FC920729

Overview
NameFC920729
Unique NameFC920729
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length582
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12478 contig Ccv1_Contig12478:26..606. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920729 vs. ExPASy Swiss-Prot
Match: GTR12_BOVIN (Solute carrier family 2, facilitated glucose transporter member 12 OS=Bos taurus GN=SLC2A12 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.385e-12
Identity = 44/144 (30.56%), Postives = 77/144 (53.47%), Query Frame = 2
Query:  149 VLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIADITPKNLRGGFTTVHQLMICIGVSMTYL 580
            +LS+  A    ++ G  +G  S A   I   L L+  E  +  S L IGA++ +++ G + D  GRR  +  S  +  +G ++++ S +   L  GR+ +G  + L S    VYIA+I P++ RG   ++++LMI IG+   Y+
Sbjct:   45 LLSSVTAAVSGFLVGYELGIISGALLQIRTLLVLTCHEQEMVVSSLLIGALLASLIGGVLIDRYGRRAAIILSSCLLGLGSLVLIISLSYTTLIGGRIAIGVFISLSSTATCVYIAEIAPQHRRGLLVSLNELMIVIGILFAYI 188          
BLAST of FC920729 vs. ExPASy Swiss-Prot
Match: ARAE_KLEOX (Arabinose-proton symporter OS=Klebsiella oxytoca GN=araE PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.385e-12
Identity = 39/141 (27.66%), Postives = 78/141 (55.32%), Query Frame = 2
Query:  158 TFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIADITPKNLRGGFTTVHQLMICIGVSMTYL 580
            +  A     +FG  IG  + A   IT+   LS        S + +GA IGA+ +G ++  +GR+ ++    ++ + G V   F+ +   L + R+++G  +G+ SY  P+Y++++  +N+RG   +++QLM+ +G+ M +L
Sbjct:   26 SIAAAVAGLLFGLDIGVIAGALPFITDHFVLSSRLQEWVVSSMMLGAAIGALFNGWLSFRLGRKYSLMVGAVLFVAGSVGSAFATSVEMLLVARIVLGVAVGIASYTAPLYLSEMASENVRGKMISMYQLMVTLGIVMAFL 166          
BLAST of FC920729 vs. ExPASy Swiss-Prot
Match: GTR5_RAT (Solute carrier family 2, facilitated glucose transporter member 5 OS=Rattus norvegicus GN=Slc2a5 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.809e-12
Identity = 40/109 (36.70%), Postives = 65/109 (59.63%), Query Frame = 2
Query:  263 YSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDL---GRLLVGYGMGLLSYVVPVYIADITPKNLRGGFTTVHQLMICIGVSMTYL 580
            +SL  S+   G  IG++M G + + +GR+G + F++I  I+  +++  SK A   ++    RLLVG   G+ S VVP+Y+ ++ PKNLRG    V QL I +G+ +  L
Sbjct:   70 WSLTVSMFPFGGFIGSLMVGFLVNNLGRKGALLFNNIFSILPAILMGCSKIAKSFEIIIASRLLVGICAGISSNVVPMYLGELAPKNLRGALGVVPQLFITVGILVAQL 178          
BLAST of FC920729 vs. ExPASy Swiss-Prot
Match: STP8_ARATH (Sugar transport protein 8 OS=Arabidopsis thaliana GN=STP8 PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 3.086e-12
Identity = 46/159 (28.93%), Postives = 74/159 (46.54%), Query Frame = 2
Query:  146 VVLSTFVAVCGSYVFGSAIGYSS--PAQSGITNDLGLSVAE-----------------YSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIADITPKNLRGGFTTVHQLMICIGV 565
            V +   +A  G  +FG  IG S    A      +   SV E                   LF S L + A++ +  +      +GRR TM  + I  +IG  +   +   + L +GR+L+G+G+G  +  VP+++++I P  LRGG   V QLM+ IG+
Sbjct:   22 VFICVIIAAVGGLIFGYDIGISGGVTAMDDFLKEFFPSVYERKKHAHENNYCKYDNQFLQLFTSSLYLAALVASFFASATCSKLGRRPTMQLASIFFLIGVGLAAGAVNIYMLIIGRILLGFGVGFGNQAVPLFLSEIAPARLRGGLNIVFQLMVTIGI 180          
BLAST of FC920729 vs. ExPASy Swiss-Prot
Match: PLT2_ARATH (Putative polyol transporter 2 OS=Arabidopsis thaliana GN=PLT2 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.086e-12
Identity = 40/134 (29.85%), Postives = 73/134 (54.48%), Query Frame = 2
Query:  179 SYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIADITPKNLRGGFTTVHQLMICIGVSMTYL 580
            S + G  IG  S A   I +DL LS  +  +   IL I ++IG+  +G+ +D+IGRR T+  +      G +++ F+    ++ +GR + G G+G    + PVY  ++ P + RG  ++  ++ I IG+ + Y+
Sbjct:   37 SIILGYDIGVMSGAAIFIKDDLKLSDVQLEILMGILNIYSLIGSGAAGRTSDWIGRRYTIVLAGFFFFCGALLMGFATNYPFIMVGRFVAGIGVGYAMMIAPVYTTEVAPASSRGFLSSFPEIFINIGILLGYV 170          
BLAST of FC920729 vs. ExPASy Swiss-Prot
Match: GTR5_BOVIN (Solute carrier family 2, facilitated glucose transporter member 5 OS=Bos taurus GN=SLC2A5 PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 3.086e-12
Identity = 49/159 (30.82%), Postives = 87/159 (54.72%), Query Frame = 2
Query:  146 VVLSTFVAVCGS-YVFG-SAIGYSSPAQ--------------SGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDL---GRLLVGYGMGLLSYVVPVYIADITPKNLRGGFTTVHQLMICIGV 565
            +VL+T +A  GS + +G +    +SP++                  N+  L++  +S+  S+   G  +G++M G + + +GR+GT+ F++I  I+  +++ FS+ A   ++    R+LVG   GL S VVP+Y+ ++ PKN RG    V QL I IG+
Sbjct:   17 IVLATLIAAFGSSFQYGYNVAAINSPSEFMKDFYNYTYYDRVGEYMNEFYLTLL-WSVTVSMFPFGGFLGSLMVGPLVNNLGRKGTLLFNNIFSIVPALLMGFSELAKSFEMIIVARVLVGICAGLSSNVVPMYLGELAPKNWRGALGVVPQLFITIGI 174          
BLAST of FC920729 vs. ExPASy Swiss-Prot
Match: GTR10_MOUSE (Solute carrier family 2, facilitated glucose transporter member 10 OS=Mus musculus GN=Slc2a10 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.086e-12
Identity = 40/144 (27.78%), Postives = 76/144 (52.78%), Query Frame = 2
Query:  146 VVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIADITPKNLRGGFTTVHQLMICIGVSMTY 577
            ++L   V++ G   FG  +   S A   +  + GLS  E  L    L +GA++ +++ G + D  GRR  +  S+ V + G +I+  + +  WL LGRL VG+ + L S    +Y++++     RG   +++++ I +G+  +Y
Sbjct:    8 LLLCASVSLLGGLTFGYELAVISGALLPLQLNFGLSCLEQELLVGSLLLGALLASLVGGFLIDCYGRRRAILGSNAVLLAGSLILGLASSLPWLLLGRLSVGFAISLSSMACCIYVSELVGPRQRGVLVSLYEVGITVGILFSY 151          
BLAST of FC920729 vs. ExPASy Swiss-Prot
Match: MYCT_RAT (Proton myo-inositol cotransporter OS=Rattus norvegicus GN=Slc2a13 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.030e-12
Identity = 41/129 (31.78%), Postives = 64/129 (49.61%), Query Frame = 2
Query:  176 GSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIADITPKNLRGGFTTVHQLMICIG 562
            G ++FG   G  S A   +   + L      L  S     A + A+  G +   +GRR  +  +  +C +G  ++  +     L  GRL+VG G+G+ S  VPVYIA+++P NLRG   T++ L I  G
Sbjct:   61 GGFLFGYDTGVVSGAMLLLRRQMRLGAMWQELLVSGAVGAAAVAALAGGALNGALGRRSAILLASALCTVGSAVLAAAANKETLLAGRLVVGLGIGIASMTVPVYIAEVSPPNLRGRLVTINTLFITGG 189          
BLAST of FC920729 vs. ExPASy Swiss-Prot
Match: MYCT_MOUSE (Proton myo-inositol cotransporter OS=Mus musculus GN=Slc2a13 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.030e-12
Identity = 41/129 (31.78%), Postives = 64/129 (49.61%), Query Frame = 2
Query:  176 GSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIADITPKNLRGGFTTVHQLMICIG 562
            G ++FG   G  S A   +   + L      L  S     A + A+  G +   +GRR  +  +  +C +G  ++  +     L  GRL+VG G+G+ S  VPVYIA+++P NLRG   T++ L I  G
Sbjct:   61 GGFLFGYDTGVVSGAMLLLRRQMRLGAMWQELLVSGAVGAAAVAALAGGALNGALGRRSAILLASALCTVGSAVLAAAANKETLLAGRLVVGLGIGIASMTVPVYIAEVSPPNLRGRLVTINTLFITGG 189          
BLAST of FC920729 vs. ExPASy Swiss-Prot
Match: GTR1_CHICK (Solute carrier family 2, facilitated glucose transporter member 1 OS=Gallus gallus GN=SLC2A1 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.030e-12
Identity = 39/104 (37.50%), Postives = 61/104 (58.65%), Query Frame = 2
Query:  263 YSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAW---WLDLGRLLVGYGMGLLSYVVPVYIADITPKNLRGGFTTVHQLMICIGV 565
            +SL  +I ++G MIG+   G   +  GRR +M  S+I+  +  V++ FSK A     L LGR ++G   GL +  VP+Y+ +++P  LRG   T HQL I +G+
Sbjct:   64 WSLSVAIFSVGGMIGSFSVGLFVNRFGRRNSMLMSNILAFLAAVLMGFSKMALSFEMLILGRFIIGLYSGLTTGFVPMYVGEVSPTALRGALGTFHQLGIVLGI 167          
The following BLAST results are available for this feature:
BLAST of FC920729 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
GTR12_BOVIN1.385e-1230.56Solute carrier family 2, facilitated glucose trans... [more]
ARAE_KLEOX1.385e-1227.66Arabinose-proton symporter OS=Klebsiella oxytoca G... [more]
GTR5_RAT1.809e-1236.70Solute carrier family 2, facilitated glucose trans... [more]
STP8_ARATH3.086e-1228.93Sugar transport protein 8 OS=Arabidopsis thaliana ... [more]
PLT2_ARATH3.086e-1229.85Putative polyol transporter 2 OS=Arabidopsis thali... [more]
GTR5_BOVIN3.086e-1230.82Solute carrier family 2, facilitated glucose trans... [more]
GTR10_MOUSE3.086e-1227.78Solute carrier family 2, facilitated glucose trans... [more]
MYCT_RAT4.030e-1231.78Proton myo-inositol cotransporter OS=Rattus norveg... [more]
MYCT_MOUSE4.030e-1231.78Proton myo-inositol cotransporter OS=Mus musculus ... [more]
GTR1_CHICK4.030e-1237.50Solute carrier family 2, facilitated glucose trans... [more]

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Properties
Property NameValue
Genbank descriptionC32012C09EF RVDevelop1 Citrus clementina cDNA clone C32012C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920729 ID=FC920729; Name=FC920729; organism=Citrus clementina; type=EST; length=582bp
TGTGAAATTTTTGTGATCTCTGGCAAAGAAAGTGTTACCGGAAGAAGGGT
TATCGAGCTCTTTGCTTAAGGAGAAGTCTCAGGTACATGGTGCTGGCAGT
AGTGGCGGTGAGAGTGGAAGTGGAAGTGCTTCTGCCACAAGTGCTGTTGT
GCTCAGCACTTTCGTTGCTGTCTGTGGTTCCTATGTTTTTGGTTCTGCTA
TTGGGTATTCATCACCTGCTCAGTCTGGAATAACCAATGATCTTGGTCTT
TCTGTCGCGGAGTATTCACTTTTCGGTTCAATATTGACGATCGGAGCTAT
GATAGGTGCAATAATGAGTGGGAAAATAGCGGATTACATTGGCCGAAGAG
GTACAATGGGCTTCTCAGACATAGTTTGCATCATTGGATGGGTTATAATT
GTATTCTCGAAGGCTGCTTGGTGGCTAGATCTTGGAAGGCTGTTGGTGGG
ATATGGGATGGGTCTCCTTTCTTACGTGGTACCTGTGTATATAGCTGATA
TCACACCCAAAAATCTTCGAGGAGGATTTACAACAGTCCATCAGTTGATG
ATATGTATTGGCGTGTCAATGACATATCTCAT
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