FC920782

Overview
NameFC920782
Unique NameFC920782
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length691
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920782 vs. ExPASy Swiss-Prot
Match: MSRA_GEOMG (Peptide methionine sulfoxide reductase msrA OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=msrA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.268e-19
Identity = 45/84 (53.57%), Postives = 53/84 (63.10%), Query Frame = 1
Query:  439 PGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPPTL 690
            P  + A FGAGCFW VE  F+RV GV  T  GY  G+  +P+YE+VCS  T H EVV V YDP   S+D LL +FW  HDP  L
Sbjct:    5 PELEKATFGAGCFWHVEAEFRRVSGVVATHAGYMGGWKDHPTYEEVCSKETGHAEVVEVVYDPARVSYDELLRIFWTIHDPTQL 88          
BLAST of FC920782 vs. ExPASy Swiss-Prot
Match: MSRA_MOUSE (Peptide methionine sulfoxide reductase OS=Mus musculus GN=Msra PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.656e-19
Identity = 46/105 (43.81%), Postives = 61/105 (58.10%), Query Frame = 1
Query:  367 RPSPDPASTENSAIAQGPDDDVPAPGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDP 681
            R  P P + ++        +  P  G Q A FG GCFWG E  F  + GV  T+VG++ G+  NP+Y++VCS  T H EVVRV Y P+  SF+ LL +FW  HDP
Sbjct:   38 RTEPIPVTAKHHVSGNRTVEPFPE-GTQMAVFGMGCFWGAERKFWVLKGVYSTQVGFAGGHTRNPTYKEVCSEKTGHAEVVRVVYRPEHISFEELLKVFWENHDP 141          
BLAST of FC920782 vs. ExPASy Swiss-Prot
Match: MSRA_GEOSL (Peptide methionine sulfoxide reductase msrA OS=Geobacter sulfurreducens GN=msrA PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.656e-19
Identity = 44/79 (55.70%), Postives = 53/79 (67.09%), Query Frame = 1
Query:  454 AQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPPTL 690
            A FGAGCFW VE  F+RVPGV  T  GY  G+  +P+YE+VCS TT H EVV V +DP   ++D LL +FW  HDP  L
Sbjct:   10 ATFGAGCFWHVEEEFRRVPGVVSTLAGYMGGWKEHPTYEEVCSKTTGHAEVVEVTFDPAAVTYDHLLRVFWDCHDPTQL 88          
BLAST of FC920782 vs. ExPASy Swiss-Prot
Match: MSRA_METMP (Peptide methionine sulfoxide reductase msrA OS=Methanococcus maripaludis GN=msrA PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.824e-19
Identity = 39/76 (51.32%), Postives = 52/76 (68.42%), Query Frame = 1
Query:  460 FGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPPT 687
            FG GCFWG E  F+++ GV  TEVG+  G + NP+Y  VC G + H EVV++ YDP+  S+D LLD+FW  H+P T
Sbjct:    9 FGMGCFWGAEEVFRKINGVVSTEVGFMGGTIKNPTYGQVCRGKSGHIEVVKIDYDPEIISYDELLDLFWNNHNPTT 84          
BLAST of FC920782 vs. ExPASy Swiss-Prot
Match: MSRA_STRGG (Peptide methionine sulfoxide reductase msrA OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) GN=msrA PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.688e-19
Identity = 45/105 (42.86%), Postives = 55/105 (52.38%), Query Frame = 1
Query:  367 RPSPDPASTENSAIAQGPDDDVPAPGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDP 681
            RP P+        +   P       G + A F  GCFWG E  F +  GV  T VGY  GY  NPSYE+ CSG T H E VRV +DP   S++ LL +FW  H+P
Sbjct:   20 RPVPEFTVPSRHTVLGNPLVGPYPDGLEVADFALGCFWGAERKFWQTEGVWTTLVGYQGGYTENPSYEEACSGLTGHTEAVRVVFDPAVVSYEELLKLFWESHNP 124          
BLAST of FC920782 vs. ExPASy Swiss-Prot
Match: MSRA_FRASN (Peptide methionine sulfoxide reductase msrA OS=Frankia sp. (strain EAN1pec) GN=msrA PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.688e-19
Identity = 43/80 (53.75%), Postives = 51/80 (63.75%), Query Frame = 1
Query:  442 GQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDP 681
            G + A FG GCFWG E  F +VPGV  T VGY+ G   NP+YE+ CSG T H E V V +DP + SF  LL +FW  HDP
Sbjct:   45 GLRTAVFGMGCFWGAERKFWQVPGVYSTAVGYAGGITPNPTYEEACSGLTGHTEAVLVVFDPAKVSFAELLRVFWEAHDP 124          
BLAST of FC920782 vs. ExPASy Swiss-Prot
Match: MSRA_YERPY (Peptide methionine sulfoxide reductase msrA OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=msrA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.817e-19
Identity = 42/80 (52.50%), Postives = 49/80 (61.25%), Query Frame = 1
Query:  442 GQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDP 681
            G   A F  GCFWG E  F + PGV  T  GYS G+  NP+Y +VCSG T H EVVRV +DP   S+  LL +FW  HDP
Sbjct:   42 GMDLAFFAMGCFWGAERLFWQQPGVYSTAAGYSGGHTPNPTYHEVCSGRTGHAEVVRVVFDPAVISYQQLLQIFWENHDP 121          
BLAST of FC920782 vs. ExPASy Swiss-Prot
Match: MSRA_YERPS (Peptide methionine sulfoxide reductase msrA OS=Yersinia pseudotuberculosis GN=msrA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.817e-19
Identity = 42/80 (52.50%), Postives = 49/80 (61.25%), Query Frame = 1
Query:  442 GQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDP 681
            G   A F  GCFWG E  F + PGV  T  GYS G+  NP+Y +VCSG T H EVVRV +DP   S+  LL +FW  HDP
Sbjct:   42 GMDLAFFAMGCFWGAERLFWQQPGVYSTAAGYSGGHTPNPTYHEVCSGRTGHAEVVRVVFDPAVISYQQLLQIFWENHDP 121          
BLAST of FC920782 vs. ExPASy Swiss-Prot
Match: MSRA_YERPP (Peptide methionine sulfoxide reductase msrA OS=Yersinia pestis (strain Pestoides F) GN=msrA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.817e-19
Identity = 42/80 (52.50%), Postives = 49/80 (61.25%), Query Frame = 1
Query:  442 GQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDP 681
            G   A F  GCFWG E  F + PGV  T  GYS G+  NP+Y +VCSG T H EVVRV +DP   S+  LL +FW  HDP
Sbjct:   42 GMDLAFFAMGCFWGAERLFWQQPGVYSTAAGYSGGHTPNPTYHEVCSGRTGHAEVVRVVFDPAVISYQQLLQIFWENHDP 121          
BLAST of FC920782 vs. ExPASy Swiss-Prot
Match: MSRA_YERPN (Peptide methionine sulfoxide reductase msrA OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=msrA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.817e-19
Identity = 42/80 (52.50%), Postives = 49/80 (61.25%), Query Frame = 1
Query:  442 GQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDP 681
            G   A F  GCFWG E  F + PGV  T  GYS G+  NP+Y +VCSG T H EVVRV +DP   S+  LL +FW  HDP
Sbjct:   42 GMDLAFFAMGCFWGAERLFWQQPGVYSTAAGYSGGHTPNPTYHEVCSGRTGHAEVVRVVFDPAVISYQQLLQIFWENHDP 121          
The following BLAST results are available for this feature:
BLAST of FC920782 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 270
Match NameE-valueIdentityDescription
MSRA_GEOMG1.268e-1953.57Peptide methionine sulfoxide reductase msrA OS=Geo... [more]
MSRA_MOUSE1.656e-1943.81Peptide methionine sulfoxide reductase OS=Mus musc... [more]
MSRA_GEOSL1.656e-1955.70Peptide methionine sulfoxide reductase msrA OS=Geo... [more]
MSRA_METMP2.824e-1951.32Peptide methionine sulfoxide reductase msrA OS=Met... [more]
MSRA_STRGG3.688e-1942.86Peptide methionine sulfoxide reductase msrA OS=Str... [more]
MSRA_FRASN3.688e-1953.75Peptide methionine sulfoxide reductase msrA OS=Fra... [more]
MSRA_YERPY4.817e-1952.50Peptide methionine sulfoxide reductase msrA OS=Yer... [more]
MSRA_YERPS4.817e-1952.50Peptide methionine sulfoxide reductase msrA OS=Yer... [more]
MSRA_YERPP4.817e-1952.50Peptide methionine sulfoxide reductase msrA OS=Yer... [more]
MSRA_YERPN4.817e-1952.50Peptide methionine sulfoxide reductase msrA OS=Yer... [more]

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Properties
Property NameValue
Genbank descriptionC32013A03EF RVDevelop1 Citrus clementina cDNA clone C32013A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920782 ID=FC920782; Name=FC920782; organism=Citrus clementina; type=EST; length=691bp
TTGGAAAAATGGTCAGAGAATGAGGGAGTAATAATATTTTAATTTAAAGT
AGCTTGAAAAAAAATTCAATCTAACCTCGATTGAGCAAATCGACACGAGG
TAACTGAATTTTCTCAACACGTCTCCAAATCTTTAAAACCAGCAATGGTC
TTAAACAAGTGTCTTTCCATAACCACCACCACCACCACCGTCGCCGCTAC
CATCTCCAAATCGCCACTTCTTCTAATCTCCTCTTCTCTCTCTTCACCAA
AGAACCCTCTTTCTCTCTCTAAACCCAATTTTTCCCATTTCCCTATCACT
GCCCGACCCATTTCCACCCACTACAAGCCCCCCATGAACATCCTCAACAA
GCTCGGCTTCGGCTTCAGGCCCAGCCCCGACCCCGCGTCCACGGAGAACT
CCGCCATCGCTCAGGGCCCCGACGACGACGTTCCGGCCCCCGGTCAGCAG
TTTGCCCAGTTCGGCGCTGGCTGCTTTTGGGGCGTCGAATTGGCGTTCCA
GAGAGTGCCAGGTGTCACCAAGACCGAAGTTGGGTACAGCCAAGGCTACT
TGCATAACCCTAGCTACGAGGACGTGTGCAGTGGGACTACCAATCATAAT
GAAGTTGTTAGGGTTCAGTATGATCCTAAGGAGTGTAGTTTCGATACTTT
GCTTGATATGTTTTGGGCTCGCCATGATCCTCCCACGCTTA
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