FC920733

Overview
NameFC920733
Unique NameFC920733
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length662
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920733 vs. ExPASy Swiss-Prot
Match: CHI2_ORYSJ (Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht2 PE=1 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.004e-55
Identity = 110/203 (54.19%), Postives = 137/203 (67.49%), Query Frame = 3
Query:   90 GGSAQNCGSGVVCGERDTGHG----------TDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYCY--RYCPCPLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPS 662
            G ++  CG G  C  + +G G          +DG  +G I+ R++FE LL +RND  CPARGFYTY+AF+ AA AFPAFG +GN   RKRE+AAF  QT  ETTGGWP AP G ++WGYC+ +Q   P SDYC      PC    +YYGRGPIQL++N NY   G A+GVDLL+NPDL+ATD  +SFK+A+WFWMT Q  KPS
Sbjct:   57 GTTSDFCGDG--CQSQCSGCGPTPTPTPPSPSDG--VGSIVPRDLFERLLLHRNDGACPARGFYTYEAFLAAAAAFPAFGGTGNTETRKREVAAFLGQTSHETTGGWPTAPDGPFSWGYCF-KQEQNPPSDYCQPSPEWPCAPGRKYYGRGPIQLSFNFNYGPAGRAIGVDLLSNPDLVATDATVSFKTALWFWMTPQGNKPS 254          
BLAST of FC920733 vs. ExPASy Swiss-Prot
Match: CHI9_ORYSJ (Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht9 PE=2 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 1.311e-55
Identity = 103/186 (55.38%), Postives = 129/186 (69.35%), Query Frame = 3
Query:  111 GSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYCYRYC--PCPLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPS 662
            G G   G    G G  GG +  ++S+E+FE LL +RND  CPARGFYTYDA + AA AFP F  +G++  RKRE+AAF  QT  ETTGGW  AP G Y+WGYC+  ++   AS YC      PC    +Y+GRGPIQL++N NY   GEA+G DLLNNP+L+A+DPV+SFK+A+WFWMT Q PKPS
Sbjct:   67 GGGGGGGGGGGGGGGGGGAVEAVVSKELFEQLLLHRNDAACPARGFYTYDALVTAAAAFPDFAATGDDEARKREVAAFLGQTSHETTGGWATAPDGPYSWGYCFKEEIGATAS-YCVPSAEWPCAPDKKYFGRGPIQLSYNYNYGPAGEAIGEDLLNNPELVASDPVVSFKTALWFWMTPQSPKPS 251          
BLAST of FC920733 vs. ExPASy Swiss-Prot
Match: CHIA_SECCE (Basic endochitinase A OS=Secale cereale GN=rsca PE=1 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 3.229e-54
Identity = 107/205 (52.20%), Postives = 132/205 (64.39%), Query Frame = 3
Query:   90 GGSAQNCGSGVVCGERDTGHG------------TDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYC--YRYCPCPLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPS 662
            G ++  CG G  C  +  G G            + GG +  I+SR +F+ +L +RND  C A+GFYTYDAF+ AA AFP FG +G+   RKRE+AAF AQT  ETTGGW  AP G +AWGYC+ +Q     S+YC      PC     YYGRGPIQL+ N NY   G A+GVDLL NPDL+ATDP +SFK+A+WFWMTAQ PKPS
Sbjct:   44 GSTSDYCGDG--CQSQCAGCGGGGTPVTPTPTPSGGGGVSSIVSRALFDRMLLHRNDGACQAKGFYTYDAFVAAAGAFPGFGTTGSTDTRKREVAAFLAQTSHETTGGWATAPDGAFAWGYCF-KQERGATSNYCTPSAQWPCAPGKSYYGRGPIQLSHNYNYGPAGRAIGVDLLRNPDLVATDPTVSFKTAMWFWMTAQAPKPS 245          
BLAST of FC920733 vs. ExPASy Swiss-Prot
Match: CHIC_SECCE (Basic endochitinase C OS=Secale cereale GN=rscc PE=1 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 7.194e-54
Identity = 101/173 (58.38%), Postives = 122/173 (70.52%), Query Frame = 3
Query:  150 GTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYC--YRYCPCPLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPS 662
            GT  G +  IIS   F+ +L +RND  C A+GFYTYDAF+ AA AFP FG +G+   RKR++AAF AQT  ETTGGW  AP G +AWGYC+ +Q    A+DYC      PC    +YYGRGPIQL+ N NY   G A+GVDLL NPDL+ATDP +SFK+A+WFWMTAQ PKPS
Sbjct:   19 GTAHGSVSSIISHAQFDRMLLHRNDGACQAKGFYTYDAFVAAANAFPGFGATGSTDARKRDVAAFLAQTSHETTGGWATAPDGAFAWGYCF-KQERGAAADYCTPSAQWPCAPGKRYYGRGPIQLSHNYNYGPAGRAIGVDLLRNPDLVATDPTVSFKTALWFWMTAQAPKPS 190          
BLAST of FC920733 vs. ExPASy Swiss-Prot
Match: CHI2_HORVU (26 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 7.194e-54
Identity = 101/173 (58.38%), Postives = 122/173 (70.52%), Query Frame = 3
Query:  150 GTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYC--YRYCPCPLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPS 662
            GT  G +  I+SR  F+ +L +RND  C A+GFYTYDAF+ AA AFP FG +G+   +KRE+AAF AQT  ETTGGW  AP G +AWGYC+ +Q    +SDYC      PC    +YYGRGPIQL+ N NY   G A+GVDLL NPDL+ATD  + FK+AIWFWMTAQPPKPS
Sbjct:   19 GTARGSVSSIVSRAQFDRMLLHRNDGACQAKGFYTYDAFVAAAAAFPGFGTTGSADAQKREVAAFLAQTSHETTGGWATAPDGAFAWGYCF-KQERGASSDYCTPSAQWPCAPGKRYYGRGPIQLSHNYNYGPAGRAIGVDLLANPDLVATDATVGFKTAIWFWMTAQPPKPS 190          
BLAST of FC920733 vs. ExPASy Swiss-Prot
Match: CHI1_HORVU (26 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=4)

HSP 1 Score: 209.92 bits (533), Expect = 9.396e-54
Identity = 107/202 (52.97%), Postives = 130/202 (64.36%), Query Frame = 3
Query:   93 GSAQNCGSGVVCGERDTGHG----------TDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYC--YRYCPCPLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPS 662
            GS   CG G  C  + +G G          + GG +  I+SR +F+ +L +RND  C A+GFYTYDAF+ AA AF  FG +G    RKRE+AAF AQT  ETTGGW  AP G +AWGYC+ +Q     S+YC      PC     YYGRGPIQL+ N NY   G A+GVDLL NPDL+ATDP +SFK+A+WFWMTAQ PKPS
Sbjct:   44 GSTPYCGDG--CQSQCSGCGGGSTPVTPTPSGGGGVSSIVSRALFDRMLLHRNDGACQAKGFYTYDAFVAAASAFRGFGTTGGTDTRKREVAAFLAQTSHETTGGWATAPDGAFAWGYCF-KQERGATSNYCTPSAQWPCAPGKSYYGRGPIQLSHNYNYGPAGRAIGVDLLRNPDLVATDPTVSFKTAMWFWMTAQAPKPS 242          
BLAST of FC920733 vs. ExPASy Swiss-Prot
Match: CHI1_ORYSJ (Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht1 PE=2 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.039e-52
Identity = 100/204 (49.02%), Postives = 133/204 (65.20%), Query Frame = 3
Query:   90 GGSAQNCGSGVVCGERDTGH----------GTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVS-RPASDYCYR--YCPCPLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPS 662
            G ++  CGSG  C  + +G           G  G  +  I+SR +F+ +L +RND  CPA+ FYTYDAF+ AA AFP+F  +G+   RKRE+AAF AQT  ETTGGW  AP G Y+WGYC+  + +    SDYC +    PC    +YYGRGPIQ+++N NY   G+A+G +LL+NPDL+A+D  +SFK+A WFWMT Q PKPS
Sbjct:   45 GSTSAYCGSG--CQSQCSGSCGGGGPTPPSGGGGSGVASIVSRSLFDQMLLHRNDAACPAKNFYTYDAFVAAANAFPSFATTGDAATRKREVAAFLAQTSHETTGGWATAPDGPYSWGYCFKEENNGNVGSDYCVQSSQWPCAAGKKYYGRGPIQISYNYNYGPAGQAIGSNLLSNPDLVASDATVSFKTAFWFWMTPQSPKPS 246          
BLAST of FC920733 vs. ExPASy Swiss-Prot
Match: CHIX_PEA (Endochitinase OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.357e-52
Identity = 92/170 (54.12%), Postives = 121/170 (71.18%), Query Frame = 3
Query:  153 TDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYCYRYCPCPLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPS 662
            T GG++G+++   +F+ +L YRND RC   GFYTYDAFI AA++F  FG +G++  +K+E+AAF AQT  ETTGGWP AP G YAWGYC++ + +        +  PC    +YYGRGPIQLT N NY   G+A+  DL+NNPDLL+T+P +SFK+AIWFWMT Q  KPS
Sbjct:   75 TGGGDVGRLVPSSLFDQMLKYRNDGRCAGHGFYTYDAFIAAARSFNGFGTTGDDNTKKKELAAFLAQTSHETTGGWPTAPDGPYAWGYCFVSEQNTQEVYCSPKDWPCAPGKKYYGRGPIQLTHNYNYGLAGQAIKEDLINNPDLLSTNPTVSFKTAIWFWMTPQANKPS 244          
BLAST of FC920733 vs. ExPASy Swiss-Prot
Match: CHI3_ORYSJ (Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht3 PE=2 SV=2)

HSP 1 Score: 206.068 bits (523), Expect = 1.357e-52
Identity = 101/200 (50.50%), Postives = 129/200 (64.50%), Query Frame = 3
Query:   90 GGSAQNCGSGVV------CGERDTGHGTDGGE-LGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYC--YRYCPCPLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPS 662
            G ++  CG+G        CG   T   + GG  +  IIS  +F+ +L +RND  C A+GFYTYDAF+ AA A+P F  +G+    KRE+AAF AQT  ETTGGWP AP G Y+WGYC+  + +  A  YC      PC    +YYGRGPIQ+T+N NY   G+A+G DLLNNPDL+A+D  +SFK+A WFWMT Q PKPS
Sbjct:   43 GSTSDYCGAGCQSQCSGGCGGGPTPPSSGGGSGVASIISPSLFDQMLLHRNDQACAAKGFYTYDAFVAAANAYPDFATTGDADTCKREVAAFLAQTSHETTGGWPTAPDGPYSWGYCFKEENNGNAPTYCEPKPEWPCAAGKKYYGRGPIQITYNYNYGPAGQAIGSDLLNNPDLVASDATVSFKTAFWFWMTPQSPKPS 242          
BLAST of FC920733 vs. ExPASy Swiss-Prot
Match: CHID_SOLLC (Basic endochitinase (Fragment) OS=Solanum lycopersicum GN=CHI14 PE=2 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 6.733e-52
Identity = 95/167 (56.89%), Postives = 120/167 (71.86%), Query Frame = 3
Query:  168 LGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYC--YRYCPCPLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPS 662
            +  +IS+ +FE +L +RND  C A+GFYTY+AFI A K F AFG +G+   R +EIAAF AQT  ETTGGW  AP G Y+WGYCY R+   P  DYC   +  PC    +Y+GRGPIQ+++N NY   G A+GV+LLNNPDL+A D V+SFK+A+WFWMTAQ PKPS
Sbjct:    5 ISSLISKNLFERILVHRNDRACGAKGFYTYEAFITATKTFAAFGTTGDTNTRNKEIAAFLAQTSHETTGGWATAPDGPYSWGYCYNREQGSP-GDYCASSQQWPCAPGKKYFGRGPIQISYNYNYGAAGSAIGVNLLNNPDLVANDAVVSFKTALWFWMTAQQPKPS 170          
The following BLAST results are available for this feature:
BLAST of FC920733 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CHI2_ORYSJ1.004e-5554.19Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI9_ORYSJ1.311e-5555.38Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIA_SECCE3.229e-5452.20Basic endochitinase A OS=Secale cereale GN=rsca PE... [more]
CHIC_SECCE7.194e-5458.38Basic endochitinase C OS=Secale cereale GN=rscc PE... [more]
CHI2_HORVU7.194e-5458.3826 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=... [more]
CHI1_HORVU9.396e-5452.9726 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=... [more]
CHI1_ORYSJ1.039e-5249.02Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIX_PEA1.357e-5254.12Endochitinase OS=Pisum sativum PE=2 SV=1[more]
CHI3_ORYSJ1.357e-5250.50Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHID_SOLLC6.733e-5256.89Basic endochitinase (Fragment) OS=Solanum lycopers... [more]

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Properties
Property NameValue
Genbank descriptionC32012D03EF RVDevelop1 Citrus clementina cDNA clone C32012D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920733 ID=FC920733; Name=FC920733; organism=Citrus clementina; type=EST; length=662bp
TAAAGGATAATTGTCATCATAACTCTTGCTTTCAAATGAGGCTCATTGGG
TCCTTACTAATTTTCTCTCTAGCCTTATCTTTTGTACTAGGAGGTTCAGC
ACAGAATTGTGGAAGCGGCGTTGTGTGCGGTGAACGTGATACTGGCCACG
GGACGGATGGCGGTGAACTGGGCAAGATCATCTCAAGGGAGATGTTTGAA
GACTTGCTTCCGTATAGAAATGATGTACGATGCCCTGCCAGAGGCTTCTA
CACTTACGATGCTTTTATAGAGGCAGCCAAAGCTTTTCCAGCCTTTGGTA
ACTCTGGAAATGAAACCATGCGTAAAAGAGAAATTGCTGCCTTTTTTGCC
CAAACTGGCGATGAAACTACTGGGGGATGGCCCGATGCACCTGGTGGAGA
ATATGCTTGGGGATATTGCTATATTAGGCAAGTTAGCCGCCCTGCGTCCG
ACTACTGTTATCGTTACTGTCCATGTCCTTTGCCAGGGCAATACTATGGC
CGAGGTCCAATTCAACTCACTTGGAATTGCAATTACTTAAGGTGCGGAGA
AGCCTTGGGGGTGGACTTGTTGAACAATCCAGACCTTCTTGCCACTGATC
CAGTACTATCATTCAAGTCAGCAATCTGGTTCTGGATGACTGCACAGCCA
CCAAAGCCATCG
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