FC920741

Overview
NameFC920741
Unique NameFC920741
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length688
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920741_ssr38 microsatellite FC920741_ssr38:38..63. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig6366 contig Ccv1_Contig6366:69..756. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920741 vs. ExPASy Swiss-Prot
Match: BETB_YERPS (Betaine aldehyde dehydrogenase OS=Yersinia pseudotuberculosis GN=betB PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.280e-18
Identity = 48/128 (37.50%), Postives = 73/128 (57.03%), Query Frame = 1
Query:  271 KNLINGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLXSEVPMVVRLLHYYAGWADKIHGLTVPGDGN 654
            K  ING + D+ SG TF   +P   E IA +   +A+D+D+AVA A++   +  W  MT  ERSRI+ RA D++    +ELAA+ET + GKP  ++   ++     +L YYAG    + G  +P  G+
Sbjct:    8 KLYINGAYTDSTSGDTFDAVNPANGECIAQLQAANAQDVDKAVAAAKQG--QPVWAAMTAMERSRILRRAVDILRDRNDELAAIETADTGKPLSETRSVDIVTGADVLEYYAGLIPALEGQQIPLRGS 133          
BLAST of FC920741 vs. ExPASy Swiss-Prot
Match: BETB_YERPP (Betaine aldehyde dehydrogenase OS=Yersinia pestis (strain Pestoides F) GN=betB PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.280e-18
Identity = 48/128 (37.50%), Postives = 73/128 (57.03%), Query Frame = 1
Query:  271 KNLINGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLXSEVPMVVRLLHYYAGWADKIHGLTVPGDGN 654
            K  ING + D+ SG TF   +P   E IA +   +A+D+D+AVA A++   +  W  MT  ERSRI+ RA D++    +ELAA+ET + GKP  ++   ++     +L YYAG    + G  +P  G+
Sbjct:    8 KLYINGAYTDSTSGDTFDAVNPANGECIAQLQAANAQDVDKAVAAAKQG--QPVWAAMTAMERSRILRRAVDILRDRNDELAAIETADTGKPLSETRSVDIVTGADVLEYYAGLIPALEGQQIPLRGS 133          
BLAST of FC920741 vs. ExPASy Swiss-Prot
Match: BETB_YERPN (Betaine aldehyde dehydrogenase OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=betB PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.280e-18
Identity = 48/128 (37.50%), Postives = 73/128 (57.03%), Query Frame = 1
Query:  271 KNLINGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLXSEVPMVVRLLHYYAGWADKIHGLTVPGDGN 654
            K  ING + D+ SG TF   +P   E IA +   +A+D+D+AVA A++   +  W  MT  ERSRI+ RA D++    +ELAA+ET + GKP  ++   ++     +L YYAG    + G  +P  G+
Sbjct:    8 KLYINGAYTDSTSGDTFDAVNPANGECIAQLQAANAQDVDKAVAAAKQG--QPVWAAMTAMERSRILRRAVDILRDRNDELAAIETADTGKPLSETRSVDIVTGADVLEYYAGLIPALEGQQIPLRGS 133          
BLAST of FC920741 vs. ExPASy Swiss-Prot
Match: BETB_YERPE (Betaine aldehyde dehydrogenase OS=Yersinia pestis GN=betB PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.280e-18
Identity = 48/128 (37.50%), Postives = 73/128 (57.03%), Query Frame = 1
Query:  271 KNLINGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLXSEVPMVVRLLHYYAGWADKIHGLTVPGDGN 654
            K  ING + D+ SG TF   +P   E IA +   +A+D+D+AVA A++   +  W  MT  ERSRI+ RA D++    +ELAA+ET + GKP  ++   ++     +L YYAG    + G  +P  G+
Sbjct:    8 KLYINGAYTDSTSGDTFDAVNPANGECIAQLQAANAQDVDKAVAAAKQG--QPVWAAMTAMERSRILRRAVDILRDRNDELAAIETADTGKPLSETRSVDIVTGADVLEYYAGLIPALEGQQIPLRGS 133          
BLAST of FC920741 vs. ExPASy Swiss-Prot
Match: BETB_YERPB (Betaine aldehyde dehydrogenase OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=betB PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.280e-18
Identity = 48/128 (37.50%), Postives = 73/128 (57.03%), Query Frame = 1
Query:  271 KNLINGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLXSEVPMVVRLLHYYAGWADKIHGLTVPGDGN 654
            K  ING + D+ SG TF   +P   E IA +   +A+D+D+AVA A++   +  W  MT  ERSRI+ RA D++    +ELAA+ET + GKP  ++   ++     +L YYAG    + G  +P  G+
Sbjct:    8 KLYINGAYTDSTSGDTFDAVNPANGECIAQLQAANAQDVDKAVAAAKQG--QPVWAAMTAMERSRILRRAVDILRDRNDELAAIETADTGKPLSETRSVDIVTGADVLEYYAGLIPALEGQQIPLRGS 133          
BLAST of FC920741 vs. ExPASy Swiss-Prot
Match: BETB_YERPA (Betaine aldehyde dehydrogenase OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=betB PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.280e-18
Identity = 48/128 (37.50%), Postives = 73/128 (57.03%), Query Frame = 1
Query:  271 KNLINGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLXSEVPMVVRLLHYYAGWADKIHGLTVPGDGN 654
            K  ING + D+ SG TF   +P   E IA +   +A+D+D+AVA A++   +  W  MT  ERSRI+ RA D++    +ELAA+ET + GKP  ++   ++     +L YYAG    + G  +P  G+
Sbjct:    8 KLYINGAYTDSTSGDTFDAVNPANGECIAQLQAANAQDVDKAVAAAKQG--QPVWAAMTAMERSRILRRAVDILRDRNDELAAIETADTGKPLSETRSVDIVTGADVLEYYAGLIPALEGQQIPLRGS 133          
BLAST of FC920741 vs. ExPASy Swiss-Prot
Match: BETB_STRMK (Betaine aldehyde dehydrogenase OS=Stenotrophomonas maltophilia (strain K279a) GN=betB PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.280e-18
Identity = 53/131 (40.46%), Postives = 75/131 (57.25%), Query Frame = 1
Query:  250 PVQISYTKNLINGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLXSEVPMVVRLLHYYAGWADKIHGLTVP 642
            PVQ  Y    I+GQ VDA SGKTF   +P T EVIA V      D++RAV +A +   +  W  MT  ERSRI+ RA +++ +  +ELA LET + GK   ++   ++     ++ YYAG A  I G+ +P
Sbjct:    5 PVQQLY----IHGQRVDATSGKTFKTVNPATGEVIAEVQVASQADVERAVQSASEG--QKVWAAMTAMERSRILRRAVEILRERNDELAHLETLDTGKALAETTTVDIVTGADVVEYYAGLATAIEGIQLP 129          
BLAST of FC920741 vs. ExPASy Swiss-Prot
Match: BETB_PSEMY (Betaine aldehyde dehydrogenase OS=Pseudomonas mendocina (strain ymp) GN=betB PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.280e-18
Identity = 49/121 (40.50%), Postives = 71/121 (58.68%), Query Frame = 1
Query:  280 INGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLXSEVPMVVRLLHYYAGWADKIHGLTVP 642
            I GQ+V A+SG+TF   +P T EV+A V      D+DRAVA+A +   +  W  MT  +RSRI+ RA D++ +  +ELA LET + GKP  ++   ++     +L YYAG    I G  +P
Sbjct:   11 IGGQYVAASSGQTFDSINPATGEVLAKVQRASQADVDRAVASAAEG--QKVWAAMTAMQRSRILRRAVDILRERNDELAELETLDTGKPLSETRYVDIVTGADVLEYYAGLIPAIEGEQIP 129          
BLAST of FC920741 vs. ExPASy Swiss-Prot
Match: BETB_PSEAE (Betaine aldehyde dehydrogenase OS=Pseudomonas aeruginosa GN=betB PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.896e-18
Identity = 48/124 (38.71%), Postives = 72/124 (58.06%), Query Frame = 1
Query:  271 KNLINGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLXSEVPMVVRLLHYYAGWADKIHGLTVP 642
            K  I G++V+A+SG TF   +P   EV+A V     ED++RAV +A +   +  W  MT  +RSRI+ RA D++ +  +ELAALET + GKP  ++   ++     +L YYAG    I G  +P
Sbjct:    8 KLYIGGRYVEASSGATFETINPANGEVLAKVQRASREDVERAVQSAVEG--QKVWAAMTAMQRSRILRRAVDILRERNDELAALETLDTGKPLAETRSVDIVTGADVLEYYAGLVPAIEGEQIP 129          
BLAST of FC920741 vs. ExPASy Swiss-Prot
Match: BETB_PSEAB (Betaine aldehyde dehydrogenase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=betB PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.896e-18
Identity = 48/124 (38.71%), Postives = 72/124 (58.06%), Query Frame = 1
Query:  271 KNLINGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLXSEVPMVVRLLHYYAGWADKIHGLTVP 642
            K  I G++V+A+SG TF   +P   EV+A V     ED++RAV +A +   +  W  MT  +RSRI+ RA D++ +  +ELAALET + GKP  ++   ++     +L YYAG    I G  +P
Sbjct:    8 KLYIGGRYVEASSGATFETINPANGEVLAKVQRASREDVERAVQSAVEG--QKVWAAMTAMQRSRILRRAVDILRERNDELAALETLDTGKPLAETRSVDIVTGADVLEYYAGLVPAIEGEQIP 129          
The following BLAST results are available for this feature:
BLAST of FC920741 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 256
Match NameE-valueIdentityDescription
BETB_YERPS5.280e-1837.50Betaine aldehyde dehydrogenase OS=Yersinia pseudot... [more]
BETB_YERPP5.280e-1837.50Betaine aldehyde dehydrogenase OS=Yersinia pestis ... [more]
BETB_YERPN5.280e-1837.50Betaine aldehyde dehydrogenase OS=Yersinia pestis ... [more]
BETB_YERPE5.280e-1837.50Betaine aldehyde dehydrogenase OS=Yersinia pestis ... [more]
BETB_YERPB5.280e-1837.50Betaine aldehyde dehydrogenase OS=Yersinia pseudot... [more]
BETB_YERPA5.280e-1837.50Betaine aldehyde dehydrogenase OS=Yersinia pestis ... [more]
BETB_STRMK5.280e-1840.46Betaine aldehyde dehydrogenase OS=Stenotrophomonas... [more]
BETB_PSEMY5.280e-1840.50Betaine aldehyde dehydrogenase OS=Pseudomonas mend... [more]
BETB_PSEAE6.896e-1838.71Betaine aldehyde dehydrogenase OS=Pseudomonas aeru... [more]
BETB_PSEAB6.896e-1838.71Betaine aldehyde dehydrogenase OS=Pseudomonas aeru... [more]

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Properties
Property NameValue
Genbank descriptionC32012E02EF RVDevelop1 Citrus clementina cDNA clone C32012E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920741 ID=FC920741; Name=FC920741; organism=Citrus clementina; type=EST; length=688bp
TGCAGTTGCAAGCTTCACTTGCTAGGACAAAAGTTGCAGAGAGAGAGAGA
GAGAGAGAGAGAGAAGAGTTGAATAGGTCGCTTCTTCGCTTTGGCTATGG
CAGCTGCTCGCAGAATCTCCACCTTGCTGTCTCGTTCTTTCCCTTCTGCT
TCTCCTTCTCTGCTTCGCTCTCTTGGTAGGGAGTCTAGCAGGGCAAGAGG
CATCAGCAGGTTTAGCACAGCTGCTGTTGTTGAAGAGCCAATCATTCCAC
CTGTTCAAATTAGTTACACTAAGAATTTAATAAATGGCCAATTTGTAGAC
GCAGCATCAGGCAAAACATTTCCGGTCTACGACCCTCGTACTGCTGAAGT
GATTGCTAATGTTGCTGAAGGAGATGCGGAAGATATTGACCGTGCAGTTG
CTACTGCTCGCAAGGCATTTGATGAGGGACCTTGGCCAAAGATGACCCCT
TATGAGAGGTCAAGGATTATGTTGCGGGCTGCTGACTTGATTGAGAAAAA
CATGGAGGAGCTGGCAGCTTTGGAGACATGGAACAATGGAAAGCCCTATG
TACAATCTCTCNAATCTGAAGTACCAATGGTGGTTCGCCTGTTGCACTAT
TATGCTGGATGGGCTGATAAAATCCATGGACTAACCGTCCCTGGTGATGG
AAATACCATATTCAACTTTACATGAACCATTGGCGTTG
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