FC920733
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC920733 vs. ExPASy Swiss-Prot
Match: CHIB_MAIZE (Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1) HSP 1 Score: 121.324 bits (303), Expect = 4.395e-27 Identity = 66/193 (34.20%), Postives = 99/193 (51.30%), Query Frame = 3 Query: 90 GGSAQNCGSGVVCGERDTGHGTDGG-----ELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYC---YRYCPCPLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTA 644 G + + CG G G +G G G + +++ F + C + FYT AF+ A K +P F + G++ KREIAAFFA ET +CYI ++++ ++ YC R PC +YYGRGP+Q++WN NY G A+G D L +P +A D V++FK+A+WFWM + Sbjct: 38 GTTDEYCGDGCQSGPCRSGRGGGGSGGGGANVASVVTSSFFNGIKNQAGS-GCEGKNFYTRSAFLSAVKGYPGFAHGGSQVQGKREIAAFFAHATHETGH-------------FCYISEINK-SNAYCDPTKRQWPCAAGQKYYGRGPLQISWNYNYGPAGRAIGFDGLGDPGRVARDAVVAFKAALWFWMNS 215
BLAST of FC920733 vs. ExPASy Swiss-Prot
Match: CHIA_MAIZE (Endochitinase A OS=Zea mays PE=1 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 3.150e-25 Identity = 63/179 (35.20%), Postives = 93/179 (51.96%), Query Frame = 3 Query: 111 GSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYC---YRYCPCPLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWM 638 G G G G G+ G + +++ F + C + FYT AF+ A A+P F + G E KREIAAFFA ET +CYI ++++ ++ YC R PC +YYGRGP+Q++WN NY G +G + L +P+ +A D V++FK+A+WFWM Sbjct: 61 GGGGGGGGGGGGGGSGGANVANVVTDAFFNGIKNQAGS-GCEGKNFYTRSAFLSAVNAYPGFAHGGTEVEGKREIAAFFAHVTHETGH-------------FCYISEINK-SNAYCDASNRQWPCAAGQKYYGRGPLQISWNYNYGPAGRDIGFNGLADPNRVAQDAVIAFKTALWFWM 224
BLAST of FC920733 vs. ExPASy Swiss-Prot
Match: CHI4_ORYSJ (Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht4 PE=2 SV=2) HSP 1 Score: 114.005 bits (284), Expect = 7.017e-25 Identity = 63/185 (34.05%), Postives = 89/185 (48.11%), Query Frame = 3 Query: 93 GSAQNCGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYC---YRYCPCPLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWM 638 G G G G G + + E F + + + C + FYT +F+ AA+++ F N KREIAAFFA ET CYI +++ DYC + PC +YYGRGP+Q++WN NY G+ +G D L +PD +A DP +SFK+A+WFWM Sbjct: 58 GPCWGSGGEAAAGMAGRKAGAGAGVSVESVVTEAFFNGIKNQAPNGCAGKSFYTRQSFLNAARSYSGFANDRTNDDSKREIAAFFAHVTHETGH-------------MCYINEINGANMDYCDKSNKQWPCQPGKKYYGRGPLQISWNFNYGPAGKNIGFDGLRDPDKVAQDPTISFKTALWFWM 229
BLAST of FC920733 vs. ExPASy Swiss-Prot
Match: CHI5_ORYSJ (Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht5 PE=2 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 9.164e-25 Identity = 64/186 (34.41%), Postives = 91/186 (48.92%), Query Frame = 3 Query: 90 GGSAQNCGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYC---YRYCPCPLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWM 638 GG G G G G G G + +++ F + + C + FYT +F+ AA ++ F KREIAAFFA ET CYI +++ + DYC + PC +YYGRGP+Q++WN NY G+ +G D L +PD +A DP +SFK+A+WFWM Sbjct: 64 GGGGGGGGGG---GGGGGGGGGSGVSVESVVTEAFFNGIKNQAPN-GCAGKNFYTRQSFLNAAHSYSGFARDRTNDDSKREIAAFFAHVTHETGH-------------MCYINEINGASMDYCDKNNKQWPCQPGKKYYGRGPLQISWNYNYGPAGQNIGFDGLRDPDRVAQDPTISFKTALWFWM 232
BLAST of FC920733 vs. ExPASy Swiss-Prot
Match: CHI4_PHAVU (Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE=2 SV=1) HSP 1 Score: 111.694 bits (278), Expect = 3.482e-24 Identity = 75/224 (33.48%), Postives = 106/224 (47.32%), Query Frame = 3 Query: 54 LLIFSLALSFVLGG---SAQNCG--SGVVC--------GERDTGHGTDGGEL------------GKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYC----YRYCPCPLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWM 638 L++ +A++ V+G SAQNCG G+ C GE G G G I++ + ++ + D C + FYT DAF+ A ++ FG G+E KREIAA FA ET +CYI ++ + DYC PC Y+GRGPIQL+WN NY G A D L P+ ++ D V+SFK+A+W+WM Sbjct: 5 LVLVLVAVALVMGPKNVSAQNCGCAEGLCCSQYGYCGTGEDYCGTGCQQGPCTTASPPPSNNVNADILTADFLNGIID-QADSGCAGKNFYTRDAFLSALNSYTDFGRVGSEDDSKREIAAAFAHFTHETGH-------------FCYIEEIDGASKDYCDEESIAQYPCSSSKGYHGRGPIQLSWNFNYGPAGSANNFDGLGAPETVSNDVVVSFKTALWYWM 214 The following BLAST results are available for this feature:
BLAST of FC920733 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 55
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Sequences
The
following sequences are available for this feature:
EST sequence >FC920733 ID=FC920733; Name=FC920733; organism=Citrus clementina; type=EST; length=662bpback to top |