FC920748

Overview
NameFC920748
Unique NameFC920748
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length692
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC920748 vs. ExPASy Swiss-Prot
Match: ARF5_CHICK (ADP-ribosylation factor 5 OS=Gallus gallus GN=ARF5 PE=2 SV=2)

HSP 1 Score: 62.003 bits (149), Expect = 1.079e-15
Identity = 26/61 (42.62%), Postives = 39/61 (63.93%), Query Frame = 3 
Query:  423 EFDWYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDGSDLRRLDDCKMELDNLLKEEAIR 605
            E+      +WDVGGQ  IR  WR+YF+ T GL++VVD +D  R+ +   EL  +L+E+ +R
Sbjct:   57 EYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESAEELQKMLQEDELR 117

HSP 2 Score: 38.5058 bits (88), Expect = 1.079e-15
Identity = 16/36 (44.44%), Postives = 25/36 (69.44%), Query Frame = 2 
Query:  197 GLDNSGKTTIVLKINGEDTSVISPTLGFNIKTITYQ 304
            GLD +GKTTI+ K+   +     PT+GFN++T+ Y+
Sbjct:   24 GLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYK 59

HSP 3 Score: 23.0978 bits (48), Expect = 1.079e-15
Identity = 11/24 (45.83%), Postives = 14/24 (58.33%), Query Frame = 1 
Query:  598 LSGASLLILANKQDINGALTPQRL 669
            L  A LL+ ANKQD+  A+    L
Sbjct:  116 LRDAVLLVFANKQDMPNAMVVSEL 139
[Close]
BLAST of FC920748 vs. ExPASy Swiss-Prot
Match: ARF4_ARATH (Probable ADP-ribosylation factor At2g15310 OS=Arabidopsis thaliana GN=At2g15310 PE=2 SV=3)

HSP 1 Score: 63.1586 bits (152), Expect = 1.383e-15
Identity = 25/62 (40.32%), Postives = 37/62 (59.68%), Query Frame = 3 
Query:  423 EFDWYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDGSDLRRLDDCKMELDNLLKEEAIRG 608
            E+      +WD+GGQ  IR  WR+YF+   GL++VVD SD  RL + + EL  +L +  + G
Sbjct:   57 EYKGINFTVWDIGGQEKIRKLWRHYFQNAQGLIFVVDSSDSERLSEARNELHRILTDNELEG 118

HSP 2 Score: 40.4318 bits (93), Expect = 1.383e-15
Identity = 17/36 (47.22%), Postives = 25/36 (69.44%), Query Frame = 2 
Query:  197 GLDNSGKTTIVLKINGEDTSVISPTLGFNIKTITYQ 304
            GLD SGKTTI+ K+   +     PT+GFN++T+ Y+
Sbjct:   24 GLDGSGKTTILYKLKLGEVVTTVPTIGFNLETVEYK 59
[Close]
BLAST of FC920748 vs. ExPASy Swiss-Prot
Match: ARF1_SOLTU (ADP-ribosylation factor 1 OS=Solanum tuberosum PE=2 SV=2)

HSP 1 Score: 62.003 bits (149), Expect = 1.385e-15
Identity = 26/61 (42.62%), Postives = 41/61 (67.21%), Query Frame = 3 
Query:  423 EFDWYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDGSDLRRLDDCKMELDNLLKEEAIR 605
            E+   +  +WDVGGQ  IR  WR+YF+ T GL++VVD +D  R+++ + EL  +L E+ +R
Sbjct:   57 EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVNEAREELMRMLAEDELR 117

HSP 2 Score: 38.5058 bits (88), Expect = 1.385e-15
Identity = 16/36 (44.44%), Postives = 25/36 (69.44%), Query Frame = 2 
Query:  197 GLDNSGKTTIVLKINGEDTSVISPTLGFNIKTITYQ 304
            GLD +GKTTI+ K+   +     PT+GFN++T+ Y+
Sbjct:   24 GLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYK 59

HSP 3 Score: 22.7126 bits (47), Expect = 1.385e-15
Identity = 10/19 (52.63%), Postives = 13/19 (68.42%), Query Frame = 1 
Query:  598 LSGASLLILANKQDINGAL 654
            L  A LL+ ANKQD+  A+
Sbjct:  116 LRDAVLLVFANKQDLPNAM 134
[Close]
BLAST of FC920748 vs. ExPASy Swiss-Prot
Match: ARL1_CAEEL (ADP-ribosylation factor-like protein 1 OS=Caenorhabditis elegans GN=arl-1 PE=2 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 1.390e-15
Identity = 34/94 (36.17%), Postives = 55/94 (58.51%), Query Frame = 3 
Query:  423 EFDWYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDGSDLRRLDDCKMELDNLLKEEAIRG----ILTDSSK*AGHQWCSYPTEIAKSLNLEA 692
            E+      +WD+GGQ +IR YWR Y+  TD +++VVD +D  R+   + EL  +L+E+ ++G    +L +    AG   C   TE+ K+L L+A
Sbjct:   56 EYKNLKFQVWDLGGQTSIRPYWRCYYANTDAIIYVVDSADRDRVGISRQELATMLQEDELQGAVLAVLANKQDIAG---CLTETEVYKALGLDA 146

HSP 2 Score: 36.5798 bits (83), Expect = 1.390e-15
Identity = 14/36 (38.89%), Postives = 24/36 (66.67%), Query Frame = 2 
Query:  197 GLDNSGKTTIVLKINGEDTSVISPTLGFNIKTITYQ 304
            GLD +GKTTI+ ++   +     PT+GFN++ + Y+
Sbjct:   23 GLDGAGKTTILYRLQVGEVVTTIPTIGFNVEQVEYK 58
[Close]
BLAST of FC920748 vs. ExPASy Swiss-Prot
Match: ARF2_ORYSJ (ADP-ribosylation factor 2 OS=Oryza sativa subsp. japonica GN=ARF PE=2 SV=2)

HSP 1 Score: 62.003 bits (149), Expect = 1.396e-15
Identity = 26/61 (42.62%), Postives = 40/61 (65.57%), Query Frame = 3 
Query:  423 EFDWYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDGSDLRRLDDCKMELDNLLKEEAIR 605
            E+   +  +WDVGGQ  IR  WR+YF+ T GL++VVD +D  R+ + + EL  +L E+ +R
Sbjct:   57 EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVVEARDELHRMLNEDELR 117

HSP 2 Score: 38.5058 bits (88), Expect = 1.396e-15
Identity = 16/36 (44.44%), Postives = 25/36 (69.44%), Query Frame = 2 
Query:  197 GLDNSGKTTIVLKINGEDTSVISPTLGFNIKTITYQ 304
            GLD +GKTTI+ K+   +     PT+GFN++T+ Y+
Sbjct:   24 GLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYK 59

HSP 3 Score: 22.7126 bits (47), Expect = 1.396e-15
Identity = 10/19 (52.63%), Postives = 13/19 (68.42%), Query Frame = 1 
Query:  598 LSGASLLILANKQDINGAL 654
            L  A LL+ ANKQD+  A+
Sbjct:  116 LRDAVLLVFANKQDLPNAM 134
[Close]
BLAST of FC920748 vs. ExPASy Swiss-Prot
Match: ARF1_SALBA (ADP-ribosylation factor 1 OS=Salix bakko GN=ARF1 PE=2 SV=3)

HSP 1 Score: 62.003 bits (149), Expect = 1.396e-15
Identity = 26/61 (42.62%), Postives = 40/61 (65.57%), Query Frame = 3 
Query:  423 EFDWYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDGSDLRRLDDCKMELDNLLKEEAIR 605
            E+   +  +WDVGGQ  IR  WR+YF+ T GL++VVD +D  R+ + + EL  +L E+ +R
Sbjct:   57 EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVGEARDELHRMLNEDELR 117

HSP 2 Score: 38.5058 bits (88), Expect = 1.396e-15
Identity = 16/36 (44.44%), Postives = 25/36 (69.44%), Query Frame = 2 
Query:  197 GLDNSGKTTIVLKINGEDTSVISPTLGFNIKTITYQ 304
            GLD +GKTTI+ K+   +     PT+GFN++T+ Y+
Sbjct:   24 GLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYK 59

HSP 3 Score: 22.7126 bits (47), Expect = 1.396e-15
Identity = 10/19 (52.63%), Postives = 13/19 (68.42%), Query Frame = 1 
Query:  598 LSGASLLILANKQDINGAL 654
            L  A LL+ ANKQD+  A+
Sbjct:  116 LRDAVLLVFANKQDLPNAM 134
[Close]
BLAST of FC920748 vs. ExPASy Swiss-Prot
Match: ARF1_ORYSJ (ADP-ribosylation factor 1 OS=Oryza sativa subsp. japonica GN=Os01g0813400 PE=2 SV=3)

HSP 1 Score: 62.003 bits (149), Expect = 1.396e-15
Identity = 26/61 (42.62%), Postives = 40/61 (65.57%), Query Frame = 3 
Query:  423 EFDWYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDGSDLRRLDDCKMELDNLLKEEAIR 605
            E+   +  +WDVGGQ  IR  WR+YF+ T GL++VVD +D  R+ + + EL  +L E+ +R
Sbjct:   57 EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVVEARDELHRMLNEDELR 117

HSP 2 Score: 38.5058 bits (88), Expect = 1.396e-15
Identity = 16/36 (44.44%), Postives = 25/36 (69.44%), Query Frame = 2 
Query:  197 GLDNSGKTTIVLKINGEDTSVISPTLGFNIKTITYQ 304
            GLD +GKTTI+ K+   +     PT+GFN++T+ Y+
Sbjct:   24 GLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYK 59

HSP 3 Score: 22.7126 bits (47), Expect = 1.396e-15
Identity = 10/19 (52.63%), Postives = 13/19 (68.42%), Query Frame = 1 
Query:  598 LSGASLLILANKQDINGAL 654
            L  A LL+ ANKQD+  A+
Sbjct:  116 LRDAVLLVFANKQDLPNAM 134
[Close]
BLAST of FC920748 vs. ExPASy Swiss-Prot
Match: ARF1_CHLRE (ADP-ribosylation factor 1 OS=Chlamydomonas reinhardtii GN=ARF1 PE=2 SV=2)

HSP 1 Score: 62.003 bits (149), Expect = 1.396e-15
Identity = 26/61 (42.62%), Postives = 40/61 (65.57%), Query Frame = 3 
Query:  423 EFDWYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDGSDLRRLDDCKMELDNLLKEEAIR 605
            E+   +  +WDVGGQ  IR  WR+YF+ T GL++VVD +D  R+ + + EL  +L E+ +R
Sbjct:   57 EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVVEARDELHRMLNEDELR 117

HSP 2 Score: 38.5058 bits (88), Expect = 1.396e-15
Identity = 16/36 (44.44%), Postives = 25/36 (69.44%), Query Frame = 2 
Query:  197 GLDNSGKTTIVLKINGEDTSVISPTLGFNIKTITYQ 304
            GLD +GKTTI+ K+   +     PT+GFN++T+ Y+
Sbjct:   24 GLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYK 59

HSP 3 Score: 22.7126 bits (47), Expect = 1.396e-15
Identity = 10/19 (52.63%), Postives = 13/19 (68.42%), Query Frame = 1 
Query:  598 LSGASLLILANKQDINGAL 654
            L  A LL+ ANKQD+  A+
Sbjct:  116 LRDAVLLVFANKQDLPNAM 134
[Close]
BLAST of FC920748 vs. ExPASy Swiss-Prot
Match: ARF1_DAUCA (ADP-ribosylation factor 1 OS=Daucus carota GN=ARF1 PE=2 SV=2)

HSP 1 Score: 61.2326 bits (147), Expect = 1.396e-15
Identity = 26/61 (42.62%), Postives = 40/61 (65.57%), Query Frame = 3 
Query:  423 EFDWYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDGSDLRRLDDCKMELDNLLKEEAIR 605
            E+   +  +WDVGGQ  IR  WR+YF+ T GL++VVD +D  R+ + + EL  +L E+ +R
Sbjct:   57 EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELR 117

HSP 2 Score: 38.5058 bits (88), Expect = 1.396e-15
Identity = 16/36 (44.44%), Postives = 25/36 (69.44%), Query Frame = 2 
Query:  197 GLDNSGKTTIVLKINGEDTSVISPTLGFNIKTITYQ 304
            GLD +GKTTI+ K+   +     PT+GFN++T+ Y+
Sbjct:   24 GLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYK 59

HSP 3 Score: 23.483 bits (49), Expect = 1.396e-15
Identity = 10/25 (40.00%), Postives = 15/25 (60.00%), Query Frame = 1 
Query:  598 LSGASLLILANKQDINGALTPQRLL 672
            L  A LL+ ANKQD+  A+    ++
Sbjct:  116 LRDAVLLVFANKQDLPNAMNAAEII 140
[Close]
BLAST of FC920748 vs. ExPASy Swiss-Prot
Match: ARF_NEUCR (ADP-ribosylation factor OS=Neurospora crassa GN=NCU08340 PE=3 SV=3)

HSP 1 Score: 61.2326 bits (147), Expect = 1.802e-15
Identity = 26/64 (40.62%), Postives = 40/64 (62.50%), Query Frame = 3 
Query:  423 EFDWYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDGSDLRRLDDCKMELDNLLKEEAIRGIL 614
            E+      +WDVGGQ  IR  WR+YF+ T G+++VVD +D  R+ + + EL  +L E+ +R  L
Sbjct:   60 EYKNIQFTVWDVGGQDKIRPLWRHYFQNTQGIIFVVDSNDRDRVVEAREELQRMLNEDELRDAL 123

HSP 2 Score: 38.891 bits (89), Expect = 1.802e-15
Identity = 16/36 (44.44%), Postives = 25/36 (69.44%), Query Frame = 2 
Query:  197 GLDNSGKTTIVLKINGEDTSVISPTLGFNIKTITYQ 304
            GLD +GKTTI+ K+   +     PT+GFN++T+ Y+
Sbjct:   27 GLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYK 62

HSP 3 Score: 22.7126 bits (47), Expect = 1.802e-15
Identity = 10/19 (52.63%), Postives = 13/19 (68.42%), Query Frame = 1 
Query:  598 LSGASLLILANKQDINGAL 654
            L  A LL+ ANKQD+  A+
Sbjct:  119 LRDALLLVFANKQDLPNAM 137
The following BLAST results are available for this feature:
BLAST of FC920748 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
ARF5_CHICK1.079e-1542.62ADP-ribosylation factor 5 OS=Gallus gallus GN=ARF5... [more]
ARF4_ARATH1.383e-1540.32Probable ADP-ribosylation factor At2g15310 OS=Arab... [more]
ARF1_SOLTU1.385e-1542.62ADP-ribosylation factor 1 OS=Solanum tuberosum PE=... [more]
ARL1_CAEEL1.390e-1536.17ADP-ribosylation factor-like protein 1 OS=Caenorha... [more]
ARF2_ORYSJ1.396e-1542.62ADP-ribosylation factor 2 OS=Oryza sativa subsp. j... [more]
ARF1_SALBA1.396e-1542.62ADP-ribosylation factor 1 OS=Salix bakko GN=ARF1 P... [more]
ARF1_ORYSJ1.396e-1542.62ADP-ribosylation factor 1 OS=Oryza sativa subsp. j... [more]
ARF1_CHLRE1.396e-1542.62ADP-ribosylation factor 1 OS=Chlamydomonas reinhar... [more]
ARF1_DAUCA1.396e-1542.62ADP-ribosylation factor 1 OS=Daucus carota GN=ARF1... [more]
ARF_NEUCR1.802e-1540.63ADP-ribosylation factor OS=Neurospora crassa GN=NC... [more]

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Properties
Property NameValue
Genbank descriptionC32012E11EF RVDevelop1 Citrus clementina cDNA clone C32012E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920748 ID=FC920748; Name=FC920748; organism=Citrus clementina; type=EST; length=692bp
GACGGCGCAGAGCACAGACGCACTCACTCACACACACCGCACGACGCCCC
CGCTGTCAACTCCGTTCAGGTACACCGGCGTTGCAGCTTCTTGTCGTTCC
AGTCTTCCAGCTGCTGACATCTTGAGCCGTTCACTTCCGATCCAGCTGCT
GCCGTCGCTGCCTCCTTCTTCGTTCGCCGTCGTCAGCCGCACAAGGGGTC
TTGATAATTCTGGGAAGACCACTATTGTTTTGAAGATAAACGGAGAAGAT
ACTAGCGTTATCAGTCCTACACTTGGATTCAATATCAAAACCATTACTTA
CCAAAAGTAAGAACTTTTTATTCCATGATTTAGGATCATTTTATGTCAGC
CAAAAATGAGAATTTGAAGTCTTTAAACGCTGTTTAGTTTTTAGTGCGAA
CATTTTGGTTCCGATATTTTTTGAATTTGACTGGTACACTTTAAACATAT
GGGATGTAGGAGGCCAAAGGACTATAAGATCATATTGGAGGAACTACTTT
GAGCAAACTGATGGTTTGGTGTGGGTGGTTGATGGTTCCGATCTTAGAAG
ACTGGATGATTGCAAAATGGAACTAGACAATCTTTTAAAGGAAGAGGCTA
TCAGGGGCATCCTTACTGATTCTAGCAAATAAGCAGGACATCAATGGTGC
TCTTACCCCACAGAGATTGCTAAAAGTCTGAACTTGGAAGCC
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