FC920739

Overview
NameFC920739
Unique NameFC920739
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length724
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12850 contig Ccv1_Contig12850:485..1208. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: PR6AB_XENLA (26S protease regulatory subunit 6A-B OS=Xenopus laevis GN=psmc3-B PE=2 SV=1)

HSP 1 Score: 257.299 bits (656), Expect = 6.065e-68
Identity = 120/226 (53.10%), Postives = 168/226 (74.34%), Query Frame = 2
Query:    2 YYVGILSFVDKDQLEPGCAILMHNKLLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVQVILGTNRIESLDPALLRPGRIDRKIDFLFP 679
            Y++ ++  VD ++L+PG  + ++     ++  L  E D  V  M+V++ P E Y+DIGGLD QIQE+ EA+ LP+ H E +E++GI+PPKGV++YG PGTGKTLLA+A A  T ATFL++ G +L+Q ++GDG KLVR+ F +A + +PSI+FIDE+DA+G KR+D+   G+RE+QRTMLELLNQLDGF     V+VI  TNR++ LDPALLR GR+DRKI+F  P
Sbjct:   97 YFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFSLAKEKAPSIIFIDELDAIGNKRFDSEKAGDREVQRTMLELLNQLDGFQPTTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMP 322          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: PRS8A_ARATH (26S protease regulatory subunit 8 homolog A OS=Arabidopsis thaliana GN=RPT6A PE=2 SV=1)

HSP 1 Score: 256.529 bits (654), Expect = 1.035e-67
Identity = 127/227 (55.95%), Postives = 173/227 (76.21%), Query Frame = 2
Query:    2 YYVGILSFVDKDQLEPGCAILMHNKLLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSG-GEREIQRTMLELLNQLDGFDSRGDVQVILGTNRIESLDPALLRPGRIDRKIDFLFP 679
            Y V I   +D  ++ P   + + N    +  +L  +VDP+V++MKVEK P  +Y  IGGLD QI+EIKE +ELP+ HPEL+E +GI  PKGV+LYG PGTGKTLLA+AVA+ T  TF+RV GSEL+QKY+G+G ++VRELF +A + +PSI+F+DEID++G+ R ++ SG G+ E+QRTMLELLNQLDGF++   ++V++ TNRI+ LD ALLRPGRIDRKI+F  P
Sbjct:  107 YVVDIDKSIDITKITPSTRVALRNDSYVLHLVLPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNP 333          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: PRS8_XENLA (26S protease regulatory subunit 8 OS=Xenopus laevis GN=psmc5 PE=2 SV=2)

HSP 1 Score: 254.988 bits (650), Expect = 3.010e-67
Identity = 124/223 (55.61%), Postives = 173/223 (77.58%), Query Frame = 2
Query:    2 YYVGILSFVDKDQLEPGCAILMHNKLLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVQVILGTNRIESLDPALLRPGRIDRKIDF 670
            + V +   +D + + P C + + N   ++  +L ++VDP+VS+M VEK P  +Y  IGGLD QI+EIKE +ELP+ HPE +E +GI  PKGV+LYG PGTGKTLLA+AVA+ T  TF+RV GSEL+QK++G+G ++VRELF +A + +PSI+F+DEID++G+ R +  SGG+ E+QRTMLELLNQLDGF++  +++VI+ TNRI+ LD ALLRPGRIDRKI+F
Sbjct:   90 FVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPEHFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGS-RLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIEF 311          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: PS6AB_ARATH (26S protease regulatory subunit 6A homolog B OS=Arabidopsis thaliana GN=RPT5B PE=1 SV=3)

HSP 1 Score: 254.218 bits (648), Expect = 5.135e-67
Identity = 121/228 (53.07%), Postives = 167/228 (73.25%), Query Frame = 2
Query:    5 YVGILSFVDKDQLEPGCAILMHNKLLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVQVILGTNRIESLDPALLRPGRIDRKIDFLFPISD 688
            ++ ++  VD D L+PG  + ++     ++  L  E D  V  M+V++ P E Y DIGGL+ QIQE+ EA+ LP+TH E +E +GI+PPKGV+LYG PGTGKTL+A+A A  T+ATFL++ G +L+Q ++GDG KLVR+ F +A + SP I+FIDEIDA+GTKR+D+   G+RE+QRTMLELLNQLDGF S   ++VI  TNR + LDPAL+R GR+DRKI+F  P  +
Sbjct:  117 FLPVVGLVDPDTLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKEQFEKLGIRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFLLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEE 344          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: PRS6A_SOLLC (26S protease regulatory subunit 6A homolog OS=Solanum lycopersicum GN=TBP1 PE=2 SV=1)

HSP 1 Score: 254.218 bits (648), Expect = 5.135e-67
Identity = 119/228 (52.19%), Postives = 168/228 (73.68%), Query Frame = 2
Query:    5 YVGILSFVDKDQLEPGCAILMHNKLLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVQVILGTNRIESLDPALLRPGRIDRKIDFLFPISD 688
            ++ ++  VD D L+PG  + ++     ++  L  E D  V  M+V++ P E Y DIGGL+ QIQE+ EA+ LP+TH E ++ +G++PPKGV+LYG PGTGKTL+A+A A  T+ATFL++ G +L+Q ++GDG KLVR+ F++A + SP I+FIDEIDA+GTKR+D+   G+RE+QRTMLELLNQLDGF S   ++VI  TNR + LDPAL+R GR+DRKI+F  P  +
Sbjct:  117 FLPVVGLVDPDNLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYHDIGGLEKQIQELVEAIVLPMTHQERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEE 344          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: PS6AA_ARATH (26S protease regulatory subunit 6A homolog A OS=Arabidopsis thaliana GN=RPT5A PE=2 SV=1)

HSP 1 Score: 253.832 bits (647), Expect = 6.706e-67
Identity = 119/228 (52.19%), Postives = 168/228 (73.68%), Query Frame = 2
Query:    5 YVGILSFVDKDQLEPGCAILMHNKLLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVQVILGTNRIESLDPALLRPGRIDRKIDFLFPISD 688
            ++ ++  VD D L+PG  + ++     ++  L  E D  V  M+V++ P E Y DIGGL+ QIQE+ EA+ LP+TH E +E +G++PPKGV+LYG PGTGKTL+A+A A  T+ATFL++ G +L+Q ++GDG KLVR+ F++A + +P I+FIDEIDA+GTKR+D+   G+RE+QRTMLELLNQLDGF S   ++VI  TNR + LDPAL+R GR+DRKI+F  P  +
Sbjct:  118 FLPVVGLVDPDSLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFEKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKAPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDERIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEE 345          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: PRS6A_BRACM (26S protease regulatory subunit 6A homolog OS=Brassica campestris GN=TBP1 PE=2 SV=1)

HSP 1 Score: 253.832 bits (647), Expect = 6.706e-67
Identity = 119/228 (52.19%), Postives = 168/228 (73.68%), Query Frame = 2
Query:    5 YVGILSFVDKDQLEPGCAILMHNKLLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVQVILGTNRIESLDPALLRPGRIDRKIDFLFPISD 688
            ++ ++  VD D L+PG  + ++     ++  L  E D  V  M+V++ P E Y DIGGL+ QIQE+ EA+ LP+TH E +E +G++PPKGV+LYG PGTGKTL+A+A A  T+ATFL++ G +L+Q ++GDG KLVR+ F++A + +P I+FIDEIDA+GTKR+D+   G+RE+QRTMLELLNQLDGF S   ++VI  TNR + LDPAL+R GR+DRKI+F  P  +
Sbjct:  118 FLPVVGLVDPDSLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFEKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKAPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDERIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEE 345          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: PSMR_METB6 (Proteasome-activating nucleotidase OS=Methanoregula boonei (strain 6A8) GN=pan PE=3 SV=1)

HSP 1 Score: 253.062 bits (645), Expect = 1.144e-66
Identity = 124/218 (56.88%), Postives = 166/218 (76.15%), Query Frame = 2
Query:   26 VDKDQLEPGCAILMHNKLLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVQVILGTNRIESLDPALLRPGRIDRKIDFLFP 679
            V+ D ++PG    ++ + L++V LL    D  V  M++  +P E Y DIGGL  QI E++EAVELPL  PEL+  IGI+PPKGV+LYG PGTGKTLLAKAVA+ T+A F+RVVGSEL+QKY+G+G +LVRELF +A   +P+I+FIDEIDAVG  R +A++ G+RE+QRT+++LL  +DGF++RGDV++I  TNRI+ LD ALLRPGR DR I+   P
Sbjct:  132 VNPDDIKPGARCTLNQQSLAIVELLPSSFDAQVYGMELVDSPQECYTDIGGLKEQINEVREAVELPLKRPELFTQIGIEPPKGVLLYGPPGTGKTLLAKAVAHETNAHFMRVVGSELVQKYIGEGARLVRELFDLAKKKAPTIIFIDEIDAVGASRTEANTSGDREVQRTLMQLLAGMDGFETRGDVKIIGATNRIDILDKALLRPGRFDRIIEIPLP 349          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: PRS6A_ORYSJ (26S protease regulatory subunit 6A homolog OS=Oryza sativa subsp. japonica GN=TBP1 PE=2 SV=2)

HSP 1 Score: 251.906 bits (642), Expect = 2.548e-66
Identity = 118/225 (52.44%), Postives = 168/225 (74.67%), Query Frame = 2
Query:    5 YVGILSFVDKDQLEPGCAILMHNKLLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVQVILGTNRIESLDPALLRPGRIDRKIDFLFP 679
            ++ ++  VD ++L+PG  + ++     ++  L  E D  V  M+V++ P E Y DIGGL+ QIQE+ EA+ LP+TH + ++ +GI+PPKGV+LYG PGTGKTL+A+A A  T+ATFL++ G +L+Q ++GDG KLVR+ F++A + SP I+FIDEIDA+GTKR+D+   G+RE+QRTMLELLNQLDGF S   ++VI  TNR + LDPAL+R GR+DRKI+F  P
Sbjct:  123 FLPVIGLVDPEKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKDRFQKLGIRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDERIKVIAATNRADILDPALMRSGRLDRKIEFPHP 347          
BLAST of FC920739 vs. ExPASy Swiss-Prot
Match: PSMR_METKA (Proteasome-activating nucleotidase OS=Methanopyrus kandleri GN=pan PE=3 SV=1)

HSP 1 Score: 251.521 bits (641), Expect = 3.328e-66
Identity = 123/228 (53.95%), Postives = 170/228 (74.56%), Query Frame = 2
Query:   26 VDKDQLEPGCAILMHNKLLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVQVILGTNRIESLDPALLRPGRIDRKIDFLFPISD*ETYFQI 709
            VD+++LEPG  + ++ + ++VV +L  E D  V  M+V+++P  SY DIGGLD QI+EI+E VE PL  PEL+E +G++PPKGV+LYG PGTGKTLLAKAVAN   ATF+R+   EL+QK++G+G +LVRELF +A + +PSI+FIDEIDA+G +R    + G+RE+QRT+ +LL ++DGFD   D++VI  TNR + LDPALLRPGR DR I    P+ D E  ++I
Sbjct:  133 VDRNELEPGANVALNQQSMAVVDVLPSEKDSRVLAMEVDESPDVSYDDIGGLDEQIREIREVVEKPLKEPELFEKVGVEPPKGVLLYGPPGTGKTLLAKAVANHADATFIRLAAPELVQKFIGEGARLVRELFELAREKAPSIIFIDEIDAIGARRMRDATSGDREVQRTLTQLLAEMDGFDPLDDIKVIAATNRKDILDPALLRPGRFDRHIK--IPLPDEEGRYEI 358          
The following BLAST results are available for this feature:
BLAST of FC920739 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 381
Match NameE-valueIdentityDescription
PR6AB_XENLA6.065e-6853.1026S protease regulatory subunit 6A-B OS=Xenopus la... [more]
PRS8A_ARATH1.035e-6755.9526S protease regulatory subunit 8 homolog A OS=Ara... [more]
PRS8_XENLA3.010e-6755.6126S protease regulatory subunit 8 OS=Xenopus laevi... [more]
PS6AB_ARATH5.135e-6753.0726S protease regulatory subunit 6A homolog B OS=Ar... [more]
PRS6A_SOLLC5.135e-6752.1926S protease regulatory subunit 6A homolog OS=Sola... [more]
PS6AA_ARATH6.706e-6752.1926S protease regulatory subunit 6A homolog A OS=Ar... [more]
PRS6A_BRACM6.706e-6752.1926S protease regulatory subunit 6A homolog OS=Bras... [more]
PSMR_METB61.144e-6656.88Proteasome-activating nucleotidase OS=Methanoregul... [more]
PRS6A_ORYSJ2.548e-6652.4426S protease regulatory subunit 6A homolog OS=Oryz... [more]
PSMR_METKA3.328e-6653.95Proteasome-activating nucleotidase OS=Methanopyrus... [more]

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Properties
Property NameValue
Genbank descriptionC32012D12EF RVDevelop1 Citrus clementina cDNA clone C32012D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920739 ID=FC920739; Name=FC920739; organism=Citrus clementina; type=EST; length=724bp
GTATTACGTCGGGATCTTGTCCTTTGTTGATAAGGATCAGCTGGAGCCTG
GCTGTGCTATTTTGATGCACAATAAGCTTCTTTCGGTCGTTGGGCTTCTG
CAAGATGAAGTAGATCCAATGGTGTCTGTGATGAAGGTTGAGAAGGCTCC
ATTGGAGTCTTATGCTGATATTGGAGGTTTAGATGCACAGATACAGGAGA
TTAAAGAAGCTGTTGAGCTTCCTCTTACCCATCCTGAACTTTATGAAGAT
ATCGGTATCAAGCCTCCTAAGGGAGTTATATTGTATGGAGAGCCTGGAAC
AGGCAAGACACTGCTTGCAAAGGCTGTGGCAAATTCAACATCTGCAACTT
TCTTGCGTGTTGTCGGTAGTGAATTAATTCAGAAGTACTTGGGTGATGGA
CCAAAATTAGTAAGGGAACTTTTCAGAGTTGCTGATGATCTGTCACCTTC
TATCGTCTTCATTGATGAAATTGATGCAGTTGGTACGAAGAGGTATGATG
CCCACTCAGGTGGCGAACGTGAAATTCAGAGAACCATGTTGGAGTTGCTG
AACCAGTTGGATGGGTTTGATTCTAGAGGAGATGTNCAAGTAATTCTTGG
CACCAACCGAATTGAAAGCCTGGATCCAGCTTTACTTCGGCCAGGTCGAA
TAGATAGAAAGATTGATTTCCTCTTCCCGATATCAGACTAGGAGACGTAT
TTCCAGATTCCACATCAGGATGAC
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