FC920770

Overview
NameFC920770
Unique NameFC920770
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13387 contig Ccv1_Contig13387:377..1070. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920770 vs. ExPASy Swiss-Prot
Match: E13D_HORVU (Glucan endo-1,3-beta-glucosidase GIV OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.256e-15
Identity = 48/145 (33.10%), Postives = 78/145 (53.79%), Query Frame = 2
Query:  227 VGVNIGTDVSNMPSASDIVAILRANQITHVRLYDADSHMLKALSKSGIEVIVGVLNEEVLGIGEXXXXXXXWINKNVAAYMPT-TNITAIAVGSQVLTSIPNAASVLVSAMNNLHKALVASDLNFQVKISTPHSMDIIPRPFPPS 658
            +GV  G   +N+P   ++V + R+  IT++R+Y      ++AL  SGI +++G  N +V  +         W++ NV  Y      I  IAVG+++      AA  +++AM NL+KAL A+ L   +K+ST    D+I   FPPS
Sbjct:    1 IGVCYGIIANNLPPRREVVQLYRSKGITNMRIYSVQPQAIRALHGSGIRLMLGTTNNDVAVLAGSLSAATSWVHANVKPYHSAGVTIRYIAVGNEI---TGGAAQSILAAMRNLNKALAAARLG-GIKVSTAVRFDVITNSFPPS 141          
BLAST of FC920770 vs. ExPASy Swiss-Prot
Match: E13A_HORVU (Glucan endo-1,3-beta-glucosidase GI OS=Hordeum vulgare PE=1 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 5.558e-15
Identity = 52/145 (35.86%), Postives = 75/145 (51.72%), Query Frame = 2
Query:  227 VGVNIGTDVSNMPSASDIVAILRANQITHVRLYDADSHMLKALSKSGIEVIVGVLNEEVL-GIGEXXXXXXXWINKNVAAYMPTTNITAIAVGSQVLTSIPNAASVLVSAMNNLHKALVASDLNFQVKISTPHSMDIIPRPFPPS 658
            +GV  G   +N+P A+++V + R+N +T +R+Y AD+  L AL  SGI +I+ V   +VL  +         W+  NV  Y P  NI  IA G++V          +V AM NL  AL A  L   +K+ST    D +   FPPS
Sbjct:    2 IGVCYGVVANNLPPANEVVQLYRSNGLTGMRIYFADAKALSALRGSGIGLILDVGGNDVLASLAANASNAANWVRDNVRPYYPAVNIKYIAAGNEVW---GGDTQNIVPAMRNLGAALKAPGLG-TIKVSTSIRFDAVTNTFPPS 142          
BLAST of FC920770 vs. ExPASy Swiss-Prot
Match: E13H_TOBAC (Glucan endo-1,3-beta-glucosidase, acidic isoform PR-Q' OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.481e-15
Identity = 55/174 (31.61%), Postives = 86/174 (49.43%), Query Frame = 2
Query:  143 VGQMMLVKWLGSVVFLAIGLFTNVLGAYVGVNIGTDVSNMPSASDIVAILRANQITHVRLYDADSHMLKALSKSGIEVIVGVLNEEVLGIGEXXXXXXXWINKNVAAYMPTTNITAIAVGSQV--LTSIPNAASVLVSAMNNLHKALVASDLNFQVKISTPHSMDIIPRPFPPS 658
            +  +++   L SV+ LA   FT   GA  GV  G   + +PS +D+V++   N I  +R+YD D   L+AL  S IE+++GV N ++  +         W+  NV  Y        IAVG++V  L        VL++AM N+  A+  + L  Q+K+ST     +     PPS
Sbjct:    1 MAHLIVTLLLLSVLTLATLDFT---GAQAGVCYGRQGNGLPSPADVVSLCNRNNIRRMRIYDPDQPTLEALRGSNIELMLGVPNPDLENVAASQANADTWVQNNVRNY-GNVKFRYIAVGNEVSPLNENSKYVPVLLNAMRNIQTAISGAGLGNQIKVSTAIETGLTTDTSPPS 170          
BLAST of FC920770 vs. ExPASy Swiss-Prot
Match: E13L_TOBAC (Glucan endo-1,3-beta-glucosidase, acidic isoform GL153 OS=Nicotiana tabacum GN=GGL4 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.112e-14
Identity = 43/145 (29.66%), Postives = 80/145 (55.17%), Query Frame = 2
Query:  227 VGVNIGTDVSNMPSASDIVAILRANQITHVRLYDADSHMLKALSKSGIEVIVGVLNEEVLGIGEXXXXXXXWINKNVAAYMPTTNITAIAVGSQVLTSIPNA--ASVLVSAMNNLHKALVASDLNFQVKISTPHSMDIIPRPFPP 655
            +GV  G   +N+PS  D++ + +AN I  +R+Y  D ++ KAL  S IE+I+ V N+++  +         W+  N+ ++ P      I++G++V + I N   +  L+ AM N++ AL AS L  ++K++T     ++   +PP
Sbjct:   32 IGVCYGKIANNLPSEQDVINLYKANGIRKMRIYYPDKNIFKALKGSNIEIILDVPNQDLEALAN-SSIANGWVQDNIRSHFPYVKFKYISIGNEV-SPINNGQYSQFLLHAMENVYNALAASGLQDKIKVTTATYSGLLANTYPP 174          
BLAST of FC920770 vs. ExPASy Swiss-Prot
Match: E13A_SOLLC (Glucan endo-1,3-beta-glucosidase A OS=Solanum lycopersicum PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.758e-14
Identity = 45/159 (28.30%), Postives = 83/159 (52.20%), Query Frame = 2
Query:  188 LAIGLFTNVLGAY-VGVNIGTDVSNMPSASDIVAILRANQITHVRLYDADSHMLKALSKSGIEVIVGVLNEEVLGIGEXXXXXXXWINKNVAAYMPTTNITAIAVGSQVLTSIPNA--ASVLVSAMNNLHKALVASDLNFQVKISTPHSMDIIPRPFPP 655
            L +GL   + GA  +GV  G   +N+PS  D++ +  +N I  +R+Y  ++++  AL  S IE+I+ V N+++  +         W+  N+  + P      IAVG++V     +   A  +  AM N++ AL ++ L  Q+K+ST   + ++   +PP
Sbjct:   12 LLVGLLIQITGAQPIGVCYGKIANNLPSDQDVIKLYNSNNIKKMRIYFPETNVFNALKGSNIEIILDVPNQDLEALAN-PSKRQGWVQDNIRNHFPDVKFKYIAVGNEVDPGRDSGKYARFVGPAMENIYNALSSAGLQNQIKVSTATYLGLLTNTYPP 169          
BLAST of FC920770 vs. ExPASy Swiss-Prot
Match: E13B_PRUPE (Glucan endo-1,3-beta-glucosidase, basic isoform OS=Prunus persica GN=GNS1 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.603e-14
Identity = 49/147 (33.33%), Postives = 78/147 (53.06%), Query Frame = 2
Query:  218 GAYVGVNIGTDVSNMPSASDIVAILRANQITHVRLYDADSHMLKALSKSGIEVIVGVLNEEVLGIGEXXXXXXXWINKNVAAYMPTTNITAIAVGSQVLTSIPNAASVLVSAMNNLHKALVASDLNFQVKISTPHSMDIIPRPFPPS 658
            GA +GV  G    ++P  +++VA+ + N I  +RLYD +   L+AL  S I++++GV NE +  I         W+  NV  Y        IAVG++V  S  + A  LV AM N+ +A+  + L  ++K+ST     ++   FPPS
Sbjct:   37 GAPIGVCNGMVGDDLPPQAEVVALYKTNNIPRMRLYDPNPAALEALRGSNIKLLLGVPNENLQYIALSQANANAWVQNNVRNY-ANVKFKYIAVGNEVKPS-DSFAQFLVPAMRNIQEAISLAGLAKKIKVSTAIDTGVLGETFPPS 181          
BLAST of FC920770 vs. ExPASy Swiss-Prot
Match: GUB2_HORVU (Lichenase-2 (Fragment) OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.615e-14
Identity = 48/144 (33.33%), Postives = 77/144 (53.47%), Query Frame = 2
Query:  227 VGVNIGTDVSNMPSASDIVAILRANQITHVRLYDADSHMLKALSKSGIEVIVGVLNEEVLGIGEXXXXXXXWINKNVAAYMPTTNITAIAVGSQVLTSIPNAASVLVSAMNNLHKALVASDLNFQVKISTPHSMDIIPRPFPPS 658
            +GV  G   +N+P+AS +V++ + N I  +RLY  +   L+A+  +GI V+VG  N+ +  +         W+  N+ AY P  +   + VG++V      A   LV AM N+H ALVA+ L   +K++T  S  I+    PPS
Sbjct:    7 IGVCYGMSANNLPAASTVVSMFKFNGIKSMRLYAPNQAALQAVGGTGINVVVGAPNDVLSNLAASPAAAASWVKSNIQAY-PKVSFRYVCVGNEV---AGGATRNLVPAMKNVHGALVAAGLG-HIKVTTSVSQAILGVFSPPS 145          

HSP 2 Score: 20.7866 bits (42), Expect = 3.615e-14
Identity = 9/19 (47.37%), Postives = 11/19 (57.89%), Query Frame = 1
Query:  631 YNPKAIPPFTATFNLHGTL 687
            YNP A+    A FN  GT+
Sbjct:  183 YNPSAMDMGYALFNASGTV 201          
BLAST of FC920770 vs. ExPASy Swiss-Prot
Match: E13G_TOBAC (Glucan endo-1,3-beta-glucosidase, acidic isoform GI9 OS=Nicotiana tabacum GN=PR2 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.788e-13
Identity = 43/144 (29.86%), Postives = 76/144 (52.78%), Query Frame = 2
Query:  227 VGVNIGTDVSNMPSASDIVAILRANQITHVRLYDADSHMLKALSKSGIEVIVGVLNEEVLGIGEXXXXXXXWINKNVAAYMPTTNITAIAVGSQVLT-SIPNAASVLVSAMNNLHKALVASDLNFQVKISTPHSMDIIPRPFPP 655
            +GV  G   +N+PS  D++ +  AN I  +R+Y+ D+++  AL  S IE+I+ V  +++  + +       W+  N+  + P      IAVG++V   +    A  +  AM N++ AL A+ L  Q+K+ST     I+   +PP
Sbjct:   32 IGVCYGKHANNLPSDQDVINLYNANGIRKMRIYNPDTNVFNALRGSNIEIILDVPLQDLQSLTD-PSRANGWVQDNIINHFPDVKFKYIAVGNEVSPGNNGQYAPFVAPAMQNVYNALAAAGLQDQIKVSTATYSGILANTYPP 174          
BLAST of FC920770 vs. ExPASy Swiss-Prot
Match: E13A_SOYBN (Glucan endo-1,3-beta-glucosidase OS=Glycine max PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.202e-13
Identity = 42/159 (26.42%), Postives = 77/159 (48.43%), Query Frame = 2
Query:  182 VFLAIGLFTNVLGAYVGVNIGTDVSNMPSASDIVAILRANQITHVRLYDADSHMLKALSKSGIEVIVGVLNEEVLGIGEXXXXXXXWINKNVAAYMPTTNITAIAVGSQVLTSIPNAASVLVSAMNNLHKALVASDLNFQVKISTPHSMDIIPRPFPPS 658
            +F+ +  +T    A  GV  G   +N+P+  ++VA+     I  +R+Y     +L+AL  S IE+++ + N+ +  +         W+  N+  Y        ++VG++V     + A  LV A+ N+ +A+  + L  QVK+ST      +   FPPS
Sbjct:   19 LFILLITYTGTTDAQSGVCYGRLGNNLPTPQEVVALYNQANIRRMRIYGPSPEVLEALRGSNIELLLDIPNDNLRNLASSQDNANKWVQDNIKNYANNVRFRYVSVGNEVKPE-HSFAQFLVPALENIQRAISNAGLGNQVKVSTAIDTGALAESFPPS 176          
BLAST of FC920770 vs. ExPASy Swiss-Prot
Match: E139_ARATH (Glucan endo-1,3-beta-glucosidase 9 OS=Arabidopsis thaliana GN=At5g58480 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.202e-13
Identity = 48/140 (34.29%), Postives = 74/140 (52.86%), Query Frame = 2
Query:  227 VGVNIGTDVSNMPSASDIVAILRANQITHVRLYDADSHMLKALSKSGIEVIVGVLNEEVLGIGEXXXXXXXWINKNVAAYMPTTN---ITAIAVGSQ-VLTSIPNA-ASVLVSAMNNLHKALVASDLNFQVKISTPHSMD 631
            VG+N GT+ S+    S +V +L++N I  V+L+DAD  +L+ALS S I V +G+ N  +  +         W++ NV  Y    N   I  +AVG +  L S  N     ++ A  N+  ALV ++L  +VK+  P S D
Sbjct:   26 VGINWGTEASHPLPPSKVVELLKSNGIVKVKLFDADPKVLRALSGSNIGVTIGIQNSMLKSLNASVKVAESWVHDNVTRYFNGGNRVRIEYVAVGEEPFLQSYGNQYKPFVIGAAMNIQNALVKANLANEVKVVVPSSFD 165          
The following BLAST results are available for this feature:
BLAST of FC920770 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
E13D_HORVU4.256e-1533.10Glucan endo-1,3-beta-glucosidase GIV OS=Hordeum vu... [more]
E13A_HORVU5.558e-1535.86Glucan endo-1,3-beta-glucosidase GI OS=Hordeum vul... [more]
E13H_TOBAC9.481e-1531.61Glucan endo-1,3-beta-glucosidase, acidic isoform P... [more]
E13L_TOBAC2.112e-1429.66Glucan endo-1,3-beta-glucosidase, acidic isoform G... [more]
E13A_SOLLC2.758e-1428.30Glucan endo-1,3-beta-glucosidase A OS=Solanum lyco... [more]
E13B_PRUPE3.603e-1433.33Glucan endo-1,3-beta-glucosidase, basic isoform OS... [more]
GUB2_HORVU3.615e-1433.33Lichenase-2 (Fragment) OS=Hordeum vulgare PE=1 SV=... [more]
E13G_TOBAC1.788e-1329.86Glucan endo-1,3-beta-glucosidase, acidic isoform G... [more]
E13A_SOYBN5.202e-1326.42Glucan endo-1,3-beta-glucosidase OS=Glycine max PE... [more]
E139_ARATH5.202e-1334.29Glucan endo-1,3-beta-glucosidase 9 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionC32012G12EF RVDevelop1 Citrus clementina cDNA clone C32012G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920770 ID=FC920770; Name=FC920770; organism=Citrus clementina; type=EST; length=694bp
GGAGCTCAGGCAATTTGGATCTCGCAGGACCTTGCAGTCAGCTATTGGCA
TCAAATTCCATTTTTGTGTGTTTCTGGAAGCTTTGGCAGTCTGATCTCCA
TCTTGGAGTAATTGACTGGACTGAAGGTGTAGGTTAAAGTTTGTTGGACA
GATGATGCTTGTAAAATGGCTTGGAAGTGTGGTTTTTCTTGCAATTGGCC
TCTTTACCAACGTGTTAGGTGCATATGTTGGTGTAAACATCGGAACAGAT
GTTTCCAACATGCCATCAGCTTCAGATATTGTTGCAATACTTAGAGCCAA
TCAAATTACTCACGTACGCCTTTATGACGCTGACAGTCACATGCTGAAAG
CCCTTTCAAAGAGTGGAATTGAGGTAATTGTTGGTGTACTGAATGAGGAA
GTCTTGGGTATTGGAGAATCTGCATCAGCTGCAGCAGCCTGGATTAATAA
AAATGTTGCTGCGTACATGCCTACAACTAATATTACAGCCATTGCGGTTG
GCAGTCAGGTTCTTACCTCAATCCCTAATGCTGCCTCAGTTTTGGTGTCG
GCCATGAATAACCTTCATAAAGCTCTAGTTGCTTCAGATCTAAATTTCCA
AGTCAAAATTTCAACTCCACACTCCATGGATATAATCCCAAGGCCATTCC
CCCCTTCACCGCTACATTTAATCTGCATGGAACTCTACATTTAT
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