FC920782

Overview
NameFC920782
Unique NameFC920782
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length691
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920782_ssr172 microsatellite FC920782_ssr172:172..189. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig12110 contig Ccv1_Contig12110:39..729. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920782 vs. ExPASy Swiss-Prot
Match: MSRA1_STAAR (Peptide methionine sulfoxide reductase msrA 1 OS=Staphylococcus aureus (strain MRSA252) GN=msrA1 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.728e-12
Identity = 32/76 (42.11%), Postives = 45/76 (59.21%), Query Frame = 1
Query:  454 AQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDP 681
            A F  GCFW +   F    G+ K   GY  G++ NP+YE V SGT+ H E V +QYD    S++ LL++F++  DP
Sbjct:    6 AYFAGGCFWCMTKPFDTFDGIEKVTSGYMGGHIENPTYEQVKSGTSGHLETVEIQYDVALFSYNKLLEIFFSVIDP 81          
BLAST of FC920782 vs. ExPASy Swiss-Prot
Match: MSRA1_STAAN (Peptide methionine sulfoxide reductase msrA 1 OS=Staphylococcus aureus (strain N315) GN=msrA1 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.728e-12
Identity = 32/76 (42.11%), Postives = 45/76 (59.21%), Query Frame = 1
Query:  454 AQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDP 681
            A F  GCFW +   F    G+ K   GY  G++ NP+YE V SGT+ H E V +QYD    S++ LL++F++  DP
Sbjct:    6 AYFAGGCFWCMTKPFDTFDGIEKVTSGYMGGHIENPTYEQVKSGTSGHLETVEIQYDVALFSYNKLLEIFFSVIDP 81          
BLAST of FC920782 vs. ExPASy Swiss-Prot
Match: MSRA1_STAAM (Peptide methionine sulfoxide reductase msrA 1 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=msrA1 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.728e-12
Identity = 32/76 (42.11%), Postives = 45/76 (59.21%), Query Frame = 1
Query:  454 AQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDP 681
            A F  GCFW +   F    G+ K   GY  G++ NP+YE V SGT+ H E V +QYD    S++ LL++F++  DP
Sbjct:    6 AYFAGGCFWCMTKPFDTFDGIEKVTSGYMGGHIENPTYEQVKSGTSGHLETVEIQYDVALFSYNKLLEIFFSVIDP 81          
BLAST of FC920782 vs. ExPASy Swiss-Prot
Match: MSRA1_STAA8 (Peptide methionine sulfoxide reductase msrA 1 OS=Staphylococcus aureus (strain NCTC 8325) GN=msrA1 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.728e-12
Identity = 32/76 (42.11%), Postives = 45/76 (59.21%), Query Frame = 1
Query:  454 AQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDP 681
            A F  GCFW +   F    G+ K   GY  G++ NP+YE V SGT+ H E V +QYD    S++ LL++F++  DP
Sbjct:    6 AYFAGGCFWCMTKPFDTFDGIEKVTSGYMGGHIENPTYEQVKSGTSGHLETVEIQYDVALFSYNKLLEIFFSVIDP 81          
BLAST of FC920782 vs. ExPASy Swiss-Prot
Match: MSRA_STRMU (Peptide methionine sulfoxide reductase msrA OS=Streptococcus mutans GN=msrA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.167e-11
Identity = 28/76 (36.84%), Postives = 44/76 (57.89%), Query Frame = 1
Query:  454 AQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDP 681
            A F  GCFW +   F+   G+     GY+ G++ NP+YE VCS  T H E V + +D  + S+  L++++W + DP
Sbjct:    4 AIFAGGCFWCMVQPFEEQDGILSVRSGYTGGHVVNPTYEQVCSKMTGHTEAVEIIFDESKISYADLVEIYWRQTDP 79          
BLAST of FC920782 vs. ExPASy Swiss-Prot
Match: MSRA_PSYA2 (Peptide methionine sulfoxide reductase msrA OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=msrA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.167e-11
Identity = 31/76 (40.79%), Postives = 43/76 (56.58%), Query Frame = 1
Query:  463 GAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPPTL 690
            G GCFW  E  F  V GV     GY  G   + +YE VC G T H EV++V+++      + +LD+F+A HDP T+
Sbjct:    7 GGGCFWCTESVFLSVKGVESVISGYMGGNAVSANYEAVCGGDTGHIEVIKVKFNESTVPLEVILDVFFATHDPTTM 82          
BLAST of FC920782 vs. ExPASy Swiss-Prot
Match: MSRA2_SYNY3 (Peptide methionine sulfoxide reductase msrA 2 OS=Synechocystis sp. (strain PCC 6803) GN=msrA2 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.167e-11
Identity = 34/83 (40.96%), Postives = 47/83 (56.63%), Query Frame = 1
Query:  436 APGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWA-RHDP 681
            A G + A F  GCFWG+E  F+ V GV   + GYS G     +Y  V  G T+H E + + YDP + S+  LL +F++  HDP
Sbjct:   33 ARGTEKAVFAGGCFWGLEAMFEEVRGVKDVQTGYSGGTEATANYARVSGGGTDHAESIEIVYDPAQVSYGELLKIFFSVGHDP 115          
BLAST of FC920782 vs. ExPASy Swiss-Prot
Match: MSRA_DROME (Peptide methionine sulfoxide reductase OS=Drosophila melanogaster GN=Eip71CD PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 3.697e-11
Identity = 32/75 (42.67%), Postives = 42/75 (56.00%), Query Frame = 1
Query:  454 AQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHD 678
            A FG GCFWG E  +    GV +T VGY+ G    P+Y  +     +H EV+ + YDP   SF  LLD+FW  H+
Sbjct:   42 ATFGMGCFWGAESLYGATRGVLRTTVGYAGGSSDLPTYRKM----GDHTEVLEIDYDPTVISFKELLDLFWNNHE 112          
BLAST of FC920782 vs. ExPASy Swiss-Prot
Match: MSRA_CLAMS (Peptide methionine sulfoxide reductase msrA OS=Clavibacter michiganensis subsp. sepedonicus (strain ATCC 33113 / JCM 9667) GN=msrA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.235e-11
Identity = 29/74 (39.19%), Postives = 44/74 (59.46%), Query Frame = 1
Query:  469 GCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPPTL 690
            GCFW ++  ++ + GV     GY  G+  +PSY+ VC+G T H E V+V +D +    D +LD+F+  HDP  L
Sbjct:    9 GCFWCLDAVYRTLDGVQDVISGYIGGHTAHPSYDAVCTGATGHAEAVKVVFDEEVIPADVILDVFFTLHDPRQL 82          
BLAST of FC920782 vs. ExPASy Swiss-Prot
Match: MSRA_CLAM3 (Peptide methionine sulfoxide reductase msrA OS=Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382) GN=msrA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.235e-11
Identity = 29/74 (39.19%), Postives = 44/74 (59.46%), Query Frame = 1
Query:  469 GCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPPTL 690
            GCFW ++  ++ + GV     GY  G+  +PSY+ VC+G T H E V+V +D +    D +LD+F+  HDP  L
Sbjct:    9 GCFWCLDAVYRTLDGVQDVISGYIGGHTAHPSYDAVCTGATGHAEAVKVVFDEEVIPADVILDVFFTLHDPRQL 82          
The following BLAST results are available for this feature:
BLAST of FC920782 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 270
Match NameE-valueIdentityDescription
MSRA1_STAAR9.728e-1242.11Peptide methionine sulfoxide reductase msrA 1 OS=S... [more]
MSRA1_STAAN9.728e-1242.11Peptide methionine sulfoxide reductase msrA 1 OS=S... [more]
MSRA1_STAAM9.728e-1242.11Peptide methionine sulfoxide reductase msrA 1 OS=S... [more]
MSRA1_STAA89.728e-1242.11Peptide methionine sulfoxide reductase msrA 1 OS=S... [more]
MSRA_STRMU2.167e-1136.84Peptide methionine sulfoxide reductase msrA OS=Str... [more]
MSRA_PSYA22.167e-1140.79Peptide methionine sulfoxide reductase msrA OS=Psy... [more]
MSRA2_SYNY32.167e-1140.96Peptide methionine sulfoxide reductase msrA 2 OS=S... [more]
MSRA_DROME3.697e-1142.67Peptide methionine sulfoxide reductase OS=Drosophi... [more]
MSRA_CLAMS8.235e-1139.19Peptide methionine sulfoxide reductase msrA OS=Cla... [more]
MSRA_CLAM38.235e-1139.19Peptide methionine sulfoxide reductase msrA OS=Cla... [more]

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Properties
Property NameValue
Genbank descriptionC32013A03EF RVDevelop1 Citrus clementina cDNA clone C32013A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920782 ID=FC920782; Name=FC920782; organism=Citrus clementina; type=EST; length=691bp
TTGGAAAAATGGTCAGAGAATGAGGGAGTAATAATATTTTAATTTAAAGT
AGCTTGAAAAAAAATTCAATCTAACCTCGATTGAGCAAATCGACACGAGG
TAACTGAATTTTCTCAACACGTCTCCAAATCTTTAAAACCAGCAATGGTC
TTAAACAAGTGTCTTTCCATAACCACCACCACCACCACCGTCGCCGCTAC
CATCTCCAAATCGCCACTTCTTCTAATCTCCTCTTCTCTCTCTTCACCAA
AGAACCCTCTTTCTCTCTCTAAACCCAATTTTTCCCATTTCCCTATCACT
GCCCGACCCATTTCCACCCACTACAAGCCCCCCATGAACATCCTCAACAA
GCTCGGCTTCGGCTTCAGGCCCAGCCCCGACCCCGCGTCCACGGAGAACT
CCGCCATCGCTCAGGGCCCCGACGACGACGTTCCGGCCCCCGGTCAGCAG
TTTGCCCAGTTCGGCGCTGGCTGCTTTTGGGGCGTCGAATTGGCGTTCCA
GAGAGTGCCAGGTGTCACCAAGACCGAAGTTGGGTACAGCCAAGGCTACT
TGCATAACCCTAGCTACGAGGACGTGTGCAGTGGGACTACCAATCATAAT
GAAGTTGTTAGGGTTCAGTATGATCCTAAGGAGTGTAGTTTCGATACTTT
GCTTGATATGTTTTGGGCTCGCCATGATCCTCCCACGCTTA
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