FC920781

Overview
NameFC920781
Unique NameFC920781
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length778
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920781_ssr32 microsatellite FC920781_ssr32:32..47. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14439 contig Ccv1_Contig14439:1..773. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC920781 vs. ExPASy Swiss-Prot
Match: SAP7_ARATH (Zinc finger A20 and AN1 domain-containing stress-associated protein 7 OS=Arabidopsis thaliana GN=SAP7 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.385e-14
Identity = 41/128 (32.03%), Postives = 72/128 (56.25%), Query Frame = 3 
Query:  249 PPEGPILCINNCGFFGSVATMNMCSKCYKDIMLKQDQAKLAASSIGSIVNETSSSNGSESVAAATVDVQASSVEPKIISVQPS---CASELSESVEAKPKEGPSRCSSCKKRVGLQDSNVAXGTYTVC 623
            PP  P LC N CGFFGS + MN+CSKCY+ +  ++DQ  +A +++ + +   S S  +       ++++ + +E  +++ +PS    A+E  E+  ++P    +RC SC K+VG+       G+ T C
Sbjct:   12 PPTEPKLCDNGCGFFGSPSNMNLCSKCYRSLRAEEDQTAVAKAAVKNSLKLPSCSIIAPG-QKHPLEIKPAHLETVVVTAEPSSVPVAAEQDEAEPSRPVRPNNRCFSCNKKVGVMGFKCKCGS-TFC 137
[Close]
BLAST of FC920781 vs. ExPASy Swiss-Prot
Match: SAP1_ARATH (Zinc finger A20 and AN1 domain-containing stress-associated protein 1 OS=Arabidopsis thaliana GN=SAP1 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.540e-11
Identity = 40/124 (32.26%), Postives = 56/124 (45.16%), Query Frame = 3 
Query:  252 PEGPILCINNCGFFGSVATMNMCSKCYKDIMLKQDQAKLAASSIGSIVNETSSSNGSESVAAATVDVQASSVEPKIISVQPSCASELSESVEAKPKEGPSRCSSCKKRVGLQDSNVAXGTYTVC 623
            P  P LC+  CGFFGS + MN+CSKCY+DI   ++Q   A +++   +N        +     T  V  S           S A+ L       PK   +RC SC K+VG+       G+ T C
Sbjct:   13 PSEPKLCVKGCGFFGSPSNMNLCSKCYRDIRATEEQTASAKAAVEKSLNPNKPKTQPQQSQEITQGVLGSGSSSSSTRGGDSAAAPLD-----PPKSTATRCLSCNKKVGVTGFKCRCGS-TFC 130
The following BLAST results are available for this feature:
BLAST of FC920781 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
SAP7_ARATH7.385e-1432.03Zinc finger A20 and AN1 domain-containing stress-a... [more]
SAP1_ARATH1.540e-1132.26Zinc finger A20 and AN1 domain-containing stress-a... [more]

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Properties
Property NameValue
Genbank descriptionC32013A02EF RVDevelop1 Citrus clementina cDNA clone C32013A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920781 ID=FC920781; Name=FC920781; organism=Citrus clementina; type=EST; length=778bp
CCCCCGGGGGAAGACTTTTTAAAAAAATCTTGAGAGAGAGAGAGAGACAC
CCGGAAAGGGAAACGAGGACGTCTCTAATCGGTTTTTGCCTGCTCTCTCC
CCGTAGGCCGATCTGGTCCATTTAATTTTAGGGGCTCATTGGATGCTGGC
TTGAGCTCGGGGATCGGCTTAAGGGATTCATTGCTGTTTCTTCTGTTGCT
CGCAGGGGTGGTGAAAACATGGACCATGATGAGACTGGATGCCAAGCTCC
TCCTGAGGGCCCTATCTTGTGCATCAACAATTGTGGTTTCTTTGGAAGTG
TGGCTACTATGAATATGTGTTCCAAATGCTACAAGGATATAATGCTGAAA
CAGGATCAAGCTAAGCTTGCTGCTTCATCTATTGGAAGCATTGTGAATGA
AACGTCAAGCAGCAATGGAAGTGAATCTGTTGCTGCTGCCACTGTTGATG
TGCAAGCTAGTTCAGTGGAGCCAAAAATCATCTCTGTGCAGCCATCATGT
GCTTCAGAATTGAGCGAGAGTGTGGAGGCAAAGCCGAAGGAGGGTCCCAG
CCGGTGTAGCAGTTGCAAGAAGCGTGTTGGTTTACAGGATTCAAATGTCG
CTGNTGGTACTTATACTGTGTGTCACATCGCTATTCGGAACAACATAACT
GCCCCTTTGACTACCGCACTGCTGCTAGGGATGCTATAATTAAAGCAACC
CTGTGATCAGGCTGAGAAGCTAGATAAATCTAGATCAATGGATGAGGTTC
AATATCAAGATGATGACTTGCTCATCTG
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