FC920729

Overview
NameFC920729
Unique NameFC920729
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length582
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12478 contig Ccv1_Contig12478:26..606. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920729 vs. ExPASy Swiss-Prot
Match: PLT3_ARATH (Probable polyol transporter 3 OS=Arabidopsis thaliana GN=PLT3 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.339e-15
Identity = 45/139 (32.37%), Postives = 80/139 (57.55%), Query Frame = 2
Query:  164 VAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIADITPKNLRGGFTTVHQLMICIGVSMTYL 580
            VA   S +FG   G  S AQ  I +DL ++  +  +   IL + A++G++ +GK +D IGRR T+  S ++ ++G V++ +      L +GR + G G+G    + PVY A+I+  + RG  T++ +L I +G+ + Y+
Sbjct:   28 VASIISIIFGYDTGVMSGAQIFIRDDLKINDTQIEVLAGILNLCALVGSLTAGKTSDVIGRRYTIALSAVIFLVGSVLMGYGPNYPVLMVGRCIAGVGVGFALMIAPVYSAEISSASHRGFLTSLPELCISLGILLGYV 166          
BLAST of FC920729 vs. ExPASy Swiss-Prot
Match: GTR1_DROME (Glucose transporter type 1 OS=Drosophila melanogaster GN=Glut1 PE=2 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 6.644e-15
Identity = 52/157 (33.12%), Postives = 84/157 (53.50%), Query Frame = 2
Query:  155 STFVAVCGSYVFGSAIGYSSPAQSGITNDL--------GLSVAE------YSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAW---WLDLGRLLVGYGMGLLSYVVPVYIADITPKNLRGGFTTVHQLMICIGVSMT 574
            S F AV G   FG   G  +  +  I N +        G  ++E      YS+  SI  IG M+G    G +A+  GR+G +  ++++ I G  ++ F+K +     L LGR ++G   GL + +VP+YI++I P NLRGG  TV+QL + +G+ ++
Sbjct:  261 SIFSAVLGMLQFGYNTGVINAPEKNIENFMKDVYKDRYGEDISEEFIQQLYSVAVSIFAIGGMLGGFSGGWMANRFGRKGGLLLNNVLGIAGACLMGFTKVSHSYEMLFLGRFIIGVNCGLNTSLVPMYISEIAPLNLRGGLGTVNQLAVTVGLLLS 417          
BLAST of FC920729 vs. ExPASy Swiss-Prot
Match: CSBC_BACSU (Probable metabolite transport protein csbC OS=Bacillus subtilis GN=csbC PE=1 SV=3)

HSP 1 Score: 80.4925 bits (197), Expect = 6.644e-15
Identity = 45/140 (32.14%), Postives = 75/140 (53.57%), Query Frame = 2
Query:  161 FVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIADITPKNLRGGFTTVHQLMICIGVSMTYL 580
            F    G  ++G   G  S A   I ND+ L+     L  S+L +GA+ G+ +SG  +D  GRR  +    I+ IIG +   FS+    L   R+++G  +G  + +VPVY++++ P  +RG   T++ LMI  G+ + Y+
Sbjct:   12 FFGALGGLLYGYDTGVISGALLFINNDIPLTTLTEGLVVSMLLLGAIFGSALSGTCSDRWGRRKVVFVLSIIFIIGALACAFSQTIGMLIASRVILGLAVGGSTALVPVYLSEMAPTKIRGTLGTMNNLMIVTGILLAYI 151          
BLAST of FC920729 vs. ExPASy Swiss-Prot
Match: INT4_ARATH (Inositol transporter 4 OS=Arabidopsis thaliana GN=INT4 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.525e-14
Identity = 44/138 (31.88%), Postives = 78/138 (56.52%), Query Frame = 2
Query:  176 GSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTI---GAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIADITPKNLRGGFTTVHQLMICIGVSMTYL 580
            G  +FG   G  S A   I  D      +  L  +I+++   GA++GA + G I D  GRR ++  +D++ +IG +++ F+ A W + +GR+ VG+G+G+ S   P+YI++ +P  +RG   + + L+I  G   +YL
Sbjct:   37 GGLLFGYDTGVISGALLFIKEDFDEVDKKTWLQSTIVSMAVAGAIVGAAVGGWINDKFGRRMSILIADVLFLIGAIVMAFAPAPWVIIVGRIFVGFGVGMASMTSPLYISEASPARIRGALVSTNGLLITGGQFFSYL 174          
BLAST of FC920729 vs. ExPASy Swiss-Prot
Match: INT3_ARATH (Probable inositol transporter 3 OS=Arabidopsis thaliana GN=INT3 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.525e-14
Identity = 36/101 (35.64%), Postives = 66/101 (65.35%), Query Frame = 2
Query:  278 SILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIADITPKNLRGGFTTVHQLMICIGVSMTYL 580
            S+   GA++GA + G   D  GRR ++  +D++ ++G +++V + A W + LGRLLVG+G+G+ S   P+YI++++P  +RG   + + L+I  G  ++YL
Sbjct:   73 SMTVAGAIVGAAIGGWYNDKFGRRMSVLIADVLFLLGALVMVIAHAPWVIILGRLLVGFGVGMASMTSPLYISEMSPARIRGALVSTNGLLITGGQFLSYL 173          
BLAST of FC920729 vs. ExPASy Swiss-Prot
Match: GTR3_RAT (Solute carrier family 2, facilitated glucose transporter member 3 OS=Rattus norvegicus GN=Slc2a3 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.297e-14
Identity = 49/157 (31.21%), Postives = 85/157 (54.14%), Query Frame = 2
Query:  146 VVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAE--------------YSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLD---LGRLLVGYGMGLLSYVVPVYIADITPKNLRGGFTTVHQLMICIGV 565
            +V +  VA  GS+ FG   G  +  ++ I + L  ++ E              +SL  +I ++G MIG+   G   +  GRR +M   +++ I+G  ++ F+K A  ++   LGRL++G   GL +  VP+YI +++P  LRG F T++QL I +G+
Sbjct:   10 LVFAVTVATIGSFQFGYNTGVINAPETIIKDFLNYTLEERLEDLPREGLLTTLWSLCVAIFSVGGMIGSFSVGLFVNRFGRRNSMLLVNLIAILGGCLMGFAKIAESVEMLILGRLIIGIFCGLCTGFVPMYIGEVSPTALRGAFGTLNQLGIVVGI 166          
BLAST of FC920729 vs. ExPASy Swiss-Prot
Match: GTR3_MOUSE (Solute carrier family 2, facilitated glucose transporter member 3 OS=Mus musculus GN=Slc2a3 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.624e-14
Identity = 51/157 (32.48%), Postives = 84/157 (53.50%), Query Frame = 2
Query:  146 VVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDL--------------GLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLD---LGRLLVGYGMGLLSYVVPVYIADITPKNLRGGFTTVHQLMICIGV 565
            +V +  VA  GS+ FG   G  +  ++ + + L              GL  A +SL  +I ++G MIG+   G   +  GRR +M   +++ II   ++ F+K A  ++   LGRLL+G   GL +  VP+YI +++P  LRG F T++QL I +G+
Sbjct:   10 LVFAVTVATIGSFQFGYNTGVINAPETILKDFLNYTLEERLEDLPSEGLLTALWSLCVAIFSVGGMIGSFSVGLFVNRFGRRNSMLLVNLLAIIAGCLMGFAKIAESVEMLILGRLLIGIFCGLCTGFVPMYIGEVSPTALRGAFGTLNQLGIVVGI 166          
BLAST of FC920729 vs. ExPASy Swiss-Prot
Match: XYLT_LACBR (D-xylose-proton symporter OS=Lactobacillus brevis GN=xylT PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 9.593e-14
Identity = 41/140 (29.29%), Postives = 72/140 (51.43%), Query Frame = 2
Query:  161 FVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIADITPKNLRGGFTTVHQLMICIGVSMTYL 580
            F    G  +FG   G  S A   I   + L   +     S + +GA++GA + G  +D  GRR  +  S I+  +G +   FS   W L + R+++G  +G  S ++P Y+A++ P + RG  +++ QLM+  G+ + Y+
Sbjct:   11 FFGALGGLLFGYDTGVISGAILFIQKQMNLGSWQQGWVVSAVLLGAILGAAIIGPSSDRFGRRKLLLLSAIIFFVGALGSAFSPEFWTLIISRIILGMAVGAASALIPTYLAELAPSDKRGTVSSLFQLMVMTGILLAYI 150          
BLAST of FC920729 vs. ExPASy Swiss-Prot
Match: YWTG_BACSU (Putative metabolite transport protein ywtG OS=Bacillus subtilis GN=ywtG PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.253e-13
Identity = 39/140 (27.86%), Postives = 80/140 (57.14%), Query Frame = 2
Query:  161 FVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIADITPKNLRGGFTTVHQLMICIGVSMTYL 580
            F    G  ++G   G  S A   +  +LGL+     L  S L +GA++G+  +GK+ D  GR+  +  + ++  IG + +  +     + L R+++G  +G  + +VP+Y++++ PK+ RG  ++++QLMI +G+ ++Y+
Sbjct:   11 FFGALGGALYGYDTGVISGAILFMKKELGLNAFTEGLVVSSLLVGAILGSGAAGKLTDRFGRKKAIMAAALLFCIGGLGVALAPNTGVMVLFRIILGLAVGTSTTIVPLYLSELAPKHKRGALSSLNQLMITVGILLSYI 150          
BLAST of FC920729 vs. ExPASy Swiss-Prot
Match: GTR10_XENTR (Solute carrier family 2, facilitated glucose transporter member 10 OS=Xenopus tropicalis GN=slc2a10 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.253e-13
Identity = 38/144 (26.39%), Postives = 79/144 (54.86%), Query Frame = 2
Query:  146 VVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIADITPKNLRGGFTTVHQLMICIGVSMTY 577
            ++L+  V++ G  VFG  +G  S A   +     L+  E     S +  GA++ +++ G I D  GRR  +  S++V + G +I++ +   WWL +GR+ +G+ + + S    +Y+++I   + RG   ++++  I +G+ ++Y
Sbjct:    8 LILAATVSLLGGIVFGYELGIISGALLVLKTVYQLTCFEQEALVSAVLFGALLASLIGGIIIDRWGRRTAILASNLVVLAGSIILIATSTFWWLIVGRVTIGFAISISSMACCIYVSEIVRPHQRGMLVSLYETGITVGILISY 151          
The following BLAST results are available for this feature:
BLAST of FC920729 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
PLT3_ARATH1.339e-1532.37Probable polyol transporter 3 OS=Arabidopsis thali... [more]
GTR1_DROME6.644e-1533.12Glucose transporter type 1 OS=Drosophila melanogas... [more]
CSBC_BACSU6.644e-1532.14Probable metabolite transport protein csbC OS=Baci... [more]
INT4_ARATH2.525e-1431.88Inositol transporter 4 OS=Arabidopsis thaliana GN=... [more]
INT3_ARATH2.525e-1435.64Probable inositol transporter 3 OS=Arabidopsis tha... [more]
GTR3_RAT3.297e-1431.21Solute carrier family 2, facilitated glucose trans... [more]
GTR3_MOUSE5.624e-1432.48Solute carrier family 2, facilitated glucose trans... [more]
XYLT_LACBR9.593e-1429.29D-xylose-proton symporter OS=Lactobacillus brevis ... [more]
YWTG_BACSU1.253e-1327.86Putative metabolite transport protein ywtG OS=Baci... [more]
GTR10_XENTR1.253e-1326.39Solute carrier family 2, facilitated glucose trans... [more]

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Properties
Property NameValue
Genbank descriptionC32012C09EF RVDevelop1 Citrus clementina cDNA clone C32012C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920729 ID=FC920729; Name=FC920729; organism=Citrus clementina; type=EST; length=582bp
TGTGAAATTTTTGTGATCTCTGGCAAAGAAAGTGTTACCGGAAGAAGGGT
TATCGAGCTCTTTGCTTAAGGAGAAGTCTCAGGTACATGGTGCTGGCAGT
AGTGGCGGTGAGAGTGGAAGTGGAAGTGCTTCTGCCACAAGTGCTGTTGT
GCTCAGCACTTTCGTTGCTGTCTGTGGTTCCTATGTTTTTGGTTCTGCTA
TTGGGTATTCATCACCTGCTCAGTCTGGAATAACCAATGATCTTGGTCTT
TCTGTCGCGGAGTATTCACTTTTCGGTTCAATATTGACGATCGGAGCTAT
GATAGGTGCAATAATGAGTGGGAAAATAGCGGATTACATTGGCCGAAGAG
GTACAATGGGCTTCTCAGACATAGTTTGCATCATTGGATGGGTTATAATT
GTATTCTCGAAGGCTGCTTGGTGGCTAGATCTTGGAAGGCTGTTGGTGGG
ATATGGGATGGGTCTCCTTTCTTACGTGGTACCTGTGTATATAGCTGATA
TCACACCCAAAAATCTTCGAGGAGGATTTACAACAGTCCATCAGTTGATG
ATATGTATTGGCGTGTCAATGACATATCTCAT
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