FC920748 | Citrus Genome Database

Overview


Name	FC920748
Unique Name	FC920748
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	692

Libraries


Library Name	Type
RVDevelop1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of FC920748 vs. ExPASy Swiss-Prot
Match: ARFJ_DICDI (ADP-ribosylation factor J OS=Dictyostelium discoideum GN=arrJ PE=3 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 1.719e-17
Identity = 24/62 (38.71%), Postives = 44/62 (70.97%), Query Frame = 3

Query:  423 EFDWYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDGSDLRRLDDCKMELDNLLKEEAIRG 608
            E+   ++ +WDVGGQ  IR  W++Y+  ++ +++VVD +D  R+D+ K E+DNLL ++ ++G
Sbjct:   65 EYKNLSMTVWDVGGQHKIRPLWKHYYHGSNAVIFVVDSTDRERMDEVKEEIDNLLIQDELKG 126

HSP 2 Score: 38.5058 bits (88), Expect = 1.719e-17
Identity = 16/36 (44.44%), Postives = 25/36 (69.44%), Query Frame = 2

Query:  197 GLDNSGKTTIVLKINGEDTSVISPTLGFNIKTITYQ 304
            GLD +GK+T++ K+   D     PT+GFN++TI Y+
Sbjct:   32 GLDGAGKSTLLYKLKLGDVVSTIPTIGFNVETIEYK 67

HSP 3 Score: 27.335 bits (59), Expect = 1.719e-17
Identity = 10/25 (40.00%), Postives = 16/25 (64.00%), Query Frame = 1

Query:  598 LSGASLLILANKQDINGALTPQRLL 672
            L G  +L+ ANKQD+N A+    ++
Sbjct:  124 LKGTQILVFANKQDMNNAMNTAEIV 148

[Close]

BLAST of FC920748 vs. ExPASy Swiss-Prot
Match: ARF1_PLAFA (ADP-ribosylation factor 1 OS=Plasmodium falciparum GN=ARF1 PE=2 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 2.895e-17
Identity = 28/61 (45.90%), Postives = 41/61 (67.21%), Query Frame = 3

Query:  423 EFDWYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDGSDLRRLDDCKMELDNLLKEEAIR 605
            EF   +  +WDVGGQ  IR  WR+Y+  TDGL++VVD +D  R+DD + EL  ++ EE ++
Sbjct:   57 EFRNISFTVWDVGGQDKIRPLWRHYYSNTDGLIFVVDSNDRERIDDAREELHRMINEEELK 117

HSP 2 Score: 37.7354 bits (86), Expect = 2.895e-17
Identity = 15/36 (41.67%), Postives = 25/36 (69.44%), Query Frame = 2

Query:  197 GLDNSGKTTIVLKINGEDTSVISPTLGFNIKTITYQ 304
            GLD +GKTTI+ K+   +     PT+GFN++T+ ++
Sbjct:   24 GLDAAGKTTILYKVKLGEVVTTIPTIGFNVETVEFR 59

HSP 3 Score: 23.0978 bits (48), Expect = 2.895e-17
Identity = 9/22 (40.91%), Postives = 15/22 (68.18%), Query Frame = 1

Query:  592 KRLSGASLLILANKQDINGALT 657
            + L  A +L+ ANKQD+  A++
Sbjct:  114 EELKDAIILVFANKQDLPNAMS 135

[Close]

BLAST of FC920748 vs. ExPASy Swiss-Prot
Match: ARF2_DROME (ADP-ribosylation factor 2 OS=Drosophila melanogaster GN=Arf102F PE=1 SV=2)

HSP 1 Score: 65.0846 bits (157), Expect = 2.895e-17
Identity = 27/61 (44.26%), Postives = 41/61 (67.21%), Query Frame = 3

Query:  423 EFDWYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDGSDLRRLDDCKMELDNLLKEEAIR 605
            E+      +WDVGGQ  IR  WR+YF+ T GL++VVD +D  R+ + + EL N+L+E+ +R
Sbjct:   57 EYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRITEAERELQNMLQEDELR 117

HSP 2 Score: 38.5058 bits (88), Expect = 2.895e-17
Identity = 16/36 (44.44%), Postives = 25/36 (69.44%), Query Frame = 2

Query:  197 GLDNSGKTTIVLKINGEDTSVISPTLGFNIKTITYQ 304
            GLD +GKTTI+ K+   +     PT+GFN++T+ Y+
Sbjct:   24 GLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYK 59

HSP 3 Score: 25.409 bits (54), Expect = 2.895e-17
Identity = 12/24 (50.00%), Postives = 15/24 (62.50%), Query Frame = 1

Query:  598 LSGASLLILANKQDINGALTPQRL 669
            L  A LL+ ANKQD+  A+T   L
Sbjct:  116 LRDAVLLVFANKQDLPNAMTAAEL 139

[Close]

BLAST of FC920748 vs. ExPASy Swiss-Prot
Match: ARFF_DICDI (ADP-ribosylation factor F OS=Dictyostelium discoideum GN=arrF PE=3 SV=1)

HSP 1 Score: 62.3882 bits (150), Expect = 4.837e-17
Identity = 23/57 (40.35%), Postives = 40/57 (70.18%), Query Frame = 3

Query:  423 EFDWYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDGSDLRRLDDCKMELDNLLKE 593
            E+   ++N+WD+GGQ  IR+ WR Y ++TD  ++VVD +D  R D+ K E+ N++++
Sbjct:   65 EYKNLSMNVWDIGGQNNIRALWRQYDQRTDVFIFVVDSTDRERFDEVKQEIKNIIEQ 121

HSP 2 Score: 36.1946 bits (82), Expect = 4.837e-17
Identity = 15/36 (41.67%), Postives = 24/36 (66.67%), Query Frame = 2

Query:  197 GLDNSGKTTIVLKINGEDTSVISPTLGFNIKTITYQ 304
            GLD +GK+T++ K+   D     PT+GFN++ I Y+
Sbjct:   32 GLDGAGKSTLLYKLKFGDVIRTIPTIGFNVEIIEYK 67

HSP 3 Score: 29.6462 bits (65), Expect = 4.837e-17
Identity = 14/24 (58.33%), Postives = 17/24 (70.83%), Query Frame = 1

Query:  601 SGASLLILANKQDINGALTPQRLL 672
            S ASLLI ANKQD+   +TP  L+
Sbjct:  127 SNASLLIFANKQDMLNPITPAELV 150

[Close]

BLAST of FC920748 vs. ExPASy Swiss-Prot
Match: ARF_DUGJA (ADP-ribosylation factor OS=Dugesia japonica PE=2 SV=3)

HSP 1 Score: 63.1586 bits (152), Expect = 8.133e-17
Identity = 26/61 (42.62%), Postives = 41/61 (67.21%), Query Frame = 3

Query:  423 EFDWYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDGSDLRRLDDCKMELDNLLKEEAIR 605
            E+   +  +WDVGGQ  IR  WR+YF+ T GL++VVD +D  R+++ + EL  +L E+ +R
Sbjct:   57 EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLNEDELR 117

HSP 2 Score: 38.5058 bits (88), Expect = 8.133e-17
Identity = 16/36 (44.44%), Postives = 25/36 (69.44%), Query Frame = 2

Query:  197 GLDNSGKTTIVLKINGEDTSVISPTLGFNIKTITYQ 304
            GLD +GKTTI+ K+   +     PT+GFN++T+ Y+
Sbjct:   24 GLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYK 59

HSP 3 Score: 25.7942 bits (55), Expect = 8.133e-17
Identity = 11/24 (45.83%), Postives = 15/24 (62.50%), Query Frame = 1

Query:  598 LSGASLLILANKQDINGALTPQRL 669
            L  A LL+ ANKQD+  A+ P  +
Sbjct:  116 LRDAVLLVFANKQDLPNAMNPAEI 139

[Close]

BLAST of FC920748 vs. ExPASy Swiss-Prot
Match: ARF_GIALA (ADP-ribosylation factor OS=Giardia lamblia PE=3 SV=3)

HSP 1 Score: 64.6994 bits (156), Expect = 1.049e-16
Identity = 28/63 (44.44%), Postives = 43/63 (68.25%), Query Frame = 3

Query:  423 EFDWYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDGSDL--RRLDDCKMELDNLLKEEAIR 605
            E+      +WDVGGQ +IR  WR+Y++ TD L++V+D +DL  +R++D K EL  LL E+ +R
Sbjct:   57 EYKNINFTVWDVGGQDSIRPLWRHYYQNTDALIYVIDSADLEPKRIEDAKNELHTLLGEDELR 119

HSP 2 Score: 38.1206 bits (87), Expect = 1.049e-16
Identity = 16/36 (44.44%), Postives = 25/36 (69.44%), Query Frame = 2

Query:  197 GLDNSGKTTIVLKINGEDTSVISPTLGFNIKTITYQ 304
            GLD +GKTTI+ K+   +     PT+GFN++T+ Y+
Sbjct:   24 GLDAAGKTTILYKLMLGEVVTTVPTIGFNVETVEYK 59

HSP 3 Score: 24.2534 bits (51), Expect = 1.049e-16
Identity = 11/27 (40.74%), Postives = 17/27 (62.96%), Query Frame = 1

Query:  577 TIF*RKRLSGASLLILANKQDINGALT 657
            T+     L  A+LL+ ANKQD+  A++
Sbjct:  111 TLLGEDELRDAALLVFANKQDLPKAMS 137

[Close]

BLAST of FC920748 vs. ExPASy Swiss-Prot
Match: ARF1_PLAFO (ADP-ribosylation factor 1 OS=Plasmodium falciparum (isolate NF54) GN=ARF1 PE=2 SV=2)

HSP 1 Score: 65.4698 bits (158), Expect = 1.769e-16
Identity = 27/61 (44.26%), Postives = 40/61 (65.57%), Query Frame = 3

Query:  423 EFDWYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDGSDLRRLDDCKMELDNLLKEEAIR 605
            EF   +  +WDVGGQ  IR  WR+Y+  TDGL++VVD +D  R+DD +  L  ++ EE ++
Sbjct:   57 EFRNISFTVWDVGGQDKIRPLWRHYYSNTDGLIFVVDSNDRERIDDAREGLHRMINEEELK 117

HSP 2 Score: 37.7354 bits (86), Expect = 1.769e-16
Identity = 15/36 (41.67%), Postives = 25/36 (69.44%), Query Frame = 2

Query:  197 GLDNSGKTTIVLKINGEDTSVISPTLGFNIKTITYQ 304
            GLD +GKTTI+ K+   +     PT+GFN++T+ ++
Sbjct:   24 GLDAAGKTTILYKVKLGEVVTTIPTIGFNVETVEFR 59

HSP 3 Score: 23.0978 bits (48), Expect = 1.769e-16
Identity = 9/22 (40.91%), Postives = 15/22 (68.18%), Query Frame = 1

Query:  592 KRLSGASLLILANKQDINGALT 657
            + L  A +L+ ANKQD+  A++
Sbjct:  114 EELKDAIILVFANKQDLPNAMS 135

[Close]

BLAST of FC920748 vs. ExPASy Swiss-Prot
Match: ARF_AJECA (ADP-ribosylation factor OS=Ajellomyces capsulata GN=ARF PE=1 SV=3)

HSP 1 Score: 61.2326 bits (147), Expect = 2.287e-16
Identity = 26/64 (40.62%), Postives = 40/64 (62.50%), Query Frame = 3

Query:  423 EFDWYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDGSDLRRLDDCKMELDNLLKEEAIRGIL 614
            E+      +WDVGGQ  IR  WR+YF+ T G+++VVD +D  R+ + + EL  +L E+ +R  L
Sbjct:   57 EYKNIQFTVWDVGGQDKIRPLWRHYFQNTQGIIFVVDSNDRDRVVEAREELQRMLNEDELRDAL 120

HSP 2 Score: 38.5058 bits (88), Expect = 2.287e-16
Identity = 16/36 (44.44%), Postives = 25/36 (69.44%), Query Frame = 2

Query:  197 GLDNSGKTTIVLKINGEDTSVISPTLGFNIKTITYQ 304
            GLD +GKTTI+ K+   +     PT+GFN++T+ Y+
Sbjct:   24 GLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYK 59

HSP 3 Score: 26.1794 bits (56), Expect = 2.287e-16
Identity = 11/24 (45.83%), Postives = 16/24 (66.67%), Query Frame = 1

Query:  598 LSGASLLILANKQDINGALTPQRL 669
            L  A LL+ ANKQD+  A++P  +
Sbjct:  116 LRDALLLVFANKQDLPNAMSPAEI 139

[Close]

BLAST of FC920748 vs. ExPASy Swiss-Prot
Match: ARF_CRYNE (ADP-ribosylation factor OS=Cryptococcus neoformans GN=ARF PE=1 SV=3)

HSP 1 Score: 63.929 bits (154), Expect = 3.834e-16
Identity = 26/64 (40.62%), Postives = 41/64 (64.06%), Query Frame = 3

Query:  423 EFDWYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDGSDLRRLDDCKMELDNLLKEEAIRGIL 614
            E+   +  +WDVGGQ  IR  WR+YF+ T G+++VVD +D  R+ + + EL  +L E+ +R  L
Sbjct:   57 EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGIIFVVDSNDRERITEAREELQRMLSEDELRDAL 120

HSP 2 Score: 38.5058 bits (88), Expect = 3.834e-16
Identity = 16/36 (44.44%), Postives = 25/36 (69.44%), Query Frame = 2

Query:  197 GLDNSGKTTIVLKINGEDTSVISPTLGFNIKTITYQ 304
            GLD +GKTTI+ K+   +     PT+GFN++T+ Y+
Sbjct:   24 GLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYK 59

HSP 3 Score: 22.7126 bits (47), Expect = 3.834e-16
Identity = 10/19 (52.63%), Postives = 13/19 (68.42%), Query Frame = 1

Query:  598 LSGASLLILANKQDINGAL 654
            L  A LL+ ANKQD+  A+
Sbjct:  116 LRDALLLVFANKQDLPNAM 134

[Close]

BLAST of FC920748 vs. ExPASy Swiss-Prot
Match: ARF1_CATRO (ADP-ribosylation factor 1 OS=Catharanthus roseus GN=ARF1 PE=2 SV=3)

HSP 1 Score: 63.929 bits (154), Expect = 3.840e-16
Identity = 26/61 (42.62%), Postives = 41/61 (67.21%), Query Frame = 3

Query:  423 EFDWYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDGSDLRRLDDCKMELDNLLKEEAIR 605
            E+ + +  +WDVGGQ  IR  WR+YF+ T GL++VVD +D  R+ + + EL  +L E+ +R
Sbjct:   57 EYQYISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELR 117

HSP 2 Score: 38.5058 bits (88), Expect = 3.840e-16
Identity = 16/36 (44.44%), Postives = 25/36 (69.44%), Query Frame = 2

Query:  197 GLDNSGKTTIVLKINGEDTSVISPTLGFNIKTITYQ 304
            GLD +GKTTI+ ++   +     PT+GFN++T+ YQ
Sbjct:   24 GLDAAGKTTILYQLKLGEIVTTIPTIGFNVETVEYQ 59

HSP 3 Score: 22.7126 bits (47), Expect = 3.840e-16
Identity = 10/19 (52.63%), Postives = 13/19 (68.42%), Query Frame = 1

Query:  598 LSGASLLILANKQDINGAL 654
            L  A LL+ ANKQD+  A+
Sbjct:  116 LRDAVLLVFANKQDLPNAM 134

The following BLAST results are available for this feature:

BLAST of FC920748 vs. ExPASy Swiss-Prot

BLAST of FC920748 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87


Match Name	E-value	Identity	Description
ARFJ_DICDI	1.719e-17	38.71	ADP-ribosylation factor J OS=Dictyostelium discoid...	[more]
ARF1_PLAFA	2.895e-17	45.90	ADP-ribosylation factor 1 OS=Plasmodium falciparum...	[more]
ARF2_DROME	2.895e-17	44.26	ADP-ribosylation factor 2 OS=Drosophila melanogast...	[more]
ARFF_DICDI	4.837e-17	40.35	ADP-ribosylation factor F OS=Dictyostelium discoid...	[more]
ARF_DUGJA	8.133e-17	42.62	ADP-ribosylation factor OS=Dugesia japonica PE=2 S...	[more]
ARF_GIALA	1.049e-16	44.44	ADP-ribosylation factor OS=Giardia lamblia PE=3 SV...	[more]
ARF1_PLAFO	1.769e-16	44.26	ADP-ribosylation factor 1 OS=Plasmodium falciparum...	[more]
ARF_AJECA	2.287e-16	40.63	ADP-ribosylation factor OS=Ajellomyces capsulata G...	[more]
ARF_CRYNE	3.834e-16	40.63	ADP-ribosylation factor OS=Cryptococcus neoformans...	[more]
ARF1_CATRO	3.840e-16	42.62	ADP-ribosylation factor 1 OS=Catharanthus roseus G...	[more]

Pages

Properties


Property Name	Value
Genbank description	C32012E11EF RVDevelop1 Citrus clementina cDNA clone C32012E11, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC920748 ID=FC920748; Name=FC920748; organism=Citrus clementina; type=EST; length=692bp
GACGGCGCAGAGCACAGACGCACTCACTCACACACACCGCACGACGCCCC
CGCTGTCAACTCCGTTCAGGTACACCGGCGTTGCAGCTTCTTGTCGTTCC
AGTCTTCCAGCTGCTGACATCTTGAGCCGTTCACTTCCGATCCAGCTGCT
GCCGTCGCTGCCTCCTTCTTCGTTCGCCGTCGTCAGCCGCACAAGGGGTC
TTGATAATTCTGGGAAGACCACTATTGTTTTGAAGATAAACGGAGAAGAT
ACTAGCGTTATCAGTCCTACACTTGGATTCAATATCAAAACCATTACTTA
CCAAAAGTAAGAACTTTTTATTCCATGATTTAGGATCATTTTATGTCAGC
CAAAAATGAGAATTTGAAGTCTTTAAACGCTGTTTAGTTTTTAGTGCGAA
CATTTTGGTTCCGATATTTTTTGAATTTGACTGGTACACTTTAAACATAT
GGGATGTAGGAGGCCAAAGGACTATAAGATCATATTGGAGGAACTACTTT
GAGCAAACTGATGGTTTGGTGTGGGTGGTTGATGGTTCCGATCTTAGAAG
ACTGGATGATTGCAAAATGGAACTAGACAATCTTTTAAAGGAAGAGGCTA
TCAGGGGCATCCTTACTGATTCTAGCAAATAAGCAGGACATCAATGGTGC
TCTTACCCCACAGAGATTGCTAAAAGTCTGAACTTGGAAGCC