FC920748

Overview
NameFC920748
Unique NameFC920748
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length692
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC920748 vs. ExPASy Swiss-Prot
Match: ARF5_RAT (ADP-ribosylation factor 5 OS=Rattus norvegicus GN=Arf5 PE=1 SV=2)

HSP 1 Score: 61.6178 bits (148), Expect = 1.808e-15
Identity = 26/61 (42.62%), Postives = 39/61 (63.93%), Query Frame = 3 
Query:  423 EFDWYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDGSDLRRLDDCKMELDNLLKEEAIR 605
            E+      +WDVGGQ  IR  WR+YF+ T GL++VVD +D  R+ +   EL  +L+E+ +R
Sbjct:   57 EYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELR 117

HSP 2 Score: 38.5058 bits (88), Expect = 1.808e-15
Identity = 16/36 (44.44%), Postives = 25/36 (69.44%), Query Frame = 2 
Query:  197 GLDNSGKTTIVLKINGEDTSVISPTLGFNIKTITYQ 304
            GLD +GKTTI+ K+   +     PT+GFN++T+ Y+
Sbjct:   24 GLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYK 59

HSP 3 Score: 22.7126 bits (47), Expect = 1.808e-15
Identity = 11/24 (45.83%), Postives = 14/24 (58.33%), Query Frame = 1 
Query:  598 LSGASLLILANKQDINGALTPQRL 669
            L  A LL+ ANKQD+  A+    L
Sbjct:  116 LRDAVLLVFANKQDMPNAMPVSEL 139
[Close]
BLAST of FC920748 vs. ExPASy Swiss-Prot
Match: ARF5_MOUSE (ADP-ribosylation factor 5 OS=Mus musculus GN=Arf5 PE=2 SV=2)

HSP 1 Score: 61.6178 bits (148), Expect = 1.808e-15
Identity = 26/61 (42.62%), Postives = 39/61 (63.93%), Query Frame = 3 
Query:  423 EFDWYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDGSDLRRLDDCKMELDNLLKEEAIR 605
            E+      +WDVGGQ  IR  WR+YF+ T GL++VVD +D  R+ +   EL  +L+E+ +R
Sbjct:   57 EYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELR 117

HSP 2 Score: 38.5058 bits (88), Expect = 1.808e-15
Identity = 16/36 (44.44%), Postives = 25/36 (69.44%), Query Frame = 2 
Query:  197 GLDNSGKTTIVLKINGEDTSVISPTLGFNIKTITYQ 304
            GLD +GKTTI+ K+   +     PT+GFN++T+ Y+
Sbjct:   24 GLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYK 59

HSP 3 Score: 22.7126 bits (47), Expect = 1.808e-15
Identity = 11/24 (45.83%), Postives = 14/24 (58.33%), Query Frame = 1 
Query:  598 LSGASLLILANKQDINGALTPQRL 669
            L  A LL+ ANKQD+  A+    L
Sbjct:  116 LRDAVLLVFANKQDMPNAMPVSEL 139
[Close]
BLAST of FC920748 vs. ExPASy Swiss-Prot
Match: ARF5_HUMAN (ADP-ribosylation factor 5 OS=Homo sapiens GN=ARF5 PE=1 SV=2)

HSP 1 Score: 61.6178 bits (148), Expect = 1.808e-15
Identity = 26/61 (42.62%), Postives = 39/61 (63.93%), Query Frame = 3 
Query:  423 EFDWYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDGSDLRRLDDCKMELDNLLKEEAIR 605
            E+      +WDVGGQ  IR  WR+YF+ T GL++VVD +D  R+ +   EL  +L+E+ +R
Sbjct:   57 EYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELR 117

HSP 2 Score: 38.5058 bits (88), Expect = 1.808e-15
Identity = 16/36 (44.44%), Postives = 25/36 (69.44%), Query Frame = 2 
Query:  197 GLDNSGKTTIVLKINGEDTSVISPTLGFNIKTITYQ 304
            GLD +GKTTI+ K+   +     PT+GFN++T+ Y+
Sbjct:   24 GLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYK 59

HSP 3 Score: 22.7126 bits (47), Expect = 1.808e-15
Identity = 11/24 (45.83%), Postives = 14/24 (58.33%), Query Frame = 1 
Query:  598 LSGASLLILANKQDINGALTPQRL 669
            L  A LL+ ANKQD+  A+    L
Sbjct:  116 LRDAVLLVFANKQDMPNAMPVSEL 139
[Close]
BLAST of FC920748 vs. ExPASy Swiss-Prot
Match: ARF12_CAEEL (ADP-ribosylation factor 1-like 2 OS=Caenorhabditis elegans GN=arf-1.2 PE=1 SV=2)

HSP 1 Score: 62.003 bits (149), Expect = 2.340e-15
Identity = 26/61 (42.62%), Postives = 40/61 (65.57%), Query Frame = 3 
Query:  423 EFDWYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDGSDLRRLDDCKMELDNLLKEEAIR 605
            E+   +  +WDVGGQ  IR  WR+YF+ T GL++VVD +D  R+ + + EL  +L E+ +R
Sbjct:   57 EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVGEAREELMRMLAEDELR 117

HSP 2 Score: 38.5058 bits (88), Expect = 2.340e-15
Identity = 16/36 (44.44%), Postives = 25/36 (69.44%), Query Frame = 2 
Query:  197 GLDNSGKTTIVLKINGEDTSVISPTLGFNIKTITYQ 304
            GLD +GKTTI+ K+   +     PT+GFN++T+ Y+
Sbjct:   24 GLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYK 59

HSP 3 Score: 21.9422 bits (45), Expect = 2.340e-15
Identity = 10/19 (52.63%), Postives = 13/19 (68.42%), Query Frame = 1 
Query:  598 LSGASLLILANKQDINGAL 654
            L  A LL+ ANKQD+  A+
Sbjct:  116 LRDAVLLVFANKQDLPQAM 134
[Close]
BLAST of FC920748 vs. ExPASy Swiss-Prot
Match: ARF12_CAEBR (ADP-ribosylation factor 1-like 2 OS=Caenorhabditis briggsae GN=arf-1.2 PE=3 SV=3)

HSP 1 Score: 62.003 bits (149), Expect = 2.340e-15
Identity = 26/61 (42.62%), Postives = 40/61 (65.57%), Query Frame = 3 
Query:  423 EFDWYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDGSDLRRLDDCKMELDNLLKEEAIR 605
            E+   +  +WDVGGQ  IR  WR+YF+ T GL++VVD +D  R+ + + EL  +L E+ +R
Sbjct:   57 EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVGEAREELMRMLAEDELR 117

HSP 2 Score: 38.5058 bits (88), Expect = 2.340e-15
Identity = 16/36 (44.44%), Postives = 25/36 (69.44%), Query Frame = 2 
Query:  197 GLDNSGKTTIVLKINGEDTSVISPTLGFNIKTITYQ 304
            GLD +GKTTI+ K+   +     PT+GFN++T+ Y+
Sbjct:   24 GLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYK 59

HSP 3 Score: 21.9422 bits (45), Expect = 2.340e-15
Identity = 10/19 (52.63%), Postives = 13/19 (68.42%), Query Frame = 1 
Query:  598 LSGASLLILANKQDINGAL 654
            L  A LL+ ANKQD+  A+
Sbjct:  116 LRDAVLLVFANKQDLPQAM 134
[Close]
BLAST of FC920748 vs. ExPASy Swiss-Prot
Match: ARF4_BOVIN (ADP-ribosylation factor 4 OS=Bos taurus GN=ARF4 PE=2 SV=3)

HSP 1 Score: 61.6178 bits (148), Expect = 2.340e-15
Identity = 26/61 (42.62%), Postives = 39/61 (63.93%), Query Frame = 3 
Query:  423 EFDWYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDGSDLRRLDDCKMELDNLLKEEAIR 605
            E+      +WDVGGQ  IR  WR+YF+ T GL++VVD +D  R+ +   EL  +L+E+ +R
Sbjct:   57 EYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIQEGAEELQKMLQEDELR 117

HSP 2 Score: 38.5058 bits (88), Expect = 2.340e-15
Identity = 16/36 (44.44%), Postives = 25/36 (69.44%), Query Frame = 2 
Query:  197 GLDNSGKTTIVLKINGEDTSVISPTLGFNIKTITYQ 304
            GLD +GKTTI+ K+   +     PT+GFN++T+ Y+
Sbjct:   24 GLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYK 59

HSP 3 Score: 22.3274 bits (46), Expect = 2.340e-15
Identity = 10/19 (52.63%), Postives = 13/19 (68.42%), Query Frame = 1 
Query:  598 LSGASLLILANKQDINGAL 654
            L  A LL+ ANKQD+  A+
Sbjct:  116 LRDAVLLLFANKQDLPNAM 134
[Close]
BLAST of FC920748 vs. ExPASy Swiss-Prot
Match: ARF_VIGUN (ADP-ribosylation factor OS=Vigna unguiculata GN=ARF PE=2 SV=3)

HSP 1 Score: 61.2326 bits (147), Expect = 2.340e-15
Identity = 26/61 (42.62%), Postives = 40/61 (65.57%), Query Frame = 3 
Query:  423 EFDWYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDGSDLRRLDDCKMELDNLLKEEAIR 605
            E+   +  +WDVGGQ  IR  WR+YF+ T GL++VVD +D  R+ + + EL  +L E+ +R
Sbjct:   57 EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELR 117

HSP 2 Score: 38.5058 bits (88), Expect = 2.340e-15
Identity = 16/36 (44.44%), Postives = 25/36 (69.44%), Query Frame = 2 
Query:  197 GLDNSGKTTIVLKINGEDTSVISPTLGFNIKTITYQ 304
            GLD +GKTTI+ K+   +     PT+GFN++T+ Y+
Sbjct:   24 GLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYK 59

HSP 3 Score: 22.7126 bits (47), Expect = 2.340e-15
Identity = 10/19 (52.63%), Postives = 13/19 (68.42%), Query Frame = 1 
Query:  598 LSGASLLILANKQDINGAL 654
            L  A LL+ ANKQD+  A+
Sbjct:  116 LRDAVLLVFANKQDLPNAM 134
[Close]
BLAST of FC920748 vs. ExPASy Swiss-Prot
Match: ARF_MAIZE (ADP-ribosylation factor OS=Zea mays GN=ARF1 PE=2 SV=2)

HSP 1 Score: 61.2326 bits (147), Expect = 2.340e-15
Identity = 26/61 (42.62%), Postives = 40/61 (65.57%), Query Frame = 3 
Query:  423 EFDWYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDGSDLRRLDDCKMELDNLLKEEAIR 605
            E+   +  +WDVGGQ  IR  WR+YF+ T GL++VVD +D  R+ + + EL  +L E+ +R
Sbjct:   57 EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELR 117

HSP 2 Score: 38.5058 bits (88), Expect = 2.340e-15
Identity = 16/36 (44.44%), Postives = 25/36 (69.44%), Query Frame = 2 
Query:  197 GLDNSGKTTIVLKINGEDTSVISPTLGFNIKTITYQ 304
            GLD +GKTTI+ K+   +     PT+GFN++T+ Y+
Sbjct:   24 GLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYK 59

HSP 3 Score: 22.7126 bits (47), Expect = 2.340e-15
Identity = 10/19 (52.63%), Postives = 13/19 (68.42%), Query Frame = 1 
Query:  598 LSGASLLILANKQDINGAL 654
            L  A LL+ ANKQD+  A+
Sbjct:  116 LRDAVLLVFANKQDLPNAM 134
[Close]
BLAST of FC920748 vs. ExPASy Swiss-Prot
Match: ARF2_ARATH (ADP-ribosylation factor 2 OS=Arabidopsis thaliana GN=ARF2-A PE=2 SV=3)

HSP 1 Score: 61.2326 bits (147), Expect = 2.340e-15
Identity = 26/61 (42.62%), Postives = 40/61 (65.57%), Query Frame = 3 
Query:  423 EFDWYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDGSDLRRLDDCKMELDNLLKEEAIR 605
            E+   +  +WDVGGQ  IR  WR+YF+ T GL++VVD +D  R+ + + EL  +L E+ +R
Sbjct:   57 EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELR 117

HSP 2 Score: 38.5058 bits (88), Expect = 2.340e-15
Identity = 16/36 (44.44%), Postives = 25/36 (69.44%), Query Frame = 2 
Query:  197 GLDNSGKTTIVLKINGEDTSVISPTLGFNIKTITYQ 304
            GLD +GKTTI+ K+   +     PT+GFN++T+ Y+
Sbjct:   24 GLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYK 59

HSP 3 Score: 22.7126 bits (47), Expect = 2.340e-15
Identity = 10/19 (52.63%), Postives = 13/19 (68.42%), Query Frame = 1 
Query:  598 LSGASLLILANKQDINGAL 654
            L  A LL+ ANKQD+  A+
Sbjct:  116 LRDAVLLVFANKQDLPNAM 134
[Close]
BLAST of FC920748 vs. ExPASy Swiss-Prot
Match: ARF1_ARATH (ADP-ribosylation factor 1 OS=Arabidopsis thaliana GN=ARF1 PE=1 SV=2)

HSP 1 Score: 61.2326 bits (147), Expect = 2.340e-15
Identity = 26/61 (42.62%), Postives = 40/61 (65.57%), Query Frame = 3 
Query:  423 EFDWYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDGSDLRRLDDCKMELDNLLKEEAIR 605
            E+   +  +WDVGGQ  IR  WR+YF+ T GL++VVD +D  R+ + + EL  +L E+ +R
Sbjct:   57 EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELR 117

HSP 2 Score: 38.5058 bits (88), Expect = 2.340e-15
Identity = 16/36 (44.44%), Postives = 25/36 (69.44%), Query Frame = 2 
Query:  197 GLDNSGKTTIVLKINGEDTSVISPTLGFNIKTITYQ 304
            GLD +GKTTI+ K+   +     PT+GFN++T+ Y+
Sbjct:   24 GLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYK 59

HSP 3 Score: 22.7126 bits (47), Expect = 2.340e-15
Identity = 10/19 (52.63%), Postives = 13/19 (68.42%), Query Frame = 1 
Query:  598 LSGASLLILANKQDINGAL 654
            L  A LL+ ANKQD+  A+
Sbjct:  116 LRDAVLLVFANKQDLPNAM 134
The following BLAST results are available for this feature:
BLAST of FC920748 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
ARF5_RAT1.808e-1542.62ADP-ribosylation factor 5 OS=Rattus norvegicus GN=... [more]
ARF5_MOUSE1.808e-1542.62ADP-ribosylation factor 5 OS=Mus musculus GN=Arf5 ... [more]
ARF5_HUMAN1.808e-1542.62ADP-ribosylation factor 5 OS=Homo sapiens GN=ARF5 ... [more]
ARF12_CAEEL2.340e-1542.62ADP-ribosylation factor 1-like 2 OS=Caenorhabditis... [more]
ARF12_CAEBR2.340e-1542.62ADP-ribosylation factor 1-like 2 OS=Caenorhabditis... [more]
ARF4_BOVIN2.340e-1542.62ADP-ribosylation factor 4 OS=Bos taurus GN=ARF4 PE... [more]
ARF_VIGUN2.340e-1542.62ADP-ribosylation factor OS=Vigna unguiculata GN=AR... [more]
ARF_MAIZE2.340e-1542.62ADP-ribosylation factor OS=Zea mays GN=ARF1 PE=2 S... [more]
ARF2_ARATH2.340e-1542.62ADP-ribosylation factor 2 OS=Arabidopsis thaliana ... [more]
ARF1_ARATH2.340e-1542.62ADP-ribosylation factor 1 OS=Arabidopsis thaliana ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32012E11EF RVDevelop1 Citrus clementina cDNA clone C32012E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920748 ID=FC920748; Name=FC920748; organism=Citrus clementina; type=EST; length=692bp
GACGGCGCAGAGCACAGACGCACTCACTCACACACACCGCACGACGCCCC
CGCTGTCAACTCCGTTCAGGTACACCGGCGTTGCAGCTTCTTGTCGTTCC
AGTCTTCCAGCTGCTGACATCTTGAGCCGTTCACTTCCGATCCAGCTGCT
GCCGTCGCTGCCTCCTTCTTCGTTCGCCGTCGTCAGCCGCACAAGGGGTC
TTGATAATTCTGGGAAGACCACTATTGTTTTGAAGATAAACGGAGAAGAT
ACTAGCGTTATCAGTCCTACACTTGGATTCAATATCAAAACCATTACTTA
CCAAAAGTAAGAACTTTTTATTCCATGATTTAGGATCATTTTATGTCAGC
CAAAAATGAGAATTTGAAGTCTTTAAACGCTGTTTAGTTTTTAGTGCGAA
CATTTTGGTTCCGATATTTTTTGAATTTGACTGGTACACTTTAAACATAT
GGGATGTAGGAGGCCAAAGGACTATAAGATCATATTGGAGGAACTACTTT
GAGCAAACTGATGGTTTGGTGTGGGTGGTTGATGGTTCCGATCTTAGAAG
ACTGGATGATTGCAAAATGGAACTAGACAATCTTTTAAAGGAAGAGGCTA
TCAGGGGCATCCTTACTGATTCTAGCAAATAAGCAGGACATCAATGGTGC
TCTTACCCCACAGAGATTGCTAAAAGTCTGAACTTGGAAGCC
back to top