FC920774

Overview
NameFC920774
Unique NameFC920774
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig886 contig Ccv1_Contig886:15..726. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920774 vs. ExPASy Swiss-Prot
Match: API8_SOLTU (Aspartic protease inhibitor 8 OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.054e-11
Identity = 60/202 (29.70%), Postives = 94/202 (46.53%), Query Frame = 2
Query:   83 QPLLGISSNS---EPVLDIIGNKVKSTLEYKLIPVLDGAGGFSTHLG----TNGQCPLDVIQLSSP-SERGDNLRLLPYDNYKIVKVSTDVNLRFPVKVSVKPCNEEPLWKVDS----YDDPLIVTGGSEGHPGAETLLNWFKIEKAGNFSYGGVYNIVHCPSVCLSC--PRRCNRIGVSTKDGVRRLLLVGDHEPAFDVLF 646
            Q L+ + S S   +PVLD  G ++     Y++I +  GA G   +LG    ++  CP  V + +S     G  +R +P           ++    P   +VK C    +WKV +    +   L+ TGG+ G   +    ++FKI K  NF Y  +Y  +  P +C  C     C ++GV  ++G RRL LV  +E   DVLF
Sbjct:   25 QNLIDLPSESPLPKPVLDTNGKELNPDSSYRIISIGRGALGGDVYLGKSPNSDAPCPDGVFRYNSDVGPSGTPVRFIPLSGGIFEDQLLNIQFNIP---TVKLCVSYTIWKVGNLNAYFRTMLLETGGTIGQADS----SYFKIVKLSNFGYNLLYCPITPPFLCPFCRDDNFCAKVGVVIQNGKRRLALV--NENPLDVLF 217          
BLAST of FC920774 vs. ExPASy Swiss-Prot
Match: SPI5_SOLTU (Serine protease inhibitor 5 OS=Solanum tuberosum PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.601e-11
Identity = 54/188 (28.72%), Postives = 94/188 (50.00%), Query Frame = 2
Query:   92 LGISSNSEPVLDIIGNKVKSTLEYKLIPVLDGAGGFSTHLG----TNGQCPLDVIQLSSP-SERGDNLRLLPYDNY--KIVKVSTDVNLRFPVKVSVKPCNEEPLWKVDSYD----DPLIVTGGSEGHPGAETLLNWFKIEKAGNFSYGGVYNIVHCPSVCLSCPRRCNRIGVSTKDGVRRLLLVGDH 622
            + + S++ PVLD+ G ++   L Y++I +  GA G   +LG    ++  C   V + +S     G  +R +   ++    +     +N++F +  +VK C    +WKV  YD      L+ TGG+ G   +    +WFKI K+        YN+++CP    S  + C ++GV  ++G RRL LV D+
Sbjct:   27 INLPSDATPVLDVTGKELDPRLSYRIISIGRGALGGDVYLGKSPNSDAPCANGVFRFNSDVGPSGTPVRFIGSSSHFGPHIFEGELLNIQFDIS-TVKLCVSYTIWKVGDYDASLGTMLLETGGTIGQADS----SWFKIVKSSQLG----YNLLYCP--FSSDDQFCLKVGVVHQNGKRRLALVKDN 203          
The following BLAST results are available for this feature:
BLAST of FC920774 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
API8_SOLTU5.054e-1129.70Aspartic protease inhibitor 8 OS=Solanum tuberosum... [more]
SPI5_SOLTU6.601e-1128.72Serine protease inhibitor 5 OS=Solanum tuberosum P... [more]

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Properties
Property NameValue
Genbank descriptionC32012H04EF RVDevelop1 Citrus clementina cDNA clone C32012H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920774 ID=FC920774; Name=FC920774; organism=Citrus clementina; type=EST; length=712bp
CAGCAGCCAGCCTTTCAGTGGCAAAAAAATGAAGACTTCATTGATAACAA
CACTCTCCTTCCTTATCCTTACCTTGCCCACGCAGCCTCTATTGGGCATC
TCATCAAACTCTGAACCTGTCTTAGATATCATTGGCAACAAGGTCAAATC
CACCCTCGAGTATAAACTTATCCCAGTCCTAGATGGCGCCGGTGGATTCA
GCACACACCTAGGCACAAATGGACAGTGTCCCTTGGACGTTATCCAATTA
AGTTCTCCTAGCGAAAGGGGAGATAATTTAAGATTACTTCCGTACGACAA
TTACAAAATTGTCAAGGTATCCACTGATGTCAACCTGAGATTCCCCGTAA
AAGTTTCTGTTAAGCCCTGTAATGAAGAACCATTGTGGAAAGTTGATAGC
TATGACGATCCATTAATTGTAACCGGCGGAAGTGAGGGCCACCCAGGAGC
TGAAACGTTGCTAAATTGGTTTAAGATTGAGAAAGCTGGAAATTTTTCAT
ATGGTGGTGTATACAATATTGTCCATTGTCCGAGTGTCTGTCTATCTTGT
CCTAGACGCTGCAACAGAATTGGCGTTTCAACTAAGGATGGCGTTCGACG
TCTGCTTCTAGTTGGTGATCATGAACCCGCCTTTGATGTTCTGTTTTTTC
CATCAGAAGAAAGCTCAAGGCTACTTCAAGCCTGCTACGCAATATCAAGG
TTTTTTGAAGCT
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