FC920782

Overview
NameFC920782
Unique NameFC920782
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length691
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920782 vs. ExPASy Swiss-Prot
Match: MSRA_BRUSU (Peptide methionine sulfoxide reductase msrA OS=Brucella suis GN=msrA PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.216e-19
Identity = 42/80 (52.50%), Postives = 51/80 (63.75%), Query Frame = 1
Query:  442 GQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDP 681
            G +   FG GCFWG E  F +VPGV  T VGY+ G   NP+YE+ C+G T H EVV V YDPK  + + LL +FW  HDP
Sbjct:   47 GMKQVLFGMGCFWGAERLFWQVPGVYVTAVGYAGGITPNPTYEETCTGLTGHAEVVLVVYDPKVVTLNELLALFWEEHDP 126          
BLAST of FC920782 vs. ExPASy Swiss-Prot
Match: MSRA_BRUSI (Peptide methionine sulfoxide reductase msrA OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=msrA PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.216e-19
Identity = 42/80 (52.50%), Postives = 51/80 (63.75%), Query Frame = 1
Query:  442 GQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDP 681
            G +   FG GCFWG E  F +VPGV  T VGY+ G   NP+YE+ C+G T H EVV V YDPK  + + LL +FW  HDP
Sbjct:   47 GMKQVLFGMGCFWGAERLFWQVPGVYVTAVGYAGGITPNPTYEETCTGLTGHAEVVLVVYDPKVVTLNELLALFWEEHDP 126          
BLAST of FC920782 vs. ExPASy Swiss-Prot
Match: MSRA_BRUO2 (Peptide methionine sulfoxide reductase msrA OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=msrA PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.216e-19
Identity = 42/80 (52.50%), Postives = 51/80 (63.75%), Query Frame = 1
Query:  442 GQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDP 681
            G +   FG GCFWG E  F +VPGV  T VGY+ G   NP+YE+ C+G T H EVV V YDPK  + + LL +FW  HDP
Sbjct:   47 GMKQVLFGMGCFWGAERLFWQVPGVYVTAVGYAGGITPNPTYEETCTGLTGHAEVVLVVYDPKVVTLNELLALFWEEHDP 126          
BLAST of FC920782 vs. ExPASy Swiss-Prot
Match: MSRA_BRUME (Peptide methionine sulfoxide reductase msrA OS=Brucella melitensis GN=msrA PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.216e-19
Identity = 42/80 (52.50%), Postives = 51/80 (63.75%), Query Frame = 1
Query:  442 GQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDP 681
            G +   FG GCFWG E  F +VPGV  T VGY+ G   NP+YE+ C+G T H EVV V YDPK  + + LL +FW  HDP
Sbjct:   47 GMKQVLFGMGCFWGAERLFWQVPGVYVTAVGYAGGITPNPTYEETCTGLTGHAEVVLVVYDPKVVTLNELLALFWEEHDP 126          
BLAST of FC920782 vs. ExPASy Swiss-Prot
Match: MSRA_BRUMB (Peptide methionine sulfoxide reductase msrA OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=msrA PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.216e-19
Identity = 42/80 (52.50%), Postives = 51/80 (63.75%), Query Frame = 1
Query:  442 GQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDP 681
            G +   FG GCFWG E  F +VPGV  T VGY+ G   NP+YE+ C+G T H EVV V YDPK  + + LL +FW  HDP
Sbjct:   47 GMKQVLFGMGCFWGAERLFWQVPGVYVTAVGYAGGITPNPTYEETCTGLTGHAEVVLVVYDPKVVTLNELLALFWEEHDP 126          
BLAST of FC920782 vs. ExPASy Swiss-Prot
Match: MSRA_BRUC2 (Peptide methionine sulfoxide reductase msrA OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=msrA PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.216e-19
Identity = 42/80 (52.50%), Postives = 51/80 (63.75%), Query Frame = 1
Query:  442 GQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDP 681
            G +   FG GCFWG E  F +VPGV  T VGY+ G   NP+YE+ C+G T H EVV V YDPK  + + LL +FW  HDP
Sbjct:   47 GMKQVLFGMGCFWGAERLFWQVPGVYVTAVGYAGGITPNPTYEETCTGLTGHAEVVLVVYDPKVVTLNELLALFWEEHDP 126          
BLAST of FC920782 vs. ExPASy Swiss-Prot
Match: MSRA_BRUAB (Peptide methionine sulfoxide reductase msrA OS=Brucella abortus GN=msrA PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.216e-19
Identity = 42/80 (52.50%), Postives = 51/80 (63.75%), Query Frame = 1
Query:  442 GQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDP 681
            G +   FG GCFWG E  F +VPGV  T VGY+ G   NP+YE+ C+G T H EVV V YDPK  + + LL +FW  HDP
Sbjct:   47 GMKQVLFGMGCFWGAERLFWQVPGVYVTAVGYAGGITPNPTYEETCTGLTGHAEVVLVVYDPKVVTLNELLALFWEEHDP 126          
BLAST of FC920782 vs. ExPASy Swiss-Prot
Match: MSRA_BRUA2 (Peptide methionine sulfoxide reductase msrA OS=Brucella abortus (strain 2308) GN=msrA PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.216e-19
Identity = 42/80 (52.50%), Postives = 51/80 (63.75%), Query Frame = 1
Query:  442 GQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDP 681
            G +   FG GCFWG E  F +VPGV  T VGY+ G   NP+YE+ C+G T H EVV V YDPK  + + LL +FW  HDP
Sbjct:   47 GMKQVLFGMGCFWGAERLFWQVPGVYVTAVGYAGGITPNPTYEETCTGLTGHAEVVLVVYDPKVVTLNELLALFWEEHDP 126          
BLAST of FC920782 vs. ExPASy Swiss-Prot
Match: MSRA_BRUA1 (Peptide methionine sulfoxide reductase msrA OS=Brucella abortus (strain S19) GN=msrA PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.216e-19
Identity = 42/80 (52.50%), Postives = 51/80 (63.75%), Query Frame = 1
Query:  442 GQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDP 681
            G +   FG GCFWG E  F +VPGV  T VGY+ G   NP+YE+ C+G T H EVV V YDPK  + + LL +FW  HDP
Sbjct:   47 GMKQVLFGMGCFWGAERLFWQVPGVYVTAVGYAGGITPNPTYEETCTGLTGHAEVVLVVYDPKVVTLNELLALFWEEHDP 126          
BLAST of FC920782 vs. ExPASy Swiss-Prot
Match: MSRA2_ANASP (Peptide methionine sulfoxide reductase msrA 2 OS=Anabaena sp. (strain PCC 7120) GN=msrA2 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.216e-19
Identity = 51/121 (42.15%), Postives = 68/121 (56.20%), Query Frame = 1
Query:  355 GFGFR---PSPDPASTENSAIAQGPDDDV--------PAP-GQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDP 681
            GFG +   P+P+ A    + I   P +          P P G + A FG GCFWG E  F +  GV  T VGY+ G+  NP+Y++VC+G T HNEVV V +DPK  S+  LL +FW  H+P
Sbjct:    5 GFGKKLALPTPEKALPGRAQIMPVPANHYVNKNPLKPPFPDGFEKALFGLGCFWGAERKFWQQQGVYSTAVGYAAGFTPNPTYDEVCTGLTGHNEVVLVVFDPKVISYTQLLKVFWESHNP 125          
The following BLAST results are available for this feature:
BLAST of FC920782 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 270
Match NameE-valueIdentityDescription
MSRA_BRUSU8.216e-1952.50Peptide methionine sulfoxide reductase msrA OS=Bru... [more]
MSRA_BRUSI8.216e-1952.50Peptide methionine sulfoxide reductase msrA OS=Bru... [more]
MSRA_BRUO28.216e-1952.50Peptide methionine sulfoxide reductase msrA OS=Bru... [more]
MSRA_BRUME8.216e-1952.50Peptide methionine sulfoxide reductase msrA OS=Bru... [more]
MSRA_BRUMB8.216e-1952.50Peptide methionine sulfoxide reductase msrA OS=Bru... [more]
MSRA_BRUC28.216e-1952.50Peptide methionine sulfoxide reductase msrA OS=Bru... [more]
MSRA_BRUAB8.216e-1952.50Peptide methionine sulfoxide reductase msrA OS=Bru... [more]
MSRA_BRUA28.216e-1952.50Peptide methionine sulfoxide reductase msrA OS=Bru... [more]
MSRA_BRUA18.216e-1952.50Peptide methionine sulfoxide reductase msrA OS=Bru... [more]
MSRA2_ANASP8.216e-1942.15Peptide methionine sulfoxide reductase msrA 2 OS=A... [more]

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Properties
Property NameValue
Genbank descriptionC32013A03EF RVDevelop1 Citrus clementina cDNA clone C32013A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920782 ID=FC920782; Name=FC920782; organism=Citrus clementina; type=EST; length=691bp
TTGGAAAAATGGTCAGAGAATGAGGGAGTAATAATATTTTAATTTAAAGT
AGCTTGAAAAAAAATTCAATCTAACCTCGATTGAGCAAATCGACACGAGG
TAACTGAATTTTCTCAACACGTCTCCAAATCTTTAAAACCAGCAATGGTC
TTAAACAAGTGTCTTTCCATAACCACCACCACCACCACCGTCGCCGCTAC
CATCTCCAAATCGCCACTTCTTCTAATCTCCTCTTCTCTCTCTTCACCAA
AGAACCCTCTTTCTCTCTCTAAACCCAATTTTTCCCATTTCCCTATCACT
GCCCGACCCATTTCCACCCACTACAAGCCCCCCATGAACATCCTCAACAA
GCTCGGCTTCGGCTTCAGGCCCAGCCCCGACCCCGCGTCCACGGAGAACT
CCGCCATCGCTCAGGGCCCCGACGACGACGTTCCGGCCCCCGGTCAGCAG
TTTGCCCAGTTCGGCGCTGGCTGCTTTTGGGGCGTCGAATTGGCGTTCCA
GAGAGTGCCAGGTGTCACCAAGACCGAAGTTGGGTACAGCCAAGGCTACT
TGCATAACCCTAGCTACGAGGACGTGTGCAGTGGGACTACCAATCATAAT
GAAGTTGTTAGGGTTCAGTATGATCCTAAGGAGTGTAGTTTCGATACTTT
GCTTGATATGTTTTGGGCTCGCCATGATCCTCCCACGCTTA
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