FC920782

Overview
NameFC920782
Unique NameFC920782
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length691
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920782 vs. ExPASy Swiss-Prot
Match: MSRA_MYCPN (Peptide methionine sulfoxide reductase msrA OS=Mycoplasma pneumoniae GN=msrA PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.735e-14
Identity = 36/74 (48.65%), Postives = 45/74 (60.81%), Query Frame = 1
Query:  460 FGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDP 681
            FG GCFWG +  F  + GV KT VGY    + NP+YE VCSG TN  E V V+YD  + S + L+D F+   DP
Sbjct:    6 FGGGCFWGTQKYFDLIKGVQKTSVGYLNSNMKNPTYEQVCSGQTNAVEAVFVEYDENKVSLNELIDAFFKVIDP 79          
BLAST of FC920782 vs. ExPASy Swiss-Prot
Match: MSRA_ARTCA (Peptide methionine sulfoxide reductase msrA OS=Arthrobacter chlorophenolicus (strain A6 / ATCC 700700 / DSM 12829 / JCM 12360) GN=msrA PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.735e-14
Identity = 36/76 (47.37%), Postives = 47/76 (61.84%), Query Frame = 1
Query:  463 GAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPPTL 690
            G GCFW ++  +Q+  GVT    GY+ G+   P Y  VCSGTT H EVV V +D +    + +LDMF+A HDP TL
Sbjct:    7 GGGCFWCLDAVYQKTKGVTAVVSGYTGGHDPYPDYYSVCSGTTGHAEVVAVTFDEEIIPAEVILDMFFALHDPTTL 82          
BLAST of FC920782 vs. ExPASy Swiss-Prot
Match: MSRA_UREU1 (Peptide methionine sulfoxide reductase msrA OS=Ureaplasma urealyticum serovar 10 (strain ATCC 33699 / Western) GN=msrA PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.572e-14
Identity = 36/74 (48.65%), Postives = 48/74 (64.86%), Query Frame = 1
Query:  469 GCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPPTL 690
            GCFWG++  F  + GV  T VGYSQG + NPSYE VC+ TTNH E V+V YD +  S  ++L+  +   DP +L
Sbjct:   10 GCFWGIQKYFDSIKGVRHTIVGYSQGNVINPSYEQVCTQTTNHTETVQVDYDDRFVSLTSILEHLYQIIDPFSL 83          
BLAST of FC920782 vs. ExPASy Swiss-Prot
Match: MSRA_STRP1 (Peptide methionine sulfoxide reductase msrA OS=Streptococcus pyogenes serotype M1 GN=msrA PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.572e-14
Identity = 31/76 (40.79%), Postives = 47/76 (61.84%), Query Frame = 1
Query:  454 AQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDP 681
            A F  GCFW +   F+   G+     GY+ G+L NPSYE VC+ TT H E V + +DPK+ ++  L++++W + DP
Sbjct:    4 AIFAGGCFWCMVQPFEEQAGILSVRSGYTGGHLPNPSYEQVCAKTTGHTEAVEIIFDPKQIAYKDLVELYWTQTDP 79          
BLAST of FC920782 vs. ExPASy Swiss-Prot
Match: MSRA_LISMO (Peptide methionine sulfoxide reductase msrA OS=Listeria monocytogenes GN=msrA PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.572e-14
Identity = 30/76 (39.47%), Postives = 48/76 (63.16%), Query Frame = 1
Query:  454 AQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDP 681
            A F  GCFW +   F   PG+ K   GY+ G+  NP+Y++VCSGTT H E +++ +DP    ++ L++++W + DP
Sbjct:    9 ATFAGGCFWCMVKPFDTQPGIEKVVSGYTGGHTVNPTYKEVCSGTTGHTEAIQITFDPAVFPYEKLVEVYWQQTDP 84          
BLAST of FC920782 vs. ExPASy Swiss-Prot
Match: MSRA_LISMH (Peptide methionine sulfoxide reductase msrA OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=msrA PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.572e-14
Identity = 30/76 (39.47%), Postives = 48/76 (63.16%), Query Frame = 1
Query:  454 AQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDP 681
            A F  GCFW +   F   PG+ K   GY+ G+  NP+Y++VCSGTT H E +++ +DP    ++ L++++W + DP
Sbjct:    9 ATFAGGCFWCMVKPFDTQPGIEKVVSGYTGGHTVNPTYKEVCSGTTGHTEAIQITFDPAVFPYEKLVEVYWQQTDP 84          
BLAST of FC920782 vs. ExPASy Swiss-Prot
Match: MSRA_LISIN (Peptide methionine sulfoxide reductase msrA OS=Listeria innocua GN=msrA PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.572e-14
Identity = 31/76 (40.79%), Postives = 47/76 (61.84%), Query Frame = 1
Query:  454 AQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDP 681
            A F  GCFW +   F   PG+ K   GY+ G+  NP+Y++VCSGTT H E V + +DP    ++ L++++W + DP
Sbjct:    9 ATFAGGCFWCMVKPFDTQPGIEKVVSGYTGGHTVNPTYKEVCSGTTGHTEAVEITFDPAVFPYEKLVEVYWQQTDP 84          
BLAST of FC920782 vs. ExPASy Swiss-Prot
Match: MSRA_BACA2 (Peptide methionine sulfoxide reductase msrA OS=Bacillus amyloliquefaciens (strain FZB42) GN=msrA PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.572e-14
Identity = 31/79 (39.24%), Postives = 48/79 (60.76%), Query Frame = 1
Query:  445 QQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDP 681
            ++ A F  GCFW +   F   PG+ K   GY+ G+  NP+YE+VCS TT H E V++ + P    ++ L+++FW + DP
Sbjct:    5 KEIATFAGGCFWCMVKPFDEQPGIEKVVSGYTGGHTENPTYEEVCSETTGHREAVQITFQPDIYPYEKLVELFWQQIDP 83          
BLAST of FC920782 vs. ExPASy Swiss-Prot
Match: MSRA_LISMF (Peptide methionine sulfoxide reductase msrA OS=Listeria monocytogenes serotype 4b (strain F2365) GN=msrA PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.665e-14
Identity = 30/76 (39.47%), Postives = 48/76 (63.16%), Query Frame = 1
Query:  454 AQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDP 681
            A F  GCFW +   F   PG+ K   GY+ G+  NP+Y++VCSGTT H E +++ +DP    ++ L++++W + DP
Sbjct:    9 ATFAGGCFWCMVKPFDTQPGIEKVISGYTGGHTVNPTYKEVCSGTTGHTEAIQITFDPAVFPYEKLVEVYWQQTDP 84          
BLAST of FC920782 vs. ExPASy Swiss-Prot
Match: MSRA_LISMC (Peptide methionine sulfoxide reductase msrA OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=msrA PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.665e-14
Identity = 30/76 (39.47%), Postives = 48/76 (63.16%), Query Frame = 1
Query:  454 AQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDP 681
            A F  GCFW +   F   PG+ K   GY+ G+  NP+Y++VCSGTT H E +++ +DP    ++ L++++W + DP
Sbjct:    9 ATFAGGCFWCMVKPFDTQPGIEKVISGYTGGHTVNPTYKEVCSGTTGHTEAIQITFDPAVFPYEKLVEVYWQQTDP 84          
The following BLAST results are available for this feature:
BLAST of FC920782 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 270
Match NameE-valueIdentityDescription
MSRA_MYCPN2.735e-1448.65Peptide methionine sulfoxide reductase msrA OS=Myc... [more]
MSRA_ARTCA2.735e-1447.37Peptide methionine sulfoxide reductase msrA OS=Art... [more]
MSRA_UREU13.572e-1448.65Peptide methionine sulfoxide reductase msrA OS=Ure... [more]
MSRA_STRP13.572e-1440.79Peptide methionine sulfoxide reductase msrA OS=Str... [more]
MSRA_LISMO3.572e-1439.47Peptide methionine sulfoxide reductase msrA OS=Lis... [more]
MSRA_LISMH3.572e-1439.47Peptide methionine sulfoxide reductase msrA OS=Lis... [more]
MSRA_LISIN3.572e-1440.79Peptide methionine sulfoxide reductase msrA OS=Lis... [more]
MSRA_BACA23.572e-1439.24Peptide methionine sulfoxide reductase msrA OS=Bac... [more]
MSRA_LISMF4.665e-1439.47Peptide methionine sulfoxide reductase msrA OS=Lis... [more]
MSRA_LISMC4.665e-1439.47Peptide methionine sulfoxide reductase msrA OS=Lis... [more]

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Properties
Property NameValue
Genbank descriptionC32013A03EF RVDevelop1 Citrus clementina cDNA clone C32013A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920782 ID=FC920782; Name=FC920782; organism=Citrus clementina; type=EST; length=691bp
TTGGAAAAATGGTCAGAGAATGAGGGAGTAATAATATTTTAATTTAAAGT
AGCTTGAAAAAAAATTCAATCTAACCTCGATTGAGCAAATCGACACGAGG
TAACTGAATTTTCTCAACACGTCTCCAAATCTTTAAAACCAGCAATGGTC
TTAAACAAGTGTCTTTCCATAACCACCACCACCACCACCGTCGCCGCTAC
CATCTCCAAATCGCCACTTCTTCTAATCTCCTCTTCTCTCTCTTCACCAA
AGAACCCTCTTTCTCTCTCTAAACCCAATTTTTCCCATTTCCCTATCACT
GCCCGACCCATTTCCACCCACTACAAGCCCCCCATGAACATCCTCAACAA
GCTCGGCTTCGGCTTCAGGCCCAGCCCCGACCCCGCGTCCACGGAGAACT
CCGCCATCGCTCAGGGCCCCGACGACGACGTTCCGGCCCCCGGTCAGCAG
TTTGCCCAGTTCGGCGCTGGCTGCTTTTGGGGCGTCGAATTGGCGTTCCA
GAGAGTGCCAGGTGTCACCAAGACCGAAGTTGGGTACAGCCAAGGCTACT
TGCATAACCCTAGCTACGAGGACGTGTGCAGTGGGACTACCAATCATAAT
GAAGTTGTTAGGGTTCAGTATGATCCTAAGGAGTGTAGTTTCGATACTTT
GCTTGATATGTTTTGGGCTCGCCATGATCCTCCCACGCTTA
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