FC920765

Overview
NameFC920765
Unique NameFC920765
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14651 contig Ccv1_Contig14651:5..699. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC920765 vs. ExPASy Swiss-Prot
Match: LAR_DESUN (Leucoanthocyanidin reductase OS=Desmodium uncinatum GN=LAR PE=1 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 5.258e-35
Identity = 80/189 (42.33%), Postives = 117/189 (61.90%), Query Frame = 1 
Query:   79 SKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIKQ--VDVVISTVGHTLLADQVKIIAAIKEAGNVKRFLPSEFGNDVDRVEGAVEPTKSTYDVKAKIRRAVEAEGIPYTYVESYCFDGYFLPNLLQPEATAPPRDKVVILGDGNPKAVF 639
            +K++ L +GGTG+IG+F  +AS+  G+PTF+LVR   +S PSK+ ++  F++ G  ++ G + + E + K +K+  +DVVIS VG   L DQ+ ++ AIK    +KRFLPSEFG+DVDR +  VEP  + Y  K  +RRAVE  GIP+T +       +   +   P    PP D+  I GDGN KA F
Sbjct:   11 TKNRTLVVGGTGFIGQFITKASLGFGYPTFLLVRPGPVS-PSKAVIIKTFQDKGAKVIYGVINDKECMEKILKEYEIDVVISLVGGARLLDQLTLLEAIKSVKTIKRFLPSEFGHDVDRTD-PVEPGLTMYKEKRLVRRAVEEYGIPFTNICCNSIASWPYYDNCHPSQVPPPMDQFQIYGDGNTKAYF 197

HSP 2 Score: 24.6386 bits (52), Expect = 5.258e-35
Identity = 10/23 (43.48%), Postives = 16/23 (69.57%), Query Frame = 3 
Query:  624 SKSCF*QEDDIGTYTIKAVDDPR 692
            +K+ F   +DIG +T+K +DD R
Sbjct:  193 TKAYFIDGNDIGKFTMKTIDDIR 215
The following BLAST results are available for this feature:
BLAST of FC920765 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
LAR_DESUN5.258e-3542.33Leucoanthocyanidin reductase OS=Desmodium uncinatu... [more]

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Properties
Property NameValue
Genbank descriptionC32012G07EF RVDevelop1 Citrus clementina cDNA clone C32012G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920765 ID=FC920765; Name=FC920765; organism=Citrus clementina; type=EST; length=694bp
AACCATCCATTTGATCATTTCTAACAAAACGAAAAAAAAAATCTCAGTAA
TTGAACTGAACGAGTCTCAGAAATGGCATCGAAAAGTAAGATTCTATTCA
TCGGCGGGACAGGGTATATCGGTAAATTCACTGTCGAAGCGAGCGTAAAA
GCCGGCCACCCGACGTTCGTGCTCGTGAGAGAATCCACAATCTCTGGTCC
TTCCAAATCTCAACTCCTCGATCACTTCAAAAACCTCGGCGTCAATCTCG
TCATAGGAGATGTGTTGAATCACGAGAGTTTGGTGAAGGCGATTAAACAA
GTGGACGTGGTGATATCAACGGTCGGTCACACTTTATTAGCTGATCAGGT
CAAGATTATTGCTGCCATTAAAGAAGCCGGTAACGTTAAGAGATTCTTAC
CATCGGAATTTGGAAATGATGTTGATCGAGTCGAAGGCGCCGTAGAGCCA
ACAAAATCGACGTATGACGTAAAGGCGAAAATCCGCCGAGCCGTTGAGGC
AGAAGGCATTCCGTACACTTACGTAGAATCTTATTGTTTTGATGGCTATT
TCCTCCCCAATTTGTTGCAGCCTGAGGCCACTGCCCCCCCTAGGGATAAG
GTTGTCATCTTAGGCGATGGAAATCCAAAAGCTGTTTTTAACAGGAAGAT
GATATTGGAACCTACACTATCAAAGCGGTTGATGATCCGAGAAC
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