            IPH+E+
Sbjct:    6 RYFVAFRRRREGRTNYHARTRLVVATKP-------RMVVRKTNRHIICQIITAHMEGDRTHVAANSSELRKFGYEGSLNNTPAAYLTGMLLAVRALK-----AGQEG---------------------AILDIGLHRATPGARVFAALKGAVEAGFDIPHNEE 135          
BLAST of FC920679 vs. ExPASy Swiss-Prot
Match: RL18_METTH (50S ribosomal protein L18P OS=Methanobacterium thermoautotrophicum GN=rpl18p PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.431e-17
Identity = 66/204 (32.35%), Postives = 93/204 (45.59%), Query Frame = 2
Query:   74 AYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDE 685
            A+  RY++ ++RRREGKTDYRAR +++        T K R VVR T   + AQII+  + GD  L SA++ +L + G   G +N AAAY TG L  +R LK        EG  E                  A+LD+GL     G++VF            +PH E        D  ++  E         H+  Y  +L E+E
Sbjct:    2 AHGPRYKLAFRRRREGKTDYRARYKMVE-------TGKSRLVVRITTYHVIAQIINVGMNGDETLVSAHSKQLQKMGWLGGTSNTAAAYLTGYLCGKRALK--------EGIEE------------------AVLDIGLRPAIRGSKVFAALKGAVDAGLNVPHGE----SVLPDESRIRGE---------HIMEYAESLDEEE 159          
BLAST of FC920679 vs. ExPASy Swiss-Prot
Match: RL18_METB6 (50S ribosomal protein L18P OS=Methanoregula boonei (strain 6A8) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.176e-15
Identity = 57/162 (35.19%), Postives = 75/162 (46.30%), Query Frame = 2
Query:   86 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSE 571
            RY V ++RRREG+TDY  R +L+  D         R VVR TN+ I  Q+++A + GD  L SA + EL +YG      N  AAY TGLL A +  K               G+D             A+LD+GL + T G RVF            IP+ E
Sbjct:    6 RYLVAFRRRREGRTDYYQRTKLVVADAP-------RMVVRRTNRHIIVQLVTAEMEGDKTLVSANSAELEKYGYTGATANTPAAYLTGLLFAAKAKK--------------AGQD------------SAILDIGLNRATPGARVFAALKGAVDGGLEIPYGE 134          
The following BLAST results are available for this feature:
BLAST of FC920679 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
RL5_OIKDI5.528e-6057.4960S ribosomal protein L5 OS=Oikopleura dioica GN=R... [more]
RL5_DICDI5.528e-6054.2560S ribosomal protein L5 OS=Dictyostelium discoide... [more]
RL5_YEAST3.583e-5954.5060S ribosomal protein L5 OS=Saccharomyces cerevisi... [more]
RL5B_SCHPO6.758e-5854.9860S ribosomal protein L5-B OS=Schizosaccharomyces ... [more]
RL5A_SCHPO6.758e-5854.9860S ribosomal protein L5-A OS=Schizosaccharomyces ... [more]
RL5_PIG1.787e-4269.1760S ribosomal protein L5 (Fragment) OS=Sus scrofa ... [more]
RL18_METS33.069e-1833.6750S ribosomal protein L18P OS=Methanobrevibacter s... [more]
RL18_METHJ2.598e-1738.6550S ribosomal protein L18P OS=Methanospirillum hun... [more]
RL18_METTH4.431e-1732.3550S ribosomal protein L18P OS=Methanobacterium the... [more]
RL18_METB63.176e-1535.1950S ribosomal protein L18P OS=Methanoregula boonei... [more]

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Properties
Property NameValue
Genbank descriptionC32011F05EF RVDevelop1 Citrus clementina cDNA clone C32011F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920679 ID=FC920679; Name=FC920679; organism=Citrus clementina; type=EST; length=686bp
AAACTTCTCGAACTCTGCTGCTTCTACACTTTGAGCTTCAGCAATGGCCT
TTGCCAAAGCTCAAAAGTCAAAAGCTTACTTTAAGCGATATCAAGTTAAG
TACAAGAGAAGGCGAGAGGGAAAGACTGACTATCGGGCTAGGATTCGCCT
GATCAACCAAGATAAAAACAAGTACAACACGCCAAAGTATCGGTTTGTTG
TGCGATTCACCAACAAAGATATCACTGCACAAATTATATCTGCCAGCATA
GCCGGGGATATAGTCCTTGCATCTGCTTATGCCCATGAGCTTCCCCGTTA
TGGTCTTGAGGTGGGCCTCACTAATTATGCAGCAGCTTATTGCACTGGAC
TCCTCTTGGCCCGCCGAGTCCTGAAAATGCTTGAGATGGATGCTGAGTAT
GAGGGGCACGTTGAGGCAACAGGAGAGGACTATTCAGTTGAGCCAACTGA
GAACAGGAGGCCTTTCCGTGCCCTGCTTGATGTTGGTCTTGTGAAAACAA
CTACTGGTAACCGTGTCTTTGGCGCTCTTAAGGGTGCATTGGATGGTGGA
CTTGATATCCCTCACAGTGAGAAGAGATTTGCTGGATTCAGTAAGGATAG
TAAGCAACTTGACGCTGAAGTTCACCGTAAATACATCTATTGTGGTCATG
TCGCTGCCTACATGAGGACTTTGATGGAAGATGAGC
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