FC920770

Overview
NameFC920770
Unique NameFC920770
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920770 vs. ExPASy Swiss-Prot
Match: E13B_NICPL (Glucan endo-1,3-beta-glucosidase, basic vacuolar isoform OS=Nicotiana plumbaginifolia GN=GN2 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.013e-16
Identity = 55/173 (31.79%), Postives = 89/173 (51.45%), Query Frame = 2
Query:  149 QMMLVKWLGSVVFLAIGLFTNVLGAY-VGVNIGTDVSNMPSASDIVAILRANQITHVRLYDADSHMLKALSKSGIEVIVGVLNEEVLGIGEXXXXXXXWINKNVAAYMPTTNITAIAVGSQV--LTSIPNAASVLVSAMNNLHKALVASDLNFQVKISTPHSMDIIPRPFPPS 658
            QM  +  LG    L +     + GA  +GV  G   +N+P+  +++ + ++  I  +RLYD +   L+AL  S IEV++G+ N +V  I         W+ KNV  + P   I  IAVG+++  +T      S L  AM N++KA+  + L   +K+ST   M +I   +PPS
Sbjct:   11 QMAAITLLG---LLLVASSIEIAGAESIGVCYGMLGNNLPNHWEVIQLYKSRNIGRLRLYDPNHGALQALKGSNIEVMLGLPNSDVKHIASGMEHARWWVQKNVKDFWPDVKIKYIAVGNEISPVTGTSYLTSFLTPAMVNIYKAIGEAGLGNNIKVSTSVDMTLIGNSYPPS 180          
BLAST of FC920770 vs. ExPASy Swiss-Prot
Match: E136_ARATH (Glucan endo-1,3-beta-glucosidase 6 OS=Arabidopsis thaliana GN=At5g58090 PE=1 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.728e-16
Identity = 53/160 (33.12%), Postives = 86/160 (53.75%), Query Frame = 2
Query:  167 WLGSVVFLAIGLFTNVLGAYVGVNIGTDVSNMPSASDIVAILRANQITHVRLYDADSHMLKALSKSGIEVIVGVLNEEVLGIGEXXXXXXXWINKNVAAYMPT--TNITAIAVGSQVLTSIPNAA--SVLVSAMNNLHKALVASDLNFQVKISTPHSMDI 634
            W   ++ LA+ L      + +G N GT  S+      +V +LR N I  V+L+DA+   L+AL KSGIEV+VG+ NE +  +         W+ KNV+ ++ T   NI  +AVG++   S  N +  S    A+ N+  A++ + L  QVK++ P + D+
Sbjct:    3 WGSVLLLLAVALLCQRASS-IGANWGTQASHPLPPDIVVRMLRENGIQKVKLFDAEYDTLRALGKSGIEVMVGIPNEMLATLASSLKAAEKWVAKNVSTHISTDNVNIRYVAVGNEPFLSTYNGSYLSTTFPALRNIQIAIIKAGLQNQVKVTCPLNADV 161          
BLAST of FC920770 vs. ExPASy Swiss-Prot
Match: E133_SOLTU (Glucan endo-1,3-beta-glucosidase, basic isoform 3 (Fragment) OS=Solanum tuberosum GN=GLUB3 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.257e-16
Identity = 47/137 (34.31%), Postives = 76/137 (55.47%), Query Frame = 2
Query:  254 SNMPSASDIVAILRANQITHVRLYDADSHMLKALSKSGIEVIVGVLNEEVLGIGEXXXXXXXWINKNVAAYMPTTNITAIAVGSQV--LTSIPNAASVLVSAMNNLHKALVASDLNFQVKISTPHSMDIIPRPFPPS 658
            +N+PS S+++ + ++  I  +RLYD +   L AL  S IEVI+G+ N +V  I         W+ KNV  + P   I  IAVG+++  +T   +  S  V A+ N++KA+  + L   +K+ST   M +I   +PPS
Sbjct:    1 NNLPSHSEVIQLYKSRNIGRLRLYDPNHGALNALRGSNIEVILGLPNVDVKHIASGMEHARWWVQKNVKDFWPDVKIKYIAVGNEISPVTGTSSLTSFQVPALVNIYKAIGEAGLGNDIKVSTSVDMTLIGNSYPPS 137          
BLAST of FC920770 vs. ExPASy Swiss-Prot
Match: E13D_TOBAC (Glucan endo-1,3-beta-glucosidase OS=Nicotiana tabacum GN=SP41B PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.849e-16
Identity = 49/168 (29.17%), Postives = 92/168 (54.76%), Query Frame = 2
Query:  170 LGSVVFLAIGLFT---NVLGAY--VGVNIGTDVSNMPSASDIVAILRANQITHVRLYDADSHMLKALSKSGIEVIVGVLNEEVLGIGEXXXXXXXWINKNVAAYMPTTNITAIAVGSQVL-TSIPNAASVLVSAMNNLHKALVASDLNFQVKISTPHSMDIIPRPFPP 655
            LG+ V + +GL      + GA   +GV  G   +N+PS  D++ + +AN I  +R+Y  D+++ KAL+ S IE+I+ V N+++  +         W+  N+ ++ P      I++G++V  T+    +  L+ AM N++ AL A+ L  ++K+ST     ++   +PP
Sbjct:   12 LGAAVLILVGLLMCNIQITGAQSNIGVCYGEIANNLPSEQDVINLYKANGIRKMRIYYPDTNIFKALNGSNIEIILEVPNQDLEALAN-SSIANGWVQDNIRSHFPYVKFKYISIGNEVSPTNNGQYSQFLLHAMKNVYNALAAAGLQDKIKVSTATYSGLLANTYPP 178          
BLAST of FC920770 vs. ExPASy Swiss-Prot
Match: E13C_TOBAC (Glucan endo-1,3-beta-glucosidase OS=Nicotiana tabacum GN=SP41A PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.566e-16
Identity = 48/168 (28.57%), Postives = 93/168 (55.36%), Query Frame = 2
Query:  170 LGSVVFLAIGLFT---NVLGAY--VGVNIGTDVSNMPSASDIVAILRANQITHVRLYDADSHMLKALSKSGIEVIVGVLNEEVLGIGEXXXXXXXWINKNVAAYMPTTNITAIAVGSQVLTSIPNAAS-VLVSAMNNLHKALVASDLNFQVKISTPHSMDIIPRPFPP 655
            LG+ V + +GL      + GA   +GV  G   +N+PS  D++ + +AN I  +R+Y++D+++ K+L+ S IE+I+ V N+++  +         W+  N+ ++ P      I++G++V  S     S  L+ AM N++ AL A+ L  ++K++T     ++   +PP
Sbjct:   12 LGAAVLILVGLLMCNIQMTGAQSNIGVCYGKIANNLPSEQDVINLYKANGIRKMRIYNSDTNIFKSLNGSNIEIILDVPNQDLEALAN-SSIANGWVQDNIRSHFPYVKFKYISIGNEVSPSNNGQYSQFLLHAMENVYNALAAAGLQDKIKVTTATYSGLLANTYPP 178          
BLAST of FC920770 vs. ExPASy Swiss-Prot
Match: E13B_HEVBR (Glucan endo-1,3-beta-glucosidase, basic vacuolar isoform OS=Hevea brasiliensis GN=HGN1 PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 8.575e-16
Identity = 52/167 (31.14%), Postives = 88/167 (52.69%), Query Frame = 2
Query:  176 SVVFLAIGLFTNVLG---AYVGVNIGTDVSNMPSASDIVAILRANQITHVRLYDADSHMLKALSKSGIEVIVGVLNEEVLGIGEXXXXXXXWINKNVAAYMPTTNITAIAVG---SQVLTSIPNAASVLVSAMNNLHKALVASDLNFQVKISTPHSMDIIPRPFPPS 658
            + V L +  F   +G   A VGV  G   +N+P  S+++A+ + + IT +R+YD +  +L+AL  S IE+I+GV N ++  +         W+ KNV  +  +     IAVG   S V       A  ++ AM N+H A+ ++ L  Q+K+ST   + ++   +PPS
Sbjct:   18 TTVMLLLFFFAASVGITDAQVGVCYGMQGNNLPPVSEVIALYKKSNITRMRIYDPNRAVLEALRGSNIELILGVPNSDLQSL-TNPSNAKSWVQKNVRGFWSSVLFRYIAVGNEISPVNRGTAWLAQFVLPAMRNIHDAIRSAGLQDQIKVSTAIDLTLVGNSYPPS 183          
BLAST of FC920770 vs. ExPASy Swiss-Prot
Match: E13K_TOBAC (Glucan endo-1,3-beta-glucosidase, acidic isoform GL161 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.463e-15
Identity = 45/150 (30.00%), Postives = 83/150 (55.33%), Query Frame = 2
Query:  212 VLGAY-VGVNIGTDVSNMPSASDIVAILRANQITHVRLYDADSHMLKALSKSGIEVIVGVLNEEVLGIGEXXXXXXXWINKNVAAYMPTTNITAIAVGSQVL-TSIPNAASVLVSAMNNLHKALVASDLNFQVKISTPHSMDIIPRPFPP 655
            ++GA  +GV  G   +N+PS  D++ +  AN I  +R+Y  D ++ KAL+ S IE+I+GV N+++  +         W+  N+ ++ P      I++G++V  T+    +  L+ AM N++ AL A+ L   +K+ST     ++   +PP
Sbjct:    6 IIGAQSIGVCYGKAANNLPSDQDVINLYNANGIRKLRIYYPDKNIFKALNGSNIEIILGVPNQDLEALAN-SSIANGWVQDNIRSHFPYVKFKYISIGNKVSPTNNDQYSEFLLQAMKNVYNALAAAGLQDMIKVSTVTYSGVLANTYPP 154          
BLAST of FC920770 vs. ExPASy Swiss-Prot
Match: E135_ARATH (Glucan endo-1,3-beta-glucosidase 5 OS=Arabidopsis thaliana GN=At4g31140 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.463e-15
Identity = 50/166 (30.12%), Postives = 96/166 (57.83%), Query Frame = 2
Query:  155 MLVKWLGSVVFLAIGLFTNVLGAY--VGVNIGTDVSNMPSASDIVAILRANQITHVRLYDADSHMLKALSKSGIEVIVGVLNEEVLGIGEXXXXXXXWINKNVAAYMPT--TNITAIAVGSQVLTSIPNAA--SVLVSAMNNLHKALVASDLNFQVKISTPHSMDI 634
            ML K + +V F+   L+ ++L     +GVN G+   +    + +V +LR N I  V+L++ADS +LKALS++GI+V+VG+ N+ +  +         W+++NV+A++ +   +I  +AVG++      N     + + A+ N+  A++ + L  QVK++ P + D+
Sbjct:    1 MLFKGVFAVFFVITLLYASLLIEVEGIGVNWGSQARHPLPPATVVRLLRENGIQKVKLFEADSAILKALSRTGIQVMVGIPNDLLAPLAGSVAAAERWVSQNVSAHVSSNGVDIRYVAVGNEPFLKAFNGTFEGITLPALQNIQSAIIKAGLATQVKVTVPLNADV 166          
BLAST of FC920770 vs. ExPASy Swiss-Prot
Match: EA6_ARATH (Probable glucan endo-1,3-beta-glucosidase A6 OS=Arabidopsis thaliana GN=A6 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.910e-15
Identity = 45/149 (30.20%), Postives = 78/149 (52.35%), Query Frame = 2
Query:  215 LGAYVGVNIGTDVSNMPSASDIVAILRANQITHVRLYDADSHMLKALSKSGIEVIVGVLNEEVLGIGEXXXXXXXWINKNVAAYMPTTNITAIAVGSQVLTSIPNAASV-LVSAMNNLHKALVASDLNFQVKISTPHSMDIIPRPFPPS 658
            L + +G+N G   +N+PS    +  +++ +  HV+LYDAD   L  LS++ + V + V N ++  +         W+  N+  Y P T I  + VG+++L+      SV LV AM  +  +L    ++  +K+ TP +MD +   FPPS
Sbjct:   38 LASKIGINYGRRGNNLPSPYQSINFIKSIKAGHVKLYDADPESLTLLSQTNLYVTITVPNHQITALSSNQTIADEWVRTNILPYYPQTQIRFVLVGNEILSYNSGNVSVNLVPAMRKIVNSLRLHGIH-NIKVGTPLAMDSLRSSFPPS 185          
BLAST of FC920770 vs. ExPASy Swiss-Prot
Match: E13F_HORVU (Putative glucan endo-1,3-beta-glucosidase GVI (Fragment) OS=Hordeum vulgare PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.495e-15
Identity = 44/144 (30.56%), Postives = 82/144 (56.94%), Query Frame = 2
Query:  227 VGVNIGTDVSNMPSASDIVAILRANQITHVRLYDADSHMLKALSKSGIEVIVGVLNEEVLGIGEXXXXXXXWINKNVAAYMPTTNITAIAVGSQVLTSIPNAASVLVSAMNNLHKALVASDLNFQVKISTPHSMDIIPRPFPPS 658
            +GVN G   S++PS   +VA+ +AN IT VR++  D+++L+AL  SG+ V++G LN ++  +         W++  V  +    +   I  G++V+     +A++++ AM NL  AL A+ L+  V ++T  +  ++   +PPS
Sbjct:    7 IGVNYGMMGSDLPSPDKVVALYKANNITDVRIFHPDTNVLEALRNSGLGVVLGTLNSDLAPLASDASYAASWVHSYVQPFAGAVSFRYINAGNEVIPG--ESAALVLPAMKNLEAALQAAGLS--VPVTTAMATSVLGTSYPPS 146          
The following BLAST results are available for this feature:
BLAST of FC920770 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
E13B_NICPL1.013e-1631.79Glucan endo-1,3-beta-glucosidase, basic vacuolar i... [more]
E136_ARATH1.728e-1633.13Glucan endo-1,3-beta-glucosidase 6 OS=Arabidopsis ... [more]
E133_SOLTU2.257e-1634.31Glucan endo-1,3-beta-glucosidase, basic isoform 3 ... [more]
E13D_TOBAC3.849e-1629.17Glucan endo-1,3-beta-glucosidase OS=Nicotiana taba... [more]
E13C_TOBAC6.566e-1628.57Glucan endo-1,3-beta-glucosidase OS=Nicotiana taba... [more]
E13B_HEVBR8.575e-1631.14Glucan endo-1,3-beta-glucosidase, basic vacuolar i... [more]
E13K_TOBAC1.463e-1530.00Glucan endo-1,3-beta-glucosidase, acidic isoform G... [more]
E135_ARATH1.463e-1530.12Glucan endo-1,3-beta-glucosidase 5 OS=Arabidopsis ... [more]
EA6_ARATH1.910e-1530.20Probable glucan endo-1,3-beta-glucosidase A6 OS=Ar... [more]
E13F_HORVU2.495e-1530.56Putative glucan endo-1,3-beta-glucosidase GVI (Fra... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32012G12EF RVDevelop1 Citrus clementina cDNA clone C32012G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920770 ID=FC920770; Name=FC920770; organism=Citrus clementina; type=EST; length=694bp
GGAGCTCAGGCAATTTGGATCTCGCAGGACCTTGCAGTCAGCTATTGGCA
TCAAATTCCATTTTTGTGTGTTTCTGGAAGCTTTGGCAGTCTGATCTCCA
TCTTGGAGTAATTGACTGGACTGAAGGTGTAGGTTAAAGTTTGTTGGACA
GATGATGCTTGTAAAATGGCTTGGAAGTGTGGTTTTTCTTGCAATTGGCC
TCTTTACCAACGTGTTAGGTGCATATGTTGGTGTAAACATCGGAACAGAT
GTTTCCAACATGCCATCAGCTTCAGATATTGTTGCAATACTTAGAGCCAA
TCAAATTACTCACGTACGCCTTTATGACGCTGACAGTCACATGCTGAAAG
CCCTTTCAAAGAGTGGAATTGAGGTAATTGTTGGTGTACTGAATGAGGAA
GTCTTGGGTATTGGAGAATCTGCATCAGCTGCAGCAGCCTGGATTAATAA
AAATGTTGCTGCGTACATGCCTACAACTAATATTACAGCCATTGCGGTTG
GCAGTCAGGTTCTTACCTCAATCCCTAATGCTGCCTCAGTTTTGGTGTCG
GCCATGAATAACCTTCATAAAGCTCTAGTTGCTTCAGATCTAAATTTCCA
AGTCAAAATTTCAACTCCACACTCCATGGATATAATCCCAAGGCCATTCC
CCCCTTCACCGCTACATTTAATCTGCATGGAACTCTACATTTAT
back to top