FC920746

Overview
NameFC920746
Unique NameFC920746
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920746 vs. ExPASy Swiss-Prot
Match: BCAT2_RAT (Branched-chain-amino-acid aminotransferase, mitochondrial OS=Rattus norvegicus GN=Bcat2 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.526e-12
Identity = 36/105 (34.29%), Postives = 58/105 (55.24%), Query Frame = 2
Query:  359 FGFCPTDYMYVMKCGRDGNFSKGELQRFGNIELSPSSGVLNYGQGLFEGLKAYRKQDGNILLFRPEENAMRMQVGAERMCMPSPSVEQFVEAVKATVLANKRWIP 673
            FG   TD+M +++      +    +Q F N+ L P+   L+Y   LFEGLKAY+ +D  + LFRP  N  RM   A R+C+P    ++ +E ++  +  +K W+P
Sbjct:   57 FGKTFTDHMLMVEWNSKTGWGPPRIQPFQNLTLHPACSGLHYSLQLFEGLKAYKGRDKQVRLFRPWLNMDRMLRSARRLCLPDFDKQELLECIRQLIEVDKDWVP 161          
BLAST of FC920746 vs. ExPASy Swiss-Prot
Match: BCAT2_MOUSE (Branched-chain-amino-acid aminotransferase, mitochondrial OS=Mus musculus GN=Bcat2 PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.526e-12
Identity = 36/105 (34.29%), Postives = 57/105 (54.29%), Query Frame = 2
Query:  359 FGFCPTDYMYVMKCGRDGNFSKGELQRFGNIELSPSSGVLNYGQGLFEGLKAYRKQDGNILLFRPEENAMRMQVGAERMCMPSPSVEQFVEAVKATVLANKRWIP 673
            FG   TD+M +++      +    +Q F N+ L P+   L+Y   LFEGLKAY+  D  + LFRP  N  RM   A R+C+P    ++ +E ++  +  +K W+P
Sbjct:   57 FGKTFTDHMLMVEWNNKAGWGPPRIQPFQNLTLHPACSGLHYSLQLFEGLKAYKGGDQQVRLFRPWLNMDRMLRSARRLCLPDFDKQELLECIRQLIEVDKDWVP 161          
BLAST of FC920746 vs. ExPASy Swiss-Prot
Match: BCAT1_RAT (Branched-chain-amino-acid aminotransferase, cytosolic OS=Rattus norvegicus GN=Bcat1 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.994e-12
Identity = 39/113 (34.51%), Postives = 62/113 (54.87%), Query Frame = 2
Query:  341 DWDNLGFGFCPTDYMYVMKCGRDGNFSKGELQRFGNIELSPSSGVLNYGQGLFEGLKAYRKQDGNILLFRPEENAMRMQVGAERMCMPSPSVEQFVEAVKATVLANKRWIPPS 679
            D  +L FG   TD+M +++      + K  ++ F N+ + P++ VL+Y   LFEGLKA+R  D  I LFRP+ N  RM   A R  +P    E+ ++ V   +  ++ W+P S
Sbjct:   68 DPSSLVFGASFTDHMLMVEWTSKYGWDKPHIKPFENLSIHPAASVLHYAVELFEGLKAFRGVDNKIRLFRPDLNMKRMCRSAVRTTLPEFDKEELLQCVLQLIQLDREWVPYS 180          
BLAST of FC920746 vs. ExPASy Swiss-Prot
Match: BCA1_YEAST (Branched-chain-amino-acid aminotransferase, mitochondrial OS=Saccharomyces cerevisiae GN=BAT1 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.994e-12
Identity = 36/109 (33.03%), Postives = 58/109 (53.21%), Query Frame = 2
Query:  347 DNLGFGFCPTDYMYVMKCGRDGNFSKGELQRFGNIELSPSSGVLNYGQGLFEGLKAYRKQDGNILLFRPEENAMRMQVGAERMCMPSPSVEQFVEAVKATVLANKRWIP 673
            + L FG   TD+M  +       +    ++ +GN+ L PS+ V +Y   LFEGLKAYR     I +FRP++N  RM   A R+C+P+   E+ ++     +  +K  +P
Sbjct:   43 EELVFGQTFTDHMLTIPWSAKEGWGTPHIKPYGNLSLDPSACVFHYAFELFEGLKAYRTPQNTITMFRPDKNMARMNKSAARICLPTFESEELIKLTGKLIEQDKHLVP 151          
BLAST of FC920746 vs. ExPASy Swiss-Prot
Match: BCAT2_BOVIN (Branched-chain-amino-acid aminotransferase, mitochondrial OS=Bos taurus GN=BCAT2 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.401e-12
Identity = 36/107 (33.64%), Postives = 61/107 (57.01%), Query Frame = 2
Query:  359 FGFCPTDYMYVMKCGRDGNFSKGELQRFGNIELSPSSGVLNYGQGLFEGLKAYRKQDGNILLFRPEENAMRMQVGAERMCMPSPSVEQFVEAVKATVLANKRWIPPS 679
            FG   TD+M +++  ++  + +  +Q F N+ L P+   L+Y   LFEG+KA++  D  + LFRP  N  RM   A R+C+PS    + +E ++  V  ++ W+P S
Sbjct:   57 FGKTFTDHMLMVEWNQEKGWGQPRIQPFQNLTLHPACSALHYSLQLFEGMKAFKGGDQRVRLFRPWLNMERMLRSALRLCLPSFDKIELLECIRRLVEVDQDWVPGS 163          
BLAST of FC920746 vs. ExPASy Swiss-Prot
Match: BCAT2_PONAB (Branched-chain-amino-acid aminotransferase, mitochondrial OS=Pongo abelii GN=BCAT2 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.441e-12
Identity = 38/107 (35.51%), Postives = 62/107 (57.94%), Query Frame = 2
Query:  353 LGFGFCPTDYMYVMKCGRDGNFSKGELQRFGNIELSPSSGVLNYGQGLFEGLKAYRKQDGNILLFRPEENAMRMQVGAERMCMPSPSVEQFVEAVKATVLANKRWIP 673
            L FG   TD+M +++   D  + +  +Q F N+ L P+S  L+Y   LFEG+KA++ +D  + LFRP  N  RM   A R+C+PS    + +E ++  +  +K W+P
Sbjct:   55 LVFGKTFTDHMLMVEWS-DKGWGQPRIQPFQNLTLHPASSSLHYSLQLFEGMKAFKGKDQQVRLFRPWLNMDRMLRSAMRLCLPSFDKLELLECIRRLIEVDKDWVP 160          
BLAST of FC920746 vs. ExPASy Swiss-Prot
Match: BCAT2_HUMAN (Branched-chain-amino-acid aminotransferase, mitochondrial OS=Homo sapiens GN=BCAT2 PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 4.441e-12
Identity = 38/107 (35.51%), Postives = 62/107 (57.94%), Query Frame = 2
Query:  353 LGFGFCPTDYMYVMKCGRDGNFSKGELQRFGNIELSPSSGVLNYGQGLFEGLKAYRKQDGNILLFRPEENAMRMQVGAERMCMPSPSVEQFVEAVKATVLANKRWIP 673
            L FG   TD+M +++   D  + +  +Q F N+ L P+S  L+Y   LFEG+KA++ +D  + LFRP  N  RM   A R+C+PS    + +E ++  +  +K W+P
Sbjct:   55 LVFGKTFTDHMLMVEWN-DKGWGQPRIQPFQNLTLHPASSSLHYSLQLFEGMKAFKGKDQQVRLFRPWLNMDRMLRSAMRLCLPSFDKLELLECIRRLIEVDKDWVP 160          
BLAST of FC920746 vs. ExPASy Swiss-Prot
Match: BCAT_CAEEL (Branched-chain-amino-acid aminotransferase, cytosolic OS=Caenorhabditis elegans GN=bcat-1 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 7.576e-12
Identity = 36/114 (31.58%), Postives = 58/114 (50.88%), Query Frame = 2
Query:  338 IDWDNLGFGFCPTDYMYVMKCGRDGNFSKGELQRFGNIELSPSSGVLNYGQGLFEGLKAYRKQDGNILLFRPEENAMRMQVGAERMCMPSPSVEQFVEAVKATVLANKRWIPPS 679
            +D   L FG    DYM       +  +   +++  G +++ P + VL+Y   LFEG+KAYR  D  I +FRPE N  RM+  A R  +P    E+ +  +   +  ++ W+P S
Sbjct:   65 LDPTKLKFGHTYADYMMTCDWDAERGWHHPKIEPIGELKIHPGAKVLHYASELFEGMKAYRGIDNKIRMFRPEMNMARMKRTALRAALPDFDSEEMINVLTELLRLDQEWVPNS 178          
BLAST of FC920746 vs. ExPASy Swiss-Prot
Match: BCAT_MONBE (Branched-chain-amino-acid aminotransferase OS=Monosiga brevicollis GN=37018 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.688e-11
Identity = 40/131 (30.53%), Postives = 68/131 (51.91%), Query Frame = 2
Query:  296 SSHTLSNETIQLADIDWDNLGFGFCPTDYMYVMKCGRDGNFSKGELQRFGNIELSPSSGVLNYGQGLFEGLKAYRKQDGNILLFRPEENAMRMQVGAERMCMPSPSVEQFVEAVKATVLANKRWIPPSGKG 688
            S  T+   T     ++   L FG   +D+M   K   +  ++   +  + N+ L+PSS VL+Y    FEG+KA+R  D  I LFRP  N  R+   + R+ +P    ++ ++ +   V+ +K WI P+G+G
Sbjct:   32 SKLTIETTTQPRERVEKTKLVFGHTFSDHMLKCKWDVNEGWAAPTISPYANLSLAPSSIVLHYAIECFEGMKAFRGDDDRIRLFRPNLNMDRLHRSSVRLALPDFDQDELLKCITELVIKDKDWI-PAGRG 161          
The following BLAST results are available for this feature:
BLAST of FC920746 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
BCAT2_RAT1.526e-1234.29Branched-chain-amino-acid aminotransferase, mitoch... [more]
BCAT2_MOUSE1.526e-1234.29Branched-chain-amino-acid aminotransferase, mitoch... [more]
BCAT1_RAT1.994e-1234.51Branched-chain-amino-acid aminotransferase, cytoso... [more]
BCA1_YEAST1.994e-1233.03Branched-chain-amino-acid aminotransferase, mitoch... [more]
BCAT2_BOVIN3.401e-1233.64Branched-chain-amino-acid aminotransferase, mitoch... [more]
BCAT2_PONAB4.441e-1235.51Branched-chain-amino-acid aminotransferase, mitoch... [more]
BCAT2_HUMAN4.441e-1235.51Branched-chain-amino-acid aminotransferase, mitoch... [more]
BCAT_CAEEL7.576e-1231.58Branched-chain-amino-acid aminotransferase, cytoso... [more]
BCAT_MONBE1.688e-1130.53Branched-chain-amino-acid aminotransferase OS=Mono... [more]

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Properties
Property NameValue
Genbank descriptionC32012E09EF RVDevelop1 Citrus clementina cDNA clone C32012E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920746 ID=FC920746; Name=FC920746; organism=Citrus clementina; type=EST; length=698bp
GGAAGGACTTTAACAATAAAGGTCAAATCAGGAACCCAGCTTCCACAGAG
AAGGAGATATGGAGAGAAGCAGCAGCGCAGTAATGGCTGGCCTTCAGCCG
AATAGCCTAATCTGTCCTTTCGCTTCTTCACGTAATGGTTGTACGCTCTT
CCTCCCCATTCCCAATTCCTTCTCCTCCGCCGCCGGACAAAGCCGTCATT
GCCTTCCTCCCTTATCTCTCAAGCTTCAAAAGCAAACTGCTTTCACTCCT
TACCATGTGAACCAAACGGACTCTCCTTTCAAGCTTTTTTCCGTTTCATC
TCATACTCTCAGCAATGAAACGATTCAATTAGCCGACATAGATTGGGACA
ACCTTGGATTTGGGTTTTGTCCTACTGATTATATGTACGTCATGAAATGT
GGAAGAGATGGAAACTTCTCTAAAGGTGAATTACAGCGTTTTGGTAACAT
TGAGTTGAGTCCATCCTCTGGAGTCTTAAATTATGGCCAGGGATTATTCG
AAGGCCTGAAAGCCTACAGGAAACAAGATGGTAACATTCTTCTCTTTCGT
CCTGAGGAAAATGCAATGCGGATGCAGGTGGGTGCGGAGCGGATGTGCAT
GCCATCACCATCAGTTGAACAGTTTGTGGAAGCTGTTAAGGCTACTGTTT
TAGCAAACAAACGTTGGATCCCTCCTTCTGGTAAAGGTCCTTATATAT
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