FC920748

Overview
NameFC920748
Unique NameFC920748
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length692
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC920748 vs. ExPASy Swiss-Prot
Match: ARL_SCHPO (ADP-ribosylation factor-like protein alp41 OS=Schizosaccharomyces pombe GN=alp41 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.345e-15
Identity = 28/60 (46.67%), Postives = 42/60 (70.00%), Query Frame = 3 
Query:  423 EFDWYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDGSDLRRLDDCKMELDNLLKEEAI 602
            E +     IWD+GGQ+T+R++W+NYFE T+ ++WVVD  D  RL++C+  L  LL EE +
Sbjct:   56 EVEGLRFTIWDIGGQKTLRNFWKNYFESTEAIIWVVDSLDDLRLEECRNTLQELLVEEKL 115

HSP 2 Score: 30.8018 bits (68), Expect = 2.345e-15
Identity = 12/29 (41.38%), Postives = 22/29 (75.86%), Query Frame = 1 
Query:  592 KRLSGASLLILANKQDINGALTPQRLLKV 678
            ++L   S+L+LANK D++GAL+ + + K+
Sbjct:  113 EKLLFTSILVLANKSDVSGALSSEEISKI 141
[Close]
BLAST of FC920748 vs. ExPASy Swiss-Prot
Match: ARF_ASHGO (ADP-ribosylation factor OS=Ashbya gossypii GN=ARF1 PE=3 SV=3)

HSP 1 Score: 60.4622 bits (145), Expect = 3.920e-15
Identity = 25/61 (40.98%), Postives = 39/61 (63.93%), Query Frame = 3 
Query:  423 EFDWYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDGSDLRRLDDCKMELDNLLKEEAIR 605
            E+   +  +WDVGGQ  IR  WR+YF  T+G+++VVD +D  R+ + +  L  +L E+ IR
Sbjct:   57 EYKNISFTVWDVGGQDKIRPLWRHYFRNTEGIIFVVDSNDRSRIAEAREVLQRMLNEDEIR 117

HSP 2 Score: 39.2762 bits (90), Expect = 3.920e-15
Identity = 15/36 (41.67%), Postives = 25/36 (69.44%), Query Frame = 2 
Query:  197 GLDNSGKTTIVLKINGEDTSVISPTLGFNIKTITYQ 304
            GLD +GKTT++ K+   +     PT+GFN++T+ Y+
Sbjct:   24 GLDGAGKTTVLYKLKLGEVVTTIPTIGFNVETVEYK 59

HSP 3 Score: 21.9422 bits (45), Expect = 3.920e-15
Identity = 9/20 (45.00%), Postives = 14/20 (70.00%), Query Frame = 1 
Query:  598 LSGASLLILANKQDINGALT 657
            +  A LL+ ANKQD+  A++
Sbjct:  116 IRNAVLLVFANKQDLPEAMS 135
[Close]
BLAST of FC920748 vs. ExPASy Swiss-Prot
Match: ARF2_RAT (ADP-ribosylation factor 2 OS=Rattus norvegicus GN=Arf2 PE=2 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 3.967e-15
Identity = 26/61 (42.62%), Postives = 41/61 (67.21%), Query Frame = 3 
Query:  423 EFDWYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDGSDLRRLDDCKMELDNLLKEEAIR 605
            E+   +  +WDVGGQ  IR  WR+YF+ T GL++VVD +D  R+++ + EL  +L E+ +R
Sbjct:   57 EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELTRMLAEDELR 117

HSP 2 Score: 38.5058 bits (88), Expect = 3.967e-15
Identity = 16/36 (44.44%), Postives = 25/36 (69.44%), Query Frame = 2 
Query:  197 GLDNSGKTTIVLKINGEDTSVISPTLGFNIKTITYQ 304
            GLD +GKTTI+ K+   +     PT+GFN++T+ Y+
Sbjct:   24 GLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYK 59
[Close]
BLAST of FC920748 vs. ExPASy Swiss-Prot
Match: ARF2_MOUSE (ADP-ribosylation factor 2 OS=Mus musculus GN=Arf2 PE=1 SV=2)

HSP 1 Score: 63.5438 bits (153), Expect = 3.967e-15
Identity = 26/61 (42.62%), Postives = 41/61 (67.21%), Query Frame = 3 
Query:  423 EFDWYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDGSDLRRLDDCKMELDNLLKEEAIR 605
            E+   +  +WDVGGQ  IR  WR+YF+ T GL++VVD +D  R+++ + EL  +L E+ +R
Sbjct:   57 EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELTRMLAEDELR 117

HSP 2 Score: 38.5058 bits (88), Expect = 3.967e-15
Identity = 16/36 (44.44%), Postives = 25/36 (69.44%), Query Frame = 2 
Query:  197 GLDNSGKTTIVLKINGEDTSVISPTLGFNIKTITYQ 304
            GLD +GKTTI+ K+   +     PT+GFN++T+ Y+
Sbjct:   24 GLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYK 59
[Close]
BLAST of FC920748 vs. ExPASy Swiss-Prot
Match: ARF2_BOVIN (ADP-ribosylation factor 2 OS=Bos taurus GN=ARF2 PE=2 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 3.967e-15
Identity = 26/61 (42.62%), Postives = 41/61 (67.21%), Query Frame = 3 
Query:  423 EFDWYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDGSDLRRLDDCKMELDNLLKEEAIR 605
            E+   +  +WDVGGQ  IR  WR+YF+ T GL++VVD +D  R+++ + EL  +L E+ +R
Sbjct:   57 EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELTRMLAEDELR 117

HSP 2 Score: 38.5058 bits (88), Expect = 3.967e-15
Identity = 16/36 (44.44%), Postives = 25/36 (69.44%), Query Frame = 2 
Query:  197 GLDNSGKTTIVLKINGEDTSVISPTLGFNIKTITYQ 304
            GLD +GKTTI+ K+   +     PT+GFN++T+ Y+
Sbjct:   24 GLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYK 59
[Close]
BLAST of FC920748 vs. ExPASy Swiss-Prot
Match: ARL3_XENLA (ADP-ribosylation factor-like protein 3 OS=Xenopus laevis GN=arl3 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 5.152e-15
Identity = 31/59 (52.54%), Postives = 43/59 (72.88%), Query Frame = 3 
Query:  435 YTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDGSDLRRLDDCKMELDNLLKEEAIRGI 611
            + LN+WD+GGQR IR YWRNYFE TD L++V+D +D +R ++   EL  LL EE + G+
Sbjct:   61 FKLNVWDIGGQRKIRPYWRNYFENTDVLIYVIDSADRKRFEETGQELAELLDEEKLSGV 119

HSP 2 Score: 25.0238 bits (53), Expect = 5.152e-15
Identity = 10/17 (58.82%), Postives = 14/17 (82.35%), Query Frame = 1 
Query:  592 KRLSGASLLILANKQDI 642
            ++LSG  +LI ANKQD+
Sbjct:  114 EKLSGVPVLIFANKQDL 130
[Close]
BLAST of FC920748 vs. ExPASy Swiss-Prot
Match: ARL3_DANRE (ADP-ribosylation factor-like protein 3 OS=Danio rerio GN=arl3 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 6.695e-15
Identity = 31/59 (52.54%), Postives = 43/59 (72.88%), Query Frame = 3 
Query:  435 YTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDGSDLRRLDDCKMELDNLLKEEAIRGI 611
            + LN+WD+GGQR IR YWRNYFE TD L++V+D +D +R ++   EL  LL EE + G+
Sbjct:   61 FKLNVWDIGGQRKIRPYWRNYFENTDVLIYVIDSADRKRFEETGQELAELLDEEKLSGV 119

HSP 2 Score: 24.6386 bits (52), Expect = 6.695e-15
Identity = 9/17 (52.94%), Postives = 14/17 (82.35%), Query Frame = 1 
Query:  592 KRLSGASLLILANKQDI 642
            ++LSG  +L+ ANKQD+
Sbjct:  114 EKLSGVPVLVFANKQDL 130
[Close]
BLAST of FC920748 vs. ExPASy Swiss-Prot
Match: ARL3_TAEGU (ADP-ribosylation factor-like protein 3 OS=Taeniopygia guttata GN=ARL3 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 6.695e-15
Identity = 31/59 (52.54%), Postives = 43/59 (72.88%), Query Frame = 3 
Query:  435 YTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDGSDLRRLDDCKMELDNLLKEEAIRGI 611
            + LN+WD+GGQR IR YWRNYFE TD L++V+D +D +R ++   EL  LL EE + G+
Sbjct:   61 FKLNVWDIGGQRKIRPYWRNYFENTDILIYVIDSADRKRFEETGQELAELLDEEKLSGV 119

HSP 2 Score: 25.0238 bits (53), Expect = 6.695e-15
Identity = 10/17 (58.82%), Postives = 14/17 (82.35%), Query Frame = 1 
Query:  592 KRLSGASLLILANKQDI 642
            ++LSG  +LI ANKQD+
Sbjct:  114 EKLSGVPVLIFANKQDL 130
[Close]
BLAST of FC920748 vs. ExPASy Swiss-Prot
Match: ARD1_RAT (GTP-binding protein ARD-1 (Fragment) OS=Rattus norvegicus GN=Trim23 PE=2 SV=1)

HSP 1 Score: 48.9062 bits (115), Expect = 7.953e-15
Identity = 23/64 (35.94%), Postives = 35/64 (54.69%), Query Frame = 3 
Query:  423 EFDWYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDGSDLRRLDDCKMELDNLLKEEAIRGIL 614
            E+      IWDVG +  +R  W++Y+  T  +V+VVD S   R+ +   EL  LL E+ +R  L
Sbjct:  424 EYKNLKFTIWDVGEKHKLRPLWKHYYLNTQAVVFVVDSSHRDRISEAHSELAKLLTEKELRDAL 487

HSP 2 Score: 41.5874 bits (96), Expect = 7.953e-15
Identity = 17/38 (44.74%), Postives = 27/38 (71.05%), Query Frame = 2 
Query:  191 TRGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTITYQ 304
            T GLD +GKTTI+ K+  ++     PT+GFN++T+ Y+
Sbjct:  389 TLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVEYK 426

HSP 3 Score: 30.0314 bits (66), Expect = 7.953e-15
Identity = 14/29 (48.28%), Postives = 20/29 (68.97%), Query Frame = 1 
Query:  592 KRLSGASLLILANKQDINGALTPQRLLKV 678
            K L  A LLI ANKQD+ GAL+ + + ++
Sbjct:  481 KELRDALLLIFANKQDVAGALSVEEITEL 509
[Close]
BLAST of FC920748 vs. ExPASy Swiss-Prot
Match: ARF1_DICDI (ADP-ribosylation factor 1 OS=Dictyostelium discoideum GN=arfA PE=1 SV=3)

HSP 1 Score: 62.3882 bits (150), Expect = 2.481e-14
Identity = 27/61 (44.26%), Postives = 38/61 (62.30%), Query Frame = 3 
Query:  423 EFDWYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDGSDLRRLDDCKMELDNLLKEEAIR 605
            EF      +WDVGGQ  IR  WR+YF+ T GL++VVD +D  R+ +   EL  +L E+ +R
Sbjct:   57 EFKNINFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIQEACDELTKMLNEDELR 117

HSP 2 Score: 36.965 bits (84), Expect = 2.481e-14
Identity = 15/36 (41.67%), Postives = 25/36 (69.44%), Query Frame = 2 
Query:  197 GLDNSGKTTIVLKINGEDTSVISPTLGFNIKTITYQ 304
            GLD +GKTTI+ K+   +     PT+GFN++T+ ++
Sbjct:   24 GLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEFK 59
The following BLAST results are available for this feature:
BLAST of FC920748 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
ARL_SCHPO2.345e-1546.67ADP-ribosylation factor-like protein alp41 OS=Schi... [more]
ARF_ASHGO3.920e-1540.98ADP-ribosylation factor OS=Ashbya gossypii GN=ARF1... [more]
ARF2_RAT3.967e-1542.62ADP-ribosylation factor 2 OS=Rattus norvegicus GN=... [more]
ARF2_MOUSE3.967e-1542.62ADP-ribosylation factor 2 OS=Mus musculus GN=Arf2 ... [more]
ARF2_BOVIN3.967e-1542.62ADP-ribosylation factor 2 OS=Bos taurus GN=ARF2 PE... [more]
ARL3_XENLA5.152e-1552.54ADP-ribosylation factor-like protein 3 OS=Xenopus ... [more]
ARL3_DANRE6.695e-1552.54ADP-ribosylation factor-like protein 3 OS=Danio re... [more]
ARL3_TAEGU6.695e-1552.54ADP-ribosylation factor-like protein 3 OS=Taeniopy... [more]
ARD1_RAT7.953e-1535.94GTP-binding protein ARD-1 (Fragment) OS=Rattus nor... [more]
ARF1_DICDI2.481e-1444.26ADP-ribosylation factor 1 OS=Dictyostelium discoid... [more]

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Properties
Property NameValue
Genbank descriptionC32012E11EF RVDevelop1 Citrus clementina cDNA clone C32012E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920748 ID=FC920748; Name=FC920748; organism=Citrus clementina; type=EST; length=692bp
GACGGCGCAGAGCACAGACGCACTCACTCACACACACCGCACGACGCCCC
CGCTGTCAACTCCGTTCAGGTACACCGGCGTTGCAGCTTCTTGTCGTTCC
AGTCTTCCAGCTGCTGACATCTTGAGCCGTTCACTTCCGATCCAGCTGCT
GCCGTCGCTGCCTCCTTCTTCGTTCGCCGTCGTCAGCCGCACAAGGGGTC
TTGATAATTCTGGGAAGACCACTATTGTTTTGAAGATAAACGGAGAAGAT
ACTAGCGTTATCAGTCCTACACTTGGATTCAATATCAAAACCATTACTTA
CCAAAAGTAAGAACTTTTTATTCCATGATTTAGGATCATTTTATGTCAGC
CAAAAATGAGAATTTGAAGTCTTTAAACGCTGTTTAGTTTTTAGTGCGAA
CATTTTGGTTCCGATATTTTTTGAATTTGACTGGTACACTTTAAACATAT
GGGATGTAGGAGGCCAAAGGACTATAAGATCATATTGGAGGAACTACTTT
GAGCAAACTGATGGTTTGGTGTGGGTGGTTGATGGTTCCGATCTTAGAAG
ACTGGATGATTGCAAAATGGAACTAGACAATCTTTTAAAGGAAGAGGCTA
TCAGGGGCATCCTTACTGATTCTAGCAAATAAGCAGGACATCAATGGTGC
TCTTACCCCACAGAGATTGCTAAAAGTCTGAACTTGGAAGCC
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