FC920748 | Citrus Genome Database

Overview


Name	FC920748
Unique Name	FC920748
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	692

Libraries


Library Name	Type
RVDevelop1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of FC920748 vs. ExPASy Swiss-Prot
Match: ARF4_PONAB (ADP-ribosylation factor 4 OS=Pongo abelii GN=ARF4 PE=2 SV=3)

HSP 1 Score: 56.9954 bits (136), Expect = 5.160e-14
Identity = 24/61 (39.34%), Postives = 37/61 (60.66%), Query Frame = 3

Query:  423 EFDWYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDGSDLRRLDDCKMELDNLLKEEAIR 605
            E+      +WDVGGQ  IR  W++YF+ T GL++VVD +D  R+ +   EL  +L  + +R
Sbjct:   57 EYKNICFTVWDVGGQDRIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELR 117

HSP 2 Score: 38.5058 bits (88), Expect = 5.160e-14
Identity = 16/36 (44.44%), Postives = 25/36 (69.44%), Query Frame = 2

Query:  197 GLDNSGKTTIVLKINGEDTSVISPTLGFNIKTITYQ 304
            GLD +GKTTI+ K+   +     PT+GFN++T+ Y+
Sbjct:   24 GLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYK 59

HSP 3 Score: 22.3274 bits (46), Expect = 5.160e-14
Identity = 10/19 (52.63%), Postives = 13/19 (68.42%), Query Frame = 1

Query:  598 LSGASLLILANKQDINGAL 654
            L  A LL+ ANKQD+  A+
Sbjct:  116 LRDAVLLLFANKQDLPNAM 134

[Close]

BLAST of FC920748 vs. ExPASy Swiss-Prot
Match: ARF4_HUMAN (ADP-ribosylation factor 4 OS=Homo sapiens GN=ARF4 PE=1 SV=3)

HSP 1 Score: 56.9954 bits (136), Expect = 5.160e-14
Identity = 24/61 (39.34%), Postives = 37/61 (60.66%), Query Frame = 3

Query:  423 EFDWYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDGSDLRRLDDCKMELDNLLKEEAIR 605
            E+      +WDVGGQ  IR  W++YF+ T GL++VVD +D  R+ +   EL  +L  + +R
Sbjct:   57 EYKNICFTVWDVGGQDRIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELR 117

HSP 2 Score: 38.5058 bits (88), Expect = 5.160e-14
Identity = 16/36 (44.44%), Postives = 25/36 (69.44%), Query Frame = 2

Query:  197 GLDNSGKTTIVLKINGEDTSVISPTLGFNIKTITYQ 304
            GLD +GKTTI+ K+   +     PT+GFN++T+ Y+
Sbjct:   24 GLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYK 59

HSP 3 Score: 22.3274 bits (46), Expect = 5.160e-14
Identity = 10/19 (52.63%), Postives = 13/19 (68.42%), Query Frame = 1

Query:  598 LSGASLLILANKQDINGAL 654
            L  A LL+ ANKQD+  A+
Sbjct:  116 LRDAVLLLFANKQDLPNAM 134

[Close]

BLAST of FC920748 vs. ExPASy Swiss-Prot
Match: ARFK_DICDI (ADP-ribosylation factor K OS=Dictyostelium discoideum GN=arrK PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.613e-13
Identity = 25/58 (43.10%), Postives = 44/58 (75.86%), Query Frame = 3

Query:  438 TLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDGSDLRRLDDCKMELDNLLKEEAIRGI 611
            ++ +WDVGGQ  IR+ W++Y+  T+ +++VVD +D  R+D+ K E+DNLL ++ ++GI
Sbjct:   70 SMTVWDVGGQHKIRALWKHYYHGTNAIIFVVDSTDRERMDEVKEEIDNLLIQDELKGI 127

HSP 2 Score: 28.4906 bits (62), Expect = 2.613e-13
Identity = 11/25 (44.00%), Postives = 17/25 (68.00%), Query Frame = 1

Query:  598 LSGASLLILANKQDINGALTPQRLL 672
            L G  +L+LANKQD+N A+    ++
Sbjct:  124 LKGIQILVLANKQDMNNAMNTAEIV 148

[Close]

BLAST of FC920748 vs. ExPASy Swiss-Prot
Match: ARL3_PIG (ADP-ribosylation factor-like protein 3 OS=Sus scrofa GN=ARL3 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 3.400e-13
Identity = 30/56 (53.57%), Postives = 42/56 (75.00%), Query Frame = 3

Query:  435 YTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDGSDLRRLDDCKMELDNLLKEEAI 602
            + LN+WD+GGQR IR YWRNYFE TD L++V+D +D +R ++   EL  LL+EE +
Sbjct:   61 FKLNVWDIGGQRKIRPYWRNYFENTDILIYVIDSADRKRFEETGQELAELLEEEKL 116

HSP 2 Score: 21.557 bits (44), Expect = 3.400e-13
Identity = 9/17 (52.94%), Postives = 13/17 (76.47%), Query Frame = 1

Query:  592 KRLSGASLLILANKQDI 642
            ++LS   +LI ANKQD+
Sbjct:  114 EKLSCVPVLIFANKQDL 130

[Close]

BLAST of FC920748 vs. ExPASy Swiss-Prot
Match: ARL3_BOVIN (ADP-ribosylation factor-like protein 3 OS=Bos taurus GN=ARL3 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 3.400e-13
Identity = 30/56 (53.57%), Postives = 42/56 (75.00%), Query Frame = 3

Query:  435 YTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDGSDLRRLDDCKMELDNLLKEEAI 602
            + LN+WD+GGQR IR YWRNYFE TD L++V+D +D +R ++   EL  LL+EE +
Sbjct:   61 FKLNVWDIGGQRKIRPYWRNYFENTDILIYVIDSADRKRFEETGQELAELLEEEKL 116

HSP 2 Score: 21.557 bits (44), Expect = 3.400e-13
Identity = 9/17 (52.94%), Postives = 13/17 (76.47%), Query Frame = 1

Query:  592 KRLSGASLLILANKQDI 642
            ++LS   +LI ANKQD+
Sbjct:  114 EKLSCVPVLIFANKQDL 130

[Close]

BLAST of FC920748 vs. ExPASy Swiss-Prot
Match: ARF4_RAT (ADP-ribosylation factor 4 OS=Rattus norvegicus GN=Arf4 PE=2 SV=2)

HSP 1 Score: 56.6102 bits (135), Expect = 4.421e-13
Identity = 24/61 (39.34%), Postives = 37/61 (60.66%), Query Frame = 3

Query:  423 EFDWYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDGSDLRRLDDCKMELDNLLKEEAIR 605
            E+      +WDVGGQ  IR  WR+YF+ T GL++VVD +D  R+ +    L  +L E+ ++
Sbjct:   57 EYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIQEGAAVLQKMLLEDELQ 117

HSP 2 Score: 38.5058 bits (88), Expect = 4.421e-13
Identity = 16/36 (44.44%), Postives = 25/36 (69.44%), Query Frame = 2

Query:  197 GLDNSGKTTIVLKINGEDTSVISPTLGFNIKTITYQ 304
            GLD +GKTTI+ K+   +     PT+GFN++T+ Y+
Sbjct:   24 GLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYK 59

[Close]

BLAST of FC920748 vs. ExPASy Swiss-Prot
Match: ARF4_MOUSE (ADP-ribosylation factor 4 OS=Mus musculus GN=Arf4 PE=2 SV=2)

HSP 1 Score: 56.6102 bits (135), Expect = 4.421e-13
Identity = 24/61 (39.34%), Postives = 37/61 (60.66%), Query Frame = 3

Query:  423 EFDWYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDGSDLRRLDDCKMELDNLLKEEAIR 605
            E+      +WDVGGQ  IR  WR+YF+ T GL++VVD +D  R+ +    L  +L E+ ++
Sbjct:   57 EYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIQEGAAVLQKMLLEDELQ 117

HSP 2 Score: 38.5058 bits (88), Expect = 4.421e-13
Identity = 16/36 (44.44%), Postives = 25/36 (69.44%), Query Frame = 2

Query:  197 GLDNSGKTTIVLKINGEDTSVISPTLGFNIKTITYQ 304
            GLD +GKTTI+ K+   +     PT+GFN++T+ Y+
Sbjct:   24 GLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYK 59

[Close]

BLAST of FC920748 vs. ExPASy Swiss-Prot
Match: AR13B_DANRE (ADP-ribosylation factor-like protein 13B OS=Danio rerio GN=arl13b PE=2 SV=1)

HSP 1 Score: 51.2174 bits (121), Expect = 6.392e-13
Identity = 20/58 (34.48%), Postives = 39/58 (67.24%), Query Frame = 3

Query:  435 YTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDGSDLRRLDDCKMELDNLLKEEAIRG 608
            + + I+D+GG + IR  W+NY+ ++ G+V+VVD SD++R+ + +  +  +L+   I G
Sbjct:   65 FEVTIFDLGGGKRIRGIWKNYYSESYGVVFVVDSSDVQRIQETRDTMAEVLRHPRIAG 122

HSP 2 Score: 34.6538 bits (78), Expect = 6.392e-13
Identity = 18/42 (42.86%), Postives = 25/42 (59.52%), Query Frame = 2

Query:  197 GLDNSGKTTIVLKINGEDTSVISPTLGFNIKTITYQK*ELFI 322
            GLDN+GKT  V  I GE    ++PT+GF+   +   K E+ I
Sbjct:   28 GLDNAGKTATVRGIQGESPLDVAPTVGFSKVDLKQGKFEVTI 69

HSP 3 Score: 28.1054 bits (61), Expect = 6.392e-13
Identity = 11/27 (40.74%), Postives = 20/27 (74.07%), Query Frame = 1

Query:  595 RLSGASLLILANKQDINGALTPQRLLK 675
            R++G  +L+LANKQD +GA+    +++
Sbjct:  119 RIAGKPVLVLANKQDQDGAMAEADIIE 145

[Close]

BLAST of FC920748 vs. ExPASy Swiss-Prot
Match: ARL3_CAEEL (ADP-ribosylation factor-like protein 3 OS=Caenorhabditis elegans GN=arl-3 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 7.453e-13
Identity = 29/57 (50.88%), Postives = 42/57 (73.68%), Query Frame = 3

Query:  441 LNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDGSDLRRLDDCKMELDNLLKEEAIRGI 611
            LN+WD+GGQR+IR YW NY+E  D L++V+D +D +R D+  +EL  LL EE +R +
Sbjct:   64 LNVWDIGGQRSIRPYWSNYYENIDTLIFVIDSNDKKRFDEMNIELGELLDEEKLRKV 120

HSP 2 Score: 21.1718 bits (43), Expect = 7.453e-13
Identity = 9/28 (32.14%), Postives = 17/28 (60.71%), Query Frame = 1

Query:  592 KRLSGASLLILANKQDINGALTPQRLLK 675
            ++L    +LI ANKQD+  A + + + +
Sbjct:  115 EKLRKVPVLIFANKQDLVTAASSEEITR 142

[Close]

BLAST of FC920748 vs. ExPASy Swiss-Prot
Match: ARL3_HUMAN (ADP-ribosylation factor-like protein 3 OS=Homo sapiens GN=ARL3 PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 7.453e-13
Identity = 29/56 (51.79%), Postives = 42/56 (75.00%), Query Frame = 3

Query:  435 YTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDGSDLRRLDDCKMELDNLLKEEAI 602
            + LN+WD+GGQR IR YW+NYFE TD L++V+D +D +R ++   EL  LL+EE +
Sbjct:   61 FKLNVWDIGGQRKIRPYWKNYFENTDILIYVIDSADRKRFEETGQELAELLEEEKL 116

HSP 2 Score: 21.557 bits (44), Expect = 7.453e-13
Identity = 9/17 (52.94%), Postives = 13/17 (76.47%), Query Frame = 1

Query:  592 KRLSGASLLILANKQDI 642
            ++LS   +LI ANKQD+
Sbjct:  114 EKLSCVPVLIFANKQDL 130

The following BLAST results are available for this feature:

BLAST of FC920748 vs. ExPASy Swiss-Prot

BLAST of FC920748 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87


Match Name	E-value	Identity	Description
ARF4_PONAB	5.160e-14	39.34	ADP-ribosylation factor 4 OS=Pongo abelii GN=ARF4 ...	[more]
ARF4_HUMAN	5.160e-14	39.34	ADP-ribosylation factor 4 OS=Homo sapiens GN=ARF4 ...	[more]
ARFK_DICDI	2.613e-13	43.10	ADP-ribosylation factor K OS=Dictyostelium discoid...	[more]
ARL3_PIG	3.400e-13	53.57	ADP-ribosylation factor-like protein 3 OS=Sus scro...	[more]
ARL3_BOVIN	3.400e-13	53.57	ADP-ribosylation factor-like protein 3 OS=Bos taur...	[more]
ARF4_RAT	4.421e-13	39.34	ADP-ribosylation factor 4 OS=Rattus norvegicus GN=...	[more]
ARF4_MOUSE	4.421e-13	39.34	ADP-ribosylation factor 4 OS=Mus musculus GN=Arf4 ...	[more]
AR13B_DANRE	6.392e-13	34.48	ADP-ribosylation factor-like protein 13B OS=Danio ...	[more]
ARL3_CAEEL	7.453e-13	50.88	ADP-ribosylation factor-like protein 3 OS=Caenorha...	[more]
ARL3_HUMAN	7.453e-13	51.79	ADP-ribosylation factor-like protein 3 OS=Homo sap...	[more]

Pages

Properties


Property Name	Value
Genbank description	C32012E11EF RVDevelop1 Citrus clementina cDNA clone C32012E11, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC920748 ID=FC920748; Name=FC920748; organism=Citrus clementina; type=EST; length=692bp
GACGGCGCAGAGCACAGACGCACTCACTCACACACACCGCACGACGCCCC
CGCTGTCAACTCCGTTCAGGTACACCGGCGTTGCAGCTTCTTGTCGTTCC
AGTCTTCCAGCTGCTGACATCTTGAGCCGTTCACTTCCGATCCAGCTGCT
GCCGTCGCTGCCTCCTTCTTCGTTCGCCGTCGTCAGCCGCACAAGGGGTC
TTGATAATTCTGGGAAGACCACTATTGTTTTGAAGATAAACGGAGAAGAT
ACTAGCGTTATCAGTCCTACACTTGGATTCAATATCAAAACCATTACTTA
CCAAAAGTAAGAACTTTTTATTCCATGATTTAGGATCATTTTATGTCAGC
CAAAAATGAGAATTTGAAGTCTTTAAACGCTGTTTAGTTTTTAGTGCGAA
CATTTTGGTTCCGATATTTTTTGAATTTGACTGGTACACTTTAAACATAT
GGGATGTAGGAGGCCAAAGGACTATAAGATCATATTGGAGGAACTACTTT
GAGCAAACTGATGGTTTGGTGTGGGTGGTTGATGGTTCCGATCTTAGAAG
ACTGGATGATTGCAAAATGGAACTAGACAATCTTTTAAAGGAAGAGGCTA
TCAGGGGCATCCTTACTGATTCTAGCAAATAAGCAGGACATCAATGGTGC
TCTTACCCCACAGAGATTGCTAAAAGTCTGAACTTGGAAGCC