FC920731

Overview
NameFC920731
Unique NameFC920731
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length740
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920731 vs. ExPASy Swiss-Prot
Match: VAPB_HUMAN (Vesicle-associated membrane protein-associated protein B/C OS=Homo sapiens GN=VAPB PE=1 SV=3)

HSP 1 Score: 70.0922 bits (170), Expect = 1.427e-11
Identity = 42/136 (30.88%), Postives = 74/136 (54.41%), Query Frame = 2
Query:  179 MMSTGELLNIEPQ-ELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGVVLPRSTCDVIVTMQSQKEAPPDMQCKDKFLLQGVVASPGATAKDITPEMFNREAGHHVEECKLRVLYVAPPRPPSP 583
            M    ++L++EPQ EL+F       ++ +L+L N TD  V FKVKTT P++YCVRPN+G++   ++ +V V +Q   +  P+ + K KF++Q + A    +  +    ++       + + KLR ++  P     P
Sbjct:    1 MAKVEQVLSLEPQHELKFRGPFTDVVTTNLKLGNPTDRNVCFKVKTTAPRRYCVRPNSGIIDAGASINVSVMLQ-PFDYDPNEKSKHKFMVQSMFAPTDTSDME---AVWKEAKPEDLMDSKLRCVFELPAENDKP 132          
BLAST of FC920731 vs. ExPASy Swiss-Prot
Match: VAPB_BOVIN (Vesicle-associated membrane protein-associated protein B OS=Bos taurus GN=VAPB PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.427e-11
Identity = 42/136 (30.88%), Postives = 74/136 (54.41%), Query Frame = 2
Query:  179 MMSTGELLNIEPQ-ELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGVVLPRSTCDVIVTMQSQKEAPPDMQCKDKFLLQGVVASPGATAKDITPEMFNREAGHHVEECKLRVLYVAPPRPPSP 583
            M    ++L++EPQ EL+F       ++ +L+L N TD  V FKVKTT P++YCVRPN+G++   ++ +V V +Q   +  P+ + K KF++Q + A    +  +    ++       + + KLR ++  P     P
Sbjct:    1 MAKVEQVLSLEPQHELKFRGPFTDVVTTNLKLGNPTDRNVCFKVKTTAPRRYCVRPNSGIIDAGASINVSVMLQ-PFDYDPNEKSKHKFMVQSMFAPTDTSDME---AVWKEAKPEDLMDSKLRCVFELPAENDKP 132          
BLAST of FC920731 vs. ExPASy Swiss-Prot
Match: VAPA_BOVIN (Vesicle-associated membrane protein-associated protein A OS=Bos taurus GN=VAPA PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.427e-11
Identity = 45/154 (29.22%), Postives = 78/154 (50.65%), Query Frame = 2
Query:  212 PQELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGVVLPRSTCDVIVTMQSQKEAPPDMQCKDKFLLQGVVASPGATAKDITPEMFNREAGHHVEECKLRVLYVAP----------PRPPSPVHEGSEEGSSPR---ASVSD 634
            P +L+F       ++ +L+L N +D  V FKVKTT P++YCVRPN+G++ P  T  V V +Q   +  P+ + K KF++Q + A P  +  +    ++       + + KLR ++  P          P    P++   ++G  P+    S+SD
Sbjct:   20 PTDLKFKGPFTDVVTTNLKLRNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGLTVTVSVMLQ-PFDYDPNEKSKHKFMVQTIFAPPNISDME---AVWKEAKPDELMDSKLRCVFEMPNENDKLNDMEPSKAVPLNAAKQDGPVPKPHSVSLSD 169          
BLAST of FC920731 vs. ExPASy Swiss-Prot
Match: SCS2_YEAST (Vesicle-associated membrane protein-associated protein SCS2 OS=Saccharomyces cerevisiae GN=SCS2 PE=1 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 4.153e-11
Identity = 44/126 (34.92%), Postives = 62/126 (49.21%), Query Frame = 2
Query:  200 LNIEPQELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGVVLPRSTCDVIVTMQSQKEAP-PDMQCKDKFLLQGVVASPGATAKDITPEMFNREAGHHVEEC--KLRVLYVAPP 568
            + I P  L +   L +Q +    +SN +D  +AFKVKTT PK YCVRPN  VV P  T  V V      E P  D +C+DKFL+  + +      K +     + EA    +    K++V Y+  P
Sbjct:    4 VEISPDVLVYKSPLTEQSTEYASISNNSDQTIAFKVKTTAPKFYCVRPNAAVVAPGETIQVQVIFLGLTEEPAADFKCRDKFLVITLPSPYDLNGKAVADVWSDLEAEFKQQAISKKIKVKYLISP 129          
The following BLAST results are available for this feature:
BLAST of FC920731 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
VAPB_HUMAN1.427e-1130.88Vesicle-associated membrane protein-associated pro... [more]
VAPB_BOVIN1.427e-1130.88Vesicle-associated membrane protein-associated pro... [more]
VAPA_BOVIN1.427e-1129.22Vesicle-associated membrane protein-associated pro... [more]
SCS2_YEAST4.153e-1134.92Vesicle-associated membrane protein-associated pro... [more]

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Properties
Property NameValue
Genbank descriptionC32012C12EF RVDevelop1 Citrus clementina cDNA clone C32012C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920731 ID=FC920731; Name=FC920731; organism=Citrus clementina; type=EST; length=740bp
GCTCTCTCTGTCATTTAATTCGCCGTCGTTTCTTTGAATCTCTCTTTCTA
TCTTGTCTTTCGCCTGCCCACTCGTGGCTAGCTAGAATTTTCCTTTCCGC
CGGCACCGGGACTACTTTCCCTTGCCGGAAACTGCCAGTTACTTTCTATC
TCCAGCCCCAACCTAAATCGTTTGCGTCATGATGAGTACTGGCGAGCTTC
TCAACATCGAACCTCAGGAGCTTCAATTTCCTTTTGAATTGAGGAAGCAG
ATCTCGTGCTCTCTACAGTTATCAAATAAGACAGATAATTATGTGGCTTT
CAAGGTTAAAACGACAAATCCAAAGAAGTATTGTGTTAGGCCCAACACTG
GCGTGGTCTTGCCGAGGTCTACATGTGATGTTATAGTTACAATGCAATCG
CAAAAGGAGGCCCCACCAGACATGCAATGCAAAGACAAGTTCTTACTTCA
GGGTGTGGTTGCCAGTCCTGGAGCCACAGCTAAAGATATTACTCCAGAGA
TGTTCAATAGGGAGGCGGGTCATCATGTTGAAGAGTGCAAACTGAGGGTT
CTTTATGTGGCTCCACCTCGGCCTCCATCTCCAGTTCACGAAGGATCAGA
AGAAGGTTCTTCACCGAGGGCATCAGTTTCGGATAATGGGAATTTCAGTG
CTTCCGAATTTTCAGCCGCTGCTTCAAGAGCTTTGTTGAGCATATGAGCC
GCAGATAGTCACAGAGGCAAGGCTCTCATTCAAGCTAACT
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