FC920741

Overview
NameFC920741
Unique NameFC920741
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length688
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920741_ssr38 microsatellite FC920741_ssr38:38..63. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig6366 contig Ccv1_Contig6366:69..756. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920741 vs. ExPASy Swiss-Prot
Match: AL1A1_MACFA (Retinal dehydrogenase 1 OS=Macaca fascicularis GN=ALDH1A1 PE=2 SV=3)

HSP 1 Score: 129.028 bits (323), Expect = 2.285e-29
Identity = 67/155 (43.23%), Postives = 98/155 (63.23%), Query Frame = 1
Query:  214 STAAVVEEPIIPP-VQISYTKNLINGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEG-PWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLXSEVPMVVRLLHYYAGWADKIHGLTVPGDGNTIFNFT 672
            S++   + P++P  ++I YTK  IN ++ D+ SGK FPV++P T E +  V EGD  D+D+AV  AR+AF  G PW  M   ER R++ + ADLIE++   LA +E+ N GK Y  +  +++   ++ L Y AGWADKI G T+P DGN  F +T
Sbjct:    2 SSSGTSDLPVLPTDLKIQYTKIFINNEWHDSVSGKKFPVFNPATEEELCQVEEGDKADVDKAVKAARQAFQIGSPWRTMDASERGRLLYKLADLIERDRLLLATMESMNGGKLYSNAYLNDLAGCIKTLRYCAGWADKIQGRTIPIDGN-FFTYT 155          
BLAST of FC920741 vs. ExPASy Swiss-Prot
Match: ALDH4_BACSU (Putative aldehyde dehydrogenase dhaS OS=Bacillus subtilis GN=dhaS PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.984e-29
Identity = 64/136 (47.06%), Postives = 89/136 (65.44%), Query Frame = 1
Query:  268 TKNL-INGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLXSEVPMVVRLLHYYAGWADKIHGLTVPGDGNTIFNFT 672
            TK L I+G+FV +ASG TF   +P T E +  + E  A D+D+AV  ARKAFD+G W  M+P  RSR+M + ADL+E++  ELA LET +NGKP  ++   ++P+ +  + YYAGW  KI G T+P  G   FN+T
Sbjct:   19 TKKLYIDGKFVPSASGATFDTPNPATGETLMTLYEAQAADVDKAVKAARKAFDQGEWRTMSPASRSRLMYKLADLMEEHKTELAQLETLDNGKPINETTNGDIPLAIEHMRYYAGWCTKITGQTIPVSG-AYFNYT 153          
BLAST of FC920741 vs. ExPASy Swiss-Prot
Match: AL1A1_HUMAN (Retinal dehydrogenase 1 OS=Homo sapiens GN=ALDH1A1 PE=1 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 2.984e-29
Identity = 65/145 (44.83%), Postives = 93/145 (64.14%), Query Frame = 1
Query:  241 IIPPVQISYTKNLINGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEG-PWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLXSEVPMVVRLLHYYAGWADKIHGLTVPGDGNTIFNFT 672
            ++  ++I YTK  IN ++ D+ SGK FPV++P T E +  V EGD ED+D+AV  AR+AF  G PW  M   ER R++ + ADLIE++   LA +E+ N GK Y  +  +++   ++ L Y AGWADKI G T+P DGN  F +T
Sbjct:   12 LLTDLKIQYTKIFINNEWHDSVSGKKFPVFNPATEEELCQVEEGDKEDVDKAVKAARQAFQIGSPWRTMDASERGRLLYKLADLIERDRLLLATMESMNGGKLYSNAYLNDLAGCIKTLRYCAGWADKIQGRTIPIDGN-FFTYT 155          
BLAST of FC920741 vs. ExPASy Swiss-Prot
Match: AL1A2_CHICK (Retinal dehydrogenase 2 OS=Gallus gallus GN=ALDH1A2 PE=2 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 3.898e-29
Identity = 62/141 (43.97%), Postives = 94/141 (66.67%), Query Frame = 1
Query:  253 VQISYTKNLINGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGP-WPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLXSEVPMVVRLLHYYAGWADKIHGLTVPGDGNTIFNFT 672
            ++I +TK  IN ++ ++ SG+ FPVY+P T E I  + E D  D D+AV  AR AF  G  W +M   ER +++ + ADL+E++   LA +E+ N+GKP++Q+   ++  V++ L YYAGWADKIHG+T+P DG+  F FT
Sbjct:   33 LEIKHTKIFINNEWQNSESGRVFPVYNPATGEQICEIQEADKVDTDKAVRAARLAFSLGSVWRRMDASERGQLLDKLADLVERDRAVLATMESLNSGKPFLQAFYVDLQGVIKTLRYYAGWADKIHGMTIPVDGD-YFTFT 172          
BLAST of FC920741 vs. ExPASy Swiss-Prot
Match: AL1A1_RAT (Retinal dehydrogenase 1 OS=Rattus norvegicus GN=Aldh1a1 PE=1 SV=3)

HSP 1 Score: 128.257 bits (321), Expect = 3.898e-29
Identity = 68/151 (45.03%), Postives = 96/151 (63.58%), Query Frame = 1
Query:  235 EPIIPP----VQISYTKNLINGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEG-PWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLXSEVPMVVRLLHYYAGWADKIHGLTVPGDGNTIFNFT 672
            +P +P     ++I +TK  IN ++ D+ SGK FPV +P T EVI +V EGD  D+D+AV  AR+AF  G PW  M   ER R++ + ADL+E++   LA +E  N GK +  +  S++   ++ L Y AGWADKIHG T+P DG+ IF FT
Sbjct:    6 QPAVPAPLANLKIQHTKIFINNEWHDSVSGKKFPVLNPATEEVICHVEEGDKADVDKAVKAARQAFQIGSPWRTMDASERGRLLNKLADLMERDRLLLATIEAINGGKVFANAYLSDLGGSIKALKYCAGWADKIHGQTIPSDGD-IFTFT 155          
BLAST of FC920741 vs. ExPASy Swiss-Prot
Match: ALDH_ENCBU (Aldehyde dehydrogenase OS=Enchytraeus buchholzi GN=ALDH PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.090e-29
Identity = 68/153 (44.44%), Postives = 97/153 (63.40%), Query Frame = 1
Query:  217 TAAVVEEPIIPPVQISYTKNLINGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFD-EGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLXSEVPMVVRLLHYYAGWADKIHGLTVPGDGNTIFNFT 672
            +A  + EP+   +++ +TK  IN +FVD+ SGKTF   +P T E +A V EGD  DID+AVA AR AF  +  + K    +R R++ + ADLIE +  +L  LET +NGKP+  S   +  M  ++L YYAG+ADKI G T+P DGN +F +T
Sbjct:    2 SAPKIPEPV-KDLKVEFTKIFINNEFVDSVSGKTFATINPSTGEKLAEVQEGDKADIDKAVAAARAAFKRDAEYRKHDASDRGRLLFKLADLIEAHRVQLRTLETLDNGKPFAMSYLGDTLMAQKVLRYYAGFADKIVGQTIPADGN-VFCYT 152          
BLAST of FC920741 vs. ExPASy Swiss-Prot
Match: AL1A1_MOUSE (Retinal dehydrogenase 1 OS=Mus musculus GN=Aldh1a1 PE=1 SV=5)

HSP 1 Score: 125.946 bits (315), Expect = 1.934e-28
Identity = 66/151 (43.71%), Postives = 96/151 (63.58%), Query Frame = 1
Query:  235 EPIIPP----VQISYTKNLINGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEG-PWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLXSEVPMVVRLLHYYAGWADKIHGLTVPGDGNTIFNFT 672
            +P +P     ++I +TK  IN ++ ++ SGK FPV +P T EVI +V EGD  D+D+AV  AR+AF  G PW  M   ER R++ + ADL+E++   LA +E  N GK +  +  S++   ++ L Y AGWADKIHG T+P DG+ IF +T
Sbjct:    6 QPAVPAPLADLKIQHTKIFINNEWHNSVSGKKFPVLNPATEEVICHVEEGDKADVDKAVKAARQAFQIGSPWRTMDASERGRLLNKLADLMERDRLLLATMEALNGGKVFANAYLSDLGGCIKALKYCAGWADKIHGQTIPSDGD-IFTYT 155          
BLAST of FC920741 vs. ExPASy Swiss-Prot
Match: AL1A1_HORSE (Retinal dehydrogenase 1 OS=Equus caballus GN=ALDH1A1 PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.309e-28
Identity = 62/145 (42.76%), Postives = 92/145 (63.45%), Query Frame = 1
Query:  241 IIPPVQISYTKNLINGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEG-PWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLXSEVPMVVRLLHYYAGWADKIHGLTVPGDGNTIFNFT 672
            ++  ++  YTK  IN ++ D+ SGK FPV++P T E +  V EGD ED+++AVA AR+AF  G PW  M   ER R++ + ADL+E++   LA +E+ N GK +  +   ++   ++ L Y AGWADKI G T+P DGN  F +T
Sbjct:   11 LLTDLKFQYTKIFINNEWHDSVSGKKFPVFNPATEEKLCEVEEGDKEDVNKAVAAARQAFQIGSPWRTMDASERGRLLYKLADLVERDRLILATMESMNGGKLFSNAYLMDLGGCLKTLRYCAGWADKIQGRTIPSDGN-FFTYT 154          
BLAST of FC920741 vs. ExPASy Swiss-Prot
Match: AL1A1_CHICK (Retinal dehydrogenase 1 OS=Gallus gallus GN=ALDH1A1 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.628e-28
Identity = 65/141 (46.10%), Postives = 89/141 (63.12%), Query Frame = 1
Query:  253 VQISYTKNLINGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEG-PWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLXSEVPMVVRLLHYYAGWADKIHGLTVPGDGNTIFNFT 672
            ++I YTK  IN ++ D+ SGK F V++P   E I  VAEGD  DID+AV  ARKAF+ G PW  M   ER R++ + ADL+E++   LA +E  + GK +  +   ++   ++ + Y AGWADKIHG TVP DGN  F FT
Sbjct:   24 LKIKYTKIFINNEWHDSVSGKKFEVFNPANEEKICEVAEGDKADIDKAVKAARKAFELGSPWRTMDASERGRLLNKLADLVERDRLTLATMEAIDGGKLFSTAYLMDLGACIKTIRYCAGWADKIHGRTVPMDGN-FFTFT 163          
BLAST of FC920741 vs. ExPASy Swiss-Prot
Match: ALDH1_MACPR (Aldehyde dehydrogenase, cytosolic 1 OS=Macroscelides proboscideus GN=ALDH1 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 9.600e-28
Identity = 63/141 (44.68%), Postives = 91/141 (64.54%), Query Frame = 1
Query:  253 VQISYTKNLINGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEG-PWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLXSEVPMVVRLLHYYAGWADKIHGLTVPGDGNTIFNFT 672
            ++I +TK  IN ++ D+ SGKTFPV++P T E I  V E D ED+D+AV  AR+AF  G PW  M   ER +++ + ADLIE++   LA LE+ N GK +  +   ++   +++L Y AGWADKI G T+P DG   F++T
Sbjct:   16 IKIQHTKLFINNEWHDSVSGKTFPVFNPATEEKICEVEEADKEDVDKAVKAAREAFQMGSPWRTMDASERGQLIYKLADLIERDRLLLATLESINAGKIFASAYLMDLDYCIKVLRYCAGWADKIQGRTIPVDGE-FFSYT 155          
The following BLAST results are available for this feature:
BLAST of FC920741 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 256
Match NameE-valueIdentityDescription
AL1A1_MACFA2.285e-2943.23Retinal dehydrogenase 1 OS=Macaca fascicularis GN=... [more]
ALDH4_BACSU2.984e-2947.06Putative aldehyde dehydrogenase dhaS OS=Bacillus s... [more]
AL1A1_HUMAN2.984e-2944.83Retinal dehydrogenase 1 OS=Homo sapiens GN=ALDH1A1... [more]
AL1A2_CHICK3.898e-2943.97Retinal dehydrogenase 2 OS=Gallus gallus GN=ALDH1A... [more]
AL1A1_RAT3.898e-2945.03Retinal dehydrogenase 1 OS=Rattus norvegicus GN=Al... [more]
ALDH_ENCBU5.090e-2944.44Aldehyde dehydrogenase OS=Enchytraeus buchholzi GN... [more]
AL1A1_MOUSE1.934e-2843.71Retinal dehydrogenase 1 OS=Mus musculus GN=Aldh1a1... [more]
AL1A1_HORSE4.309e-2842.76Retinal dehydrogenase 1 OS=Equus caballus GN=ALDH1... [more]
AL1A1_CHICK5.628e-2846.10Retinal dehydrogenase 1 OS=Gallus gallus GN=ALDH1A... [more]
ALDH1_MACPR9.600e-2844.68Aldehyde dehydrogenase, cytosolic 1 OS=Macroscelid... [more]

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Properties
Property NameValue
Genbank descriptionC32012E02EF RVDevelop1 Citrus clementina cDNA clone C32012E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920741 ID=FC920741; Name=FC920741; organism=Citrus clementina; type=EST; length=688bp
TGCAGTTGCAAGCTTCACTTGCTAGGACAAAAGTTGCAGAGAGAGAGAGA
GAGAGAGAGAGAGAAGAGTTGAATAGGTCGCTTCTTCGCTTTGGCTATGG
CAGCTGCTCGCAGAATCTCCACCTTGCTGTCTCGTTCTTTCCCTTCTGCT
TCTCCTTCTCTGCTTCGCTCTCTTGGTAGGGAGTCTAGCAGGGCAAGAGG
CATCAGCAGGTTTAGCACAGCTGCTGTTGTTGAAGAGCCAATCATTCCAC
CTGTTCAAATTAGTTACACTAAGAATTTAATAAATGGCCAATTTGTAGAC
GCAGCATCAGGCAAAACATTTCCGGTCTACGACCCTCGTACTGCTGAAGT
GATTGCTAATGTTGCTGAAGGAGATGCGGAAGATATTGACCGTGCAGTTG
CTACTGCTCGCAAGGCATTTGATGAGGGACCTTGGCCAAAGATGACCCCT
TATGAGAGGTCAAGGATTATGTTGCGGGCTGCTGACTTGATTGAGAAAAA
CATGGAGGAGCTGGCAGCTTTGGAGACATGGAACAATGGAAAGCCCTATG
TACAATCTCTCNAATCTGAAGTACCAATGGTGGTTCGCCTGTTGCACTAT
TATGCTGGATGGGCTGATAAAATCCATGGACTAACCGTCCCTGGTGATGG
AAATACCATATTCAACTTTACATGAACCATTGGCGTTG
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