FC920746

Overview
NameFC920746
Unique NameFC920746
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920746 vs. ExPASy Swiss-Prot
Match: ILVE_STAAC (Probable branched-chain-amino-acid aminotransferase OS=Staphylococcus aureus (strain COL) GN=ilvE PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.605e-15
Identity = 47/116 (40.52%), Postives = 66/116 (56.90%), Query Frame = 2
Query:  353 LGFGFCPTDYMYVMKCGRDGNFSKGELQRFGNIELSPSSGVLNYGQGLFEGLKAYRKQDGNILLFRPEENAMRMQVGAERMCMPSPSVEQFVEAVKATVLANKRWIPP-SGKGPYI 697
            LGFG   TDYM       D  +   ++  +G IE+SP++  ++YGQ +FEGLKAY K+DG + LFRPEEN  R+     R+ MP     + +E +K  V   + WIP   G+  YI
Sbjct:   22 LGFGKYFTDYMLSYDYDADKGWHDLKIVPYGPIEISPAAQGVHYGQSVFEGLKAY-KRDGEVALFRPEENFKRLNNSLARLEMPQVDEAELLEGLKQLVDIERDWIPEGEGQSLYI 136          
BLAST of FC920746 vs. ExPASy Swiss-Prot
Match: BCAT_NEMVE (Branched-chain-amino-acid aminotransferase OS=Nematostella vectensis GN=v1g246094 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.321e-15
Identity = 39/113 (34.51%), Postives = 63/113 (55.75%), Query Frame = 2
Query:  341 DWDNLGFGFCPTDYMYVMKCGRDGNFSKGELQRFGNIELSPSSGVLNYGQGLFEGLKAYRKQDGNILLFRPEENAMRMQVGAERMCMPSPSVEQFVEAVKATVLANKRWIPPS 679
            D + L FG   TD+  ++K   +  +   ++  +GN+ L P++  L+YG   FEG+KAYR  DG I +FRP  N  RM   A R C+P+ +  + VE ++  +   + W+P S
Sbjct:   61 DPNTLVFGKEFTDHALILKWSDEDGWDNPQIIPYGNLSLPPAASALHYGLECFEGMKAYRGDDGKIRMFRPLMNMKRMNNSAARACLPTFNSGEMVECIRKLIHLEREWVPHS 173          
BLAST of FC920746 vs. ExPASy Swiss-Prot
Match: ILVE_STAEQ (Probable branched-chain-amino-acid aminotransferase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=ilvE PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.631e-14
Identity = 45/120 (37.50%), Postives = 67/120 (55.83%), Query Frame = 2
Query:  341 DWDNLGFGFCPTDYMYVMKCGRDGNFSKGELQRFGNIELSPSSGVLNYGQGLFEGLKAYRKQDGNILLFRPEENAMRMQVGAERMCMPSPSVEQFVEAVKATVLANKRWIPP-SGKGPYI 697
            D  NLGFG   TDYM  +    D  +   ++  +   E+SP++  L+YGQ +FEGLKAY K +G ++LFRP++N  R+     R+ MP    E  +E +K  V   + W+P   G+  YI
Sbjct:   18 DTANLGFGQYFTDYMLSVDYDADQGWHDMKIVPYAPFEISPAAQGLHYGQAVFEGLKAY-KHNGEVVLFRPDQNFKRINNSLARLEMPEVDEEALLEGLKQLVDVERDWVPEGEGQSLYI 136          
BLAST of FC920746 vs. ExPASy Swiss-Prot
Match: ILVE_STAES (Probable branched-chain-amino-acid aminotransferase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=ilvE PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.130e-14
Identity = 44/120 (36.67%), Postives = 67/120 (55.83%), Query Frame = 2
Query:  341 DWDNLGFGFCPTDYMYVMKCGRDGNFSKGELQRFGNIELSPSSGVLNYGQGLFEGLKAYRKQDGNILLFRPEENAMRMQVGAERMCMPSPSVEQFVEAVKATVLANKRWIPP-SGKGPYI 697
            D  NLGFG   TDYM  +    D  +   ++  +   E+SP++  L+YGQ +FEGLKAY K +G ++LFRP++N  R+     R+ MP    E  +E +K  +   + W+P   G+  YI
Sbjct:   18 DTANLGFGQYFTDYMLSVDYDADQGWHDMKIVPYAPFEISPAAQGLHYGQAVFEGLKAY-KHNGEVVLFRPDQNFKRINNSLARLEMPEVDEEALLEGLKQLIDVERDWVPEGEGQSLYI 136          
BLAST of FC920746 vs. ExPASy Swiss-Prot
Match: BCAT_DICDI (Branched-chain-amino-acid aminotransferase OS=Dictyostelium discoideum GN=bcaA PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.745e-14
Identity = 40/116 (34.48%), Postives = 67/116 (57.76%), Query Frame = 2
Query:  341 DWDNLGFGFCPTDYMYVMKCGRDGNFSKGELQRFGNIELSPSSGVLNYGQGLFEGLKAYRKQDGNILLFRPEENAMRMQVGAERMCMPSPSVEQFVEAVKATVLANKRWIPPSGKG 688
            D   L FG   +D+M  ++  ++  +   ++  + N+ + PS+ VL+Y    FEG+KAY+  +G I LFRP++N  R    A+R+C+P  + E  +E +K   + +K WI P GKG
Sbjct:   35 DKTKLVFGKQFSDHMIEVQWTKEEGWGVPKISGYHNLSIPPSASVLHYALECFEGMKAYKDSNGKIRLFRPDQNMNRFLNSAKRICLPEFNKEAVIELIKKLCVLDKDWI-PEGKG 149          
BLAST of FC920746 vs. ExPASy Swiss-Prot
Match: ILVE_MYCLE (Probable branched-chain-amino-acid aminotransferase OS=Mycobacterium leprae GN=ilvE PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.197e-14
Identity = 40/109 (36.70%), Postives = 63/109 (57.80%), Query Frame = 2
Query:  356 GFGFCPTDYMYVMKCGRDGNFSKGELQRFGNIELSPSSGVLNYGQGLFEGLKAYRKQDGNILLFRPEENAMRMQVGAERMCMPSPSVEQFVEAVKATVLANKRWIPPSG 682
            GFG   TD+M  +       +    +  +G I+L PS+ VL+Y Q +FEGLKAYR  DG+I+ FRP+ NA R++  A R+ +P    E F++++   +  +  W+P  G
Sbjct:   30 GFGKYHTDHMVSIDYIDGRGWHDARVIPYGPIQLDPSAIVLHYAQEVFEGLKAYRWADGSIVSFRPDANAARLRSSARRIAIPELPDELFIDSLCQLIAVDNAWVPRVG 138          
BLAST of FC920746 vs. ExPASy Swiss-Prot
Match: BCAT1_MOUSE (Branched-chain-amino-acid aminotransferase, cytosolic OS=Mus musculus GN=Bcat1 PE=2 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 2.355e-13
Identity = 40/113 (35.40%), Postives = 63/113 (55.75%), Query Frame = 2
Query:  341 DWDNLGFGFCPTDYMYVMKCGRDGNFSKGELQRFGNIELSPSSGVLNYGQGLFEGLKAYRKQDGNILLFRPEENAMRMQVGAERMCMPSPSVEQFVEAVKATVLANKRWIPPS 679
            D D+L FG   TD+M  ++      + K  ++ FGN+ + P++ VL+Y   LFEGLKA+R  D  I LFRP+ N  RM   A R  +P    E+ ++ +   +  ++ W+P S
Sbjct:   43 DPDSLVFGATFTDHMLTVEWSSASGWEKPHIKPFGNLPIHPAASVLHYAVELFEGLKAFRGVDNKIRLFRPDLNMDRMCRSAVRTTLPMFDKEELLKCILQLLQIDQEWVPYS 155          
BLAST of FC920746 vs. ExPASy Swiss-Prot
Match: BCAT1_SHEEP (Branched-chain-amino-acid aminotransferase, cytosolic OS=Ovis aries GN=BCAT1 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.246e-13
Identity = 43/135 (31.85%), Postives = 66/135 (48.89%), Query Frame = 2
Query:  275 PFKLFSVSSHTLSNETIQLADIDWDNLGFGFCPTDYMYVMKCGRDGNFSKGELQRFGNIELSPSSGVLNYGQGLFEGLKAYRKQDGNILLFRPEENAMRMQVGAERMCMPSPSVEQFVEAVKATVLANKRWIPPS 679
            P + F      ++  TI     D   L FG   TD+M  ++   +  + K  ++   N+ L P S  L+Y   LFEGLKA+R  D  I LFRP  N  RM   A R  +P+   ++ +E ++  V  ++ W+P S
Sbjct:   20 PVETFKAEDLIITRATILKEKPDPSTLVFGTVFTDHMLTVEWSLELGWEKPRIKPLQNLSLHPGSSALHYAVELFEGLKAFRGVDNKIRLFRPNLNMDRMYRSAMRATLPAFDKKELLECIQQLVKLDEEWVPYS 154          
BLAST of FC920746 vs. ExPASy Swiss-Prot
Match: BCA2_YEAST (Branched-chain-amino-acid aminotransferase, cytosolic OS=Saccharomyces cerevisiae GN=BAT2 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.949e-13
Identity = 38/112 (33.93%), Postives = 62/112 (55.36%), Query Frame = 2
Query:  353 LGFGFCPTDYMYVMKCGRDGNFSKGELQRFGNIELSPSSGVLNYGQGLFEGLKAYRKQDGNILLFRPEENAMRMQVGAERMCMPSPSVEQFVEAVKATVLANKRWIPPSGKG 688
            L FG   TD+M   +   +  +   E++ + N+ L PS+ V +Y   LFEG+KAYR  D  I +FRP+ N  RM   A+R+C+P+   E+ +  +   ++   + + P GKG
Sbjct:   28 LVFGKSFTDHMLTAEWTAEKGWGTPEIKPYQNLSLDPSAVVFHYAFELFEGMKAYRTVDNKITMFRPDMNMKRMNKSAQRICLPTFDPEELITLI-GKLIQQDKCLVPEGKG 138          
BLAST of FC920746 vs. ExPASy Swiss-Prot
Match: BCAT1_HUMAN (Branched-chain-amino-acid aminotransferase, cytosolic OS=Homo sapiens GN=BCAT1 PE=1 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 1.169e-12
Identity = 43/131 (32.82%), Postives = 65/131 (49.62%), Query Frame = 2
Query:  287 FSVSSHTLSNETIQLADIDWDNLGFGFCPTDYMYVMKCGRDGNFSKGELQRFGNIELSPSSGVLNYGQGLFEGLKAYRKQDGNILLFRPEENAMRMQVGAERMCMPSPSVEQFVEAVKATVLANKRWIPPS 679
            F      ++  TI     D +NL FG   TD+M  ++   +  + K  ++   N+ L P S  L+Y   LFEGLKA+R  D  I LF+P  N  RM   A R  +P    E+ +E ++  V  ++ W+P S
Sbjct:   25 FKAKDLIVTPATILKEKPDPNNLVFGTVFTDHMLTVEWSSEFGWEKPHIKPLQNLSLHPGSSALHYAVELFEGLKAFRGVDNKIRLFQPNLNMDRMYRSAVRATLPVFDKEELLECIQQLVKLDQEWVPYS 155          
The following BLAST results are available for this feature:
BLAST of FC920746 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
ILVE_STAAC5.605e-1540.52Probable branched-chain-amino-acid aminotransferas... [more]
BCAT_NEMVE7.321e-1534.51Branched-chain-amino-acid aminotransferase OS=Nema... [more]
ILVE_STAEQ1.631e-1437.50Probable branched-chain-amino-acid aminotransferas... [more]
ILVE_STAES2.130e-1436.67Probable branched-chain-amino-acid aminotransferas... [more]
BCAT_DICDI4.745e-1434.48Branched-chain-amino-acid aminotransferase OS=Dict... [more]
ILVE_MYCLE6.197e-1436.70Probable branched-chain-amino-acid aminotransferas... [more]
BCAT1_MOUSE2.355e-1335.40Branched-chain-amino-acid aminotransferase, cytoso... [more]
BCAT1_SHEEP5.246e-1331.85Branched-chain-amino-acid aminotransferase, cytoso... [more]
BCA2_YEAST8.949e-1333.93Branched-chain-amino-acid aminotransferase, cytoso... [more]
BCAT1_HUMAN1.169e-1232.82Branched-chain-amino-acid aminotransferase, cytoso... [more]

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Properties
Property NameValue
Genbank descriptionC32012E09EF RVDevelop1 Citrus clementina cDNA clone C32012E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920746 ID=FC920746; Name=FC920746; organism=Citrus clementina; type=EST; length=698bp
GGAAGGACTTTAACAATAAAGGTCAAATCAGGAACCCAGCTTCCACAGAG
AAGGAGATATGGAGAGAAGCAGCAGCGCAGTAATGGCTGGCCTTCAGCCG
AATAGCCTAATCTGTCCTTTCGCTTCTTCACGTAATGGTTGTACGCTCTT
CCTCCCCATTCCCAATTCCTTCTCCTCCGCCGCCGGACAAAGCCGTCATT
GCCTTCCTCCCTTATCTCTCAAGCTTCAAAAGCAAACTGCTTTCACTCCT
TACCATGTGAACCAAACGGACTCTCCTTTCAAGCTTTTTTCCGTTTCATC
TCATACTCTCAGCAATGAAACGATTCAATTAGCCGACATAGATTGGGACA
ACCTTGGATTTGGGTTTTGTCCTACTGATTATATGTACGTCATGAAATGT
GGAAGAGATGGAAACTTCTCTAAAGGTGAATTACAGCGTTTTGGTAACAT
TGAGTTGAGTCCATCCTCTGGAGTCTTAAATTATGGCCAGGGATTATTCG
AAGGCCTGAAAGCCTACAGGAAACAAGATGGTAACATTCTTCTCTTTCGT
CCTGAGGAAAATGCAATGCGGATGCAGGTGGGTGCGGAGCGGATGTGCAT
GCCATCACCATCAGTTGAACAGTTTGTGGAAGCTGTTAAGGCTACTGTTT
TAGCAAACAAACGTTGGATCCCTCCTTCTGGTAAAGGTCCTTATATAT
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