FC920751

Overview
NameFC920751
Unique NameFC920751
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6470 contig Ccv1_Contig6470:63..786. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920751 vs. ExPASy Swiss-Prot
Match: ECHM_HUMAN (Enoyl-CoA hydratase, mitochondrial OS=Homo sapiens GN=ECHS1 PE=1 SV=4)

HSP 1 Score: 68.1662 bits (165), Expect = 5.034e-11
Identity = 48/175 (27.43%), Postives = 84/175 (48.00%), Query Frame = 3
Query:  171 PIRLPVFPALSS--SFKMASAQSQEDQVLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGAKFFSKEFILNYLMATYT-KPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFFVRLPG 686
            P+R P +   +S  +F+   A+ +       + + V ++ LNRP+ LNAL   +I  L +  + +E D  V  ++L G  +AF AG D+  +     +    +S +F+ ++   T   KP ++ +NG   GGG  +++      A E + FA PE  +G  P  G +    R  G
Sbjct:   18 PVRCPAWRPFASGANFEYIIAEKRG------KNNTVGLIQLNRPKALNALCDGLIDELNQALKTFEEDPAVGAIVLTGGDKAFAAGADIKEMQNLSFQDC--YSSKFLKHWDHLTQVKKPVIAAVNGYAFGGGCELAMMCDIIYAGEKAQFAQPEILIGTIPGAGGTQRLTRAVG 184          
BLAST of FC920751 vs. ExPASy Swiss-Prot
Match: ECHM_BOVIN (Enoyl-CoA hydratase, mitochondrial OS=Bos taurus GN=ECHS1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.034e-11
Identity = 48/173 (27.75%), Postives = 80/173 (46.24%), Query Frame = 3
Query:  171 PIRLPVFPALSSSFKMASAQSQEDQVLEEETSFVRILTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKGRAFCAGGDVAAVVRGINEGAKFFSKEFILNYLMAT-YTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFFVRLPG 686
            P+R  +F  +  SF  ++A        +   S V ++ LNRP+ LNAL   +I  L +  Q +E D  V  ++L G  + F AG D+  +     +    +S  F+ ++   T   KP ++ +NG  +GGG  +++      A E + F  PE  +G  P  G +    R  G
Sbjct:   14 PLRPWLFCPVQRSFASSAAFEYIITAKKGRNSNVGLIQLNRPKALNALCNGLIVELNQALQAFEEDPAVGAIVLTGGEKVFAAGADIKEMQSLTFQNC--YSGGFLSHWDQLTRVKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEILIGTIPGAGGTQRLTRAVG 184          
BLAST of FC920751 vs. ExPASy Swiss-Prot
Match: CAID_SALTY (Carnitinyl-CoA dehydratase OS=Salmonella typhimurium GN=caiD PE=3 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 6.575e-11
Identity = 45/136 (33.09%), Postives = 69/136 (50.74%), Query Frame = 3
Query:  279 LTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKG-RAFCAGGDVAAVVRGINEGAKFFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFFVRLP 683
            +TL+RP+  NA+ A+    + E F  +  D  +++ I+ G G + F AG D+ A   G    A F    F     +    KP ++ +NG   GGG  +++   F V  EN+ FA+PE  LG+ PD G     +RLP
Sbjct:   16 ITLDRPKA-NAIDAKTSFAMGEAFLNFRDDPELRVAIITGGGEKFFSAGWDLKAAAEGEAPDADFGPGGFAGLTEIFDLDKPVIAAVNGYAFGGGFELALAADFIVCAENASFALPEAKLGIVPDSGG---VLRLP 147          
BLAST of FC920751 vs. ExPASy Swiss-Prot
Match: CAID_SALTI (Carnitinyl-CoA dehydratase OS=Salmonella typhi GN=caiD PE=3 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 6.575e-11
Identity = 45/136 (33.09%), Postives = 69/136 (50.74%), Query Frame = 3
Query:  279 LTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKG-RAFCAGGDVAAVVRGINEGAKFFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFFVRLP 683
            +TL+RP+  NA+ A+    + E F  +  D  +++ I+ G G + F AG D+ A   G    A F    F     +    KP ++ +NG   GGG  +++   F V  EN+ FA+PE  LG+ PD G     +RLP
Sbjct:   16 ITLDRPKA-NAIDAKTSFAMGEAFLNFRDDPELRVAIITGGGEKFFSAGWDLKAAAEGEAPDADFGPGGFAGLTEIFDLDKPVIAAVNGYAFGGGFELALAADFIVCAENASFALPEAKLGIVPDSGG---VLRLP 147          
BLAST of FC920751 vs. ExPASy Swiss-Prot
Match: CAID_SALSV (Carnitinyl-CoA dehydratase OS=Salmonella schwarzengrund (strain CVM19633) GN=caiD PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.575e-11
Identity = 45/136 (33.09%), Postives = 69/136 (50.74%), Query Frame = 3
Query:  279 LTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKG-RAFCAGGDVAAVVRGINEGAKFFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFFVRLP 683
            +TL+RP+  NA+ A+    + E F  +  D  +++ I+ G G + F AG D+ A   G    A F    F     +    KP ++ +NG   GGG  +++   F V  EN+ FA+PE  LG+ PD G     +RLP
Sbjct:   16 ITLDRPKA-NAIDAKTSFAMGEAFLNFRDDPELRVAIITGGGEKFFSAGWDLKAAAEGEAPDADFGPGGFAGLTEIFDLDKPVIAAVNGYAFGGGFELALAADFIVCAENASFALPEAKLGIVPDSGG---VLRLP 147          
BLAST of FC920751 vs. ExPASy Swiss-Prot
Match: CAID_SALPK (Carnitinyl-CoA dehydratase OS=Salmonella paratyphi A (strain AKU_12601) GN=caiD PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.575e-11
Identity = 45/136 (33.09%), Postives = 69/136 (50.74%), Query Frame = 3
Query:  279 LTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKG-RAFCAGGDVAAVVRGINEGAKFFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFFVRLP 683
            +TL+RP+  NA+ A+    + E F  +  D  +++ I+ G G + F AG D+ A   G    A F    F     +    KP ++ +NG   GGG  +++   F V  EN+ FA+PE  LG+ PD G     +RLP
Sbjct:   16 ITLDRPKA-NAIDAKTSFAMGEAFLNFRDDPELRVAIITGGGEKFFSAGWDLKAAAEGEAPDADFGPGGFAGLTEIFDLDKPVIAAVNGYAFGGGFELALAADFIVCAENASFALPEAKLGIVPDSGG---VLRLP 147          
BLAST of FC920751 vs. ExPASy Swiss-Prot
Match: CAID_SALPC (Carnitinyl-CoA dehydratase OS=Salmonella paratyphi C (strain RKS4594) GN=caiD PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.575e-11
Identity = 45/136 (33.09%), Postives = 69/136 (50.74%), Query Frame = 3
Query:  279 LTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKG-RAFCAGGDVAAVVRGINEGAKFFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFFVRLP 683
            +TL+RP+  NA+ A+    + E F  +  D  +++ I+ G G + F AG D+ A   G    A F    F     +    KP ++ +NG   GGG  +++   F V  EN+ FA+PE  LG+ PD G     +RLP
Sbjct:   16 ITLDRPKA-NAIDAKTSFAMGEAFLNFRDDPELRVAIITGGGEKFFSAGWDLKAAAEGEAPDADFGPGGFAGLTEIFDLDKPVIAAVNGYAFGGGFELALAADFIVCAENASFALPEAKLGIVPDSGG---VLRLP 147          
BLAST of FC920751 vs. ExPASy Swiss-Prot
Match: CAID_SALPB (Carnitinyl-CoA dehydratase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=caiD PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.575e-11
Identity = 45/136 (33.09%), Postives = 69/136 (50.74%), Query Frame = 3
Query:  279 LTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKG-RAFCAGGDVAAVVRGINEGAKFFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFFVRLP 683
            +TL+RP+  NA+ A+    + E F  +  D  +++ I+ G G + F AG D+ A   G    A F    F     +    KP ++ +NG   GGG  +++   F V  EN+ FA+PE  LG+ PD G     +RLP
Sbjct:   16 ITLDRPKA-NAIDAKTSFAMGEAFLNFRDDPELRVAIITGGGEKFFSAGWDLKAAAEGEAPDADFGPGGFAGLTEIFDLDKPVIAAVNGYAFGGGFELALAADFIVCAENASFALPEAKLGIVPDSGG---VLRLP 147          
BLAST of FC920751 vs. ExPASy Swiss-Prot
Match: CAID_SALPA (Carnitinyl-CoA dehydratase OS=Salmonella paratyphi A GN=caiD PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.575e-11
Identity = 45/136 (33.09%), Postives = 69/136 (50.74%), Query Frame = 3
Query:  279 LTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKG-RAFCAGGDVAAVVRGINEGAKFFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFFVRLP 683
            +TL+RP+  NA+ A+    + E F  +  D  +++ I+ G G + F AG D+ A   G    A F    F     +    KP ++ +NG   GGG  +++   F V  EN+ FA+PE  LG+ PD G     +RLP
Sbjct:   16 ITLDRPKA-NAIDAKTSFAMGEAFLNFRDDPELRVAIITGGGEKFFSAGWDLKAAAEGEAPDADFGPGGFAGLTEIFDLDKPVIAAVNGYAFGGGFELALAADFIVCAENASFALPEAKLGIVPDSGG---VLRLP 147          
BLAST of FC920751 vs. ExPASy Swiss-Prot
Match: CAID_SALNS (Carnitinyl-CoA dehydratase OS=Salmonella newport (strain SL254) GN=caiD PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.575e-11
Identity = 45/136 (33.09%), Postives = 69/136 (50.74%), Query Frame = 3
Query:  279 LTLNRPRQLNALSAQMISRLLELFQRYETDSNVKLLILKGKG-RAFCAGGDVAAVVRGINEGAKFFSKEFILNYLMATYTKPQVSILNGIVMGGGAGVSIHGRFRVATENSVFAMPETALGLFPDIGASYFFVRLP 683
            +TL+RP+  NA+ A+    + E F  +  D  +++ I+ G G + F AG D+ A   G    A F    F     +    KP ++ +NG   GGG  +++   F V  EN+ FA+PE  LG+ PD G     +RLP
Sbjct:   16 ITLDRPKA-NAIDAKTSFAMGEAFLNFRDDPELRVAIITGGGEKFFSAGWDLKAAAEGEAPDADFGPGGFAGLTEIFDLDKPVIAAVNGYAFGGGFELALAADFIVCAENASFALPEAKLGIVPDSGG---VLRLP 147          
The following BLAST results are available for this feature:
BLAST of FC920751 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
ECHM_HUMAN5.034e-1127.43Enoyl-CoA hydratase, mitochondrial OS=Homo sapiens... [more]
ECHM_BOVIN5.034e-1127.75Enoyl-CoA hydratase, mitochondrial OS=Bos taurus G... [more]
CAID_SALTY6.575e-1133.09Carnitinyl-CoA dehydratase OS=Salmonella typhimuri... [more]
CAID_SALTI6.575e-1133.09Carnitinyl-CoA dehydratase OS=Salmonella typhi GN=... [more]
CAID_SALSV6.575e-1133.09Carnitinyl-CoA dehydratase OS=Salmonella schwarzen... [more]
CAID_SALPK6.575e-1133.09Carnitinyl-CoA dehydratase OS=Salmonella paratyphi... [more]
CAID_SALPC6.575e-1133.09Carnitinyl-CoA dehydratase OS=Salmonella paratyphi... [more]
CAID_SALPB6.575e-1133.09Carnitinyl-CoA dehydratase OS=Salmonella paratyphi... [more]
CAID_SALPA6.575e-1133.09Carnitinyl-CoA dehydratase OS=Salmonella paratyphi... [more]
CAID_SALNS6.575e-1133.09Carnitinyl-CoA dehydratase OS=Salmonella newport (... [more]

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Properties
Property NameValue
Genbank descriptionC32012F02EF RVDevelop1 Citrus clementina cDNA clone C32012F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920751 ID=FC920751; Name=FC920751; organism=Citrus clementina; type=EST; length=709bp
GAACTCGCGCCTGATGAGATGTCAAACGCCTTGCCCCTGCGGCCACGGTG
ACGTCTCTCAAAAAGTTGTCCATATCTCTCTTGCAAACGTTCTGAAGATG
AACCAAACCTGTCTGTAATAACTTGTGATTGGTGAATTGAATCGAGAGAG
AAGAGATCGTTTCCGCATTCCCTATTCGTCTTCCCGTTTTTCCAGCTCTA
TCAAGTTCGTTCAAGATGGCTTCCGCTCAATCACAGGAAGACCAGGTCTT
AGAAGAAGAGACCTCATTTGTAAGAATATTGACACTAAACAGGCCCAGGC
AATTGAATGCACTTTCAGCTCAAATGATTTCTCGGTTATTGGAACTTTTC
CAGCGCTATGAGACCGATTCGAACGTGAAGCTCTTAATTCTCAAGGGAAA
AGGAAGGGCATTTTGTGCTGGTGGTGATGTGGCCGCAGTTGTTCGCGGTA
TTAATGAGGGTGCCAAATTCTTTTCCAAGGAGTTCATCCTGAATTATTTG
ATGGCAACGTACACCAAACCCCAGGTTTCAATTCTTAATGGAATTGTCAT
GGGAGGTGGGGCTGGTGTTTCAATACATGGTAGATTCCGAGTTGCTACTG
AGAATTCGGTATTTGCAATGCCTGAGACAGCTTTGGGACTTTTCCCAGAT
ATTGGTGCCTCTTATTTCTTTGTCAGACTCCCTGGATTCTTCGGAGAATA
TGTTGGTCT
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