FC920783

Overview
NameFC920783
Unique NameFC920783
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length640
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920783 vs. ExPASy Swiss-Prot
Match: OMT1_CHRAE (Quercetin 3-O-methyltransferase 1 OS=Chrysosplenium americanum GN=OMT1 PE=1 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 5.704e-34
Identity = 76/172 (44.19%), Postives = 110/172 (63.95%), Query Frame = 2
Query:  125 PWPCKQ*LELGVFEIIAKAGPGAKLSTSEIAAQLPATKNKDAPMMLDRMLRLLASHSDVECSIDDADDSQRLYGLNDVSNYFVPNKDGVSLGPMLALIQDKVFMDSWSQLKEAITERGVPFDRVHGTHAF*YLGLDPRFIEVFNISMYNYTTLVIQKILEEY*GLQHMELLV 640
            P   K  +EL + EII   G    +S +EIA+ LP T N DAP M+DR+LRLL+ +S V CS+   DD QR+YGL  V  Y   N+DGVS+  +  + QDKV M+SW  LK+A+ + G+PF++ +G  +F Y G DPRF +VFN  M +++T+ ++K+ + Y G Q +  LV
Sbjct:   14 PMVLKSAIELDLLEIIR--GQDTCMSPTEIASHLPTT-NPDAPAMVDRILRLLSCYSVVTCSVRSVDD-QRVYGLAPVCKYLTKNQDGVSIAALCLMNQDKVLMESWYHLKDAVLDGGIPFNKAYGMSSFEYHGTDPRFNKVFNRGMSDHSTITMKKVFQAYQGFQGLTSLV 181          

HSP 2 Score: 24.2534 bits (51), Expect = 5.704e-34
Identity = 10/19 (52.63%), Postives = 15/19 (78.95%), Query Frame = 1
Query:   91 YANQLVTASVLPMAMQAVI 147
            +A QL +ASVLPM +++ I
Sbjct:    3 FAMQLASASVLPMVLKSAI 21          
BLAST of FC920783 vs. ExPASy Swiss-Prot
Match: OMT2_CHRAE (Quercetin 3-O-methyltransferase 2 OS=Chrysosplenium americanum GN=OMT2 PE=1 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 9.676e-34
Identity = 76/172 (44.19%), Postives = 110/172 (63.95%), Query Frame = 2
Query:  125 PWPCKQ*LELGVFEIIAKAGPGAKLSTSEIAAQLPATKNKDAPMMLDRMLRLLASHSDVECSIDDADDSQRLYGLNDVSNYFVPNKDGVSLGPMLALIQDKVFMDSWSQLKEAITERGVPFDRVHGTHAF*YLGLDPRFIEVFNISMYNYTTLVIQKILEEY*GLQHMELLV 640
            P   K  +EL + EII   G    +S +EIA+ LP T N DAP M+DR+LRLL+ +S V CS+   DD QR+YGL  V  Y   N+DGVS+  +  + QDKV M+SW  LK+A+ + G+PF++ +G  +F Y G DPRF +VFN  M +++T+ ++K+ + Y G Q +  LV
Sbjct:   14 PMVLKSAIELDLLEIIR--GQDTCMSPTEIASHLPTT-NPDAPAMVDRILRLLSCYSVVTCSVRSVDD-QRVYGLAPVCKYLTKNQDGVSIAALCLMNQDKVLMESWYHLKDAVLDGGIPFNKAYGMSSFEYHGTDPRFNKVFNRGMSDHSTITMKKVFQTYQGFQGLTSLV 181          

HSP 2 Score: 23.483 bits (49), Expect = 9.676e-34
Identity = 10/19 (52.63%), Postives = 14/19 (73.68%), Query Frame = 1
Query:   91 YANQLVTASVLPMAMQAVI 147
            +A QL  ASVLPM +++ I
Sbjct:    3 FAMQLACASVLPMVLKSAI 21          
BLAST of FC920783 vs. ExPASy Swiss-Prot
Match: COMT1_SACOF (Caffeic acid 3-O-methyltransferase OS=Saccharum officinarum GN=COMT PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 6.635e-33
Identity = 76/175 (43.43%), Postives = 110/175 (62.86%), Query Frame = 2
Query:  125 PWPCKQ*LELGVFEII-AKAGPGAKLSTSEIAAQLP-ATKNKDAPMMLDRMLRLLASHSDVECSIDDADDS-QRLYGLNDVSNYFVPNKDGVSLGPMLALIQDKVFMDSWSQLKEAITERGVPFDRVHGTHAF*YLGLDPRFIEVFNISMYNYTTLVIQKILEEY*GLQHMELLV 640
            P   K  LELG+ E++ A+A  G  L+  E+ A+LP A  N DA  M+DRMLRLLAS+  V+C ++D D   +R Y    V  +  PN+DGVS+  +  + QDKV M+SW  LK+A+ + G+PF++ +G  AF Y G DPRF  VFN  M N++ ++ +K+LE Y G + +  LV
Sbjct:   30 PMTLKNALELGLLEVLQAEAPAGKALAPEEVVARLPVAPTNPDAADMVDRMLRLLASYDVVKCQMEDKDGKYERRYSAAPVGKWLTPNEDGVSMAALTLMNQDKVLMESWYYLKDAVLDGGIPFNKAYGMTAFEYHGTDPRFNRVFNEGMKNHSVIITKKLLEFYTGFEGVSTLV 204          
BLAST of FC920783 vs. ExPASy Swiss-Prot
Match: COMT1_MAIZE (Caffeic acid 3-O-methyltransferase OS=Zea mays PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 8.968e-30
Identity = 70/177 (39.55%), Postives = 106/177 (59.89%), Query Frame = 2
Query:  125 PWPCKQ*LELGVFEIIAKAGPGAK--LSTSEIAAQLPATKNKDAPM--MLDRMLRLLASHSDVECSIDDADDS-QRLYGLNDVSNYFVPNKDGVSLGPMLALIQDKVFMDSWSQLKEAITERGVPFDRVHGTHAF*YLGLDPRFIEVFNISMYNYTTLVIQKILEEY*GLQHMELLV 640
            P   K  +ELG+ E++ K   G K  L+  E+ A++PA  +  A    M+DRMLRLLAS+  V C ++D D   +R Y    V  +  PN+DGVS+  +  + QDKV M+SW  LK+A+ + G+PF++ +G  AF Y G D RF  VFN  M N++ ++ +K+L+ Y G + +  LV
Sbjct:   30 PMTLKNAIELGLLEVLQKEAGGGKAALAPEEVVARMPAAPSDPAAAAAMVDRMLRLLASYDVVRCQMEDRDGRYERRYSAAPVCKWLTPNEDGVSMAALALMNQDKVLMESWYYLKDAVLDGGIPFNKAYGMTAFEYHGTDARFNRVFNEGMKNHSVIITKKLLDFYTGFEGVSTLV 206          
BLAST of FC920783 vs. ExPASy Swiss-Prot
Match: OMT1_ORYSJ (Quercetin 3-O-methyltransferase 1 OS=Oryza sativa subsp. japonica GN=ROMT-9 PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 9.915e-29
Identity = 69/180 (38.33%), Postives = 105/180 (58.33%), Query Frame = 2
Query:  125 PWPCKQ*LELGVFEIIAKA------GPGAKLSTSEIAAQLPATKNKDAPMMLDRMLRLLASHSDVECSIDDADDSQ--RLYGLNDVSNYFVPNKDGVSLGPMLALIQDKVFMDSWSQLKEAITERGVPFDRVHGTHAF*YLGLDPRFIEVFNISMYNYTTLVIQKILEEY*GLQHMELLV 640
            P   K  +ELG+ E +  A      G  A L+ +E+A +LP+  N  A  M+DRMLRLLAS++ V C +++  D +  R Y    V  +  PN+DGVS+  +  + QDKV M+SW  LK+A+ + G+PF++ +G  AF Y G D RF  VFN  M N++ ++ +K+L+ Y G      +V
Sbjct:   30 PMTLKNAIELGLLETLQSAAVAGGGGKAALLTPAEVADKLPSKANPAAADMVDRMLRLLASYNVVRCEMEEGADGKLSRRYAAAPVCKWLTPNEDGVSMAALALMNQDKVLMESWYYLKDAVLDGGIPFNKAYGMTAFEYHGTDARFNRVFNEGMKNHSVIITKKLLDLYTGFDAASTVV 209          
BLAST of FC920783 vs. ExPASy Swiss-Prot
Match: SMT_COPJA ((S)-scoulerine 9-O-methyltransferase OS=Coptis japonica GN=SMT PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.166e-27
Identity = 72/178 (40.45%), Postives = 107/178 (60.11%), Query Frame = 2
Query:  110 RLQCSPWPCKQ*LELGVFEIIAKAGPGAKLSTSEIAAQLPATKNKDAPMMLDRMLRLLASHSDVECSIDDADDSQRLYGLNDVSNYFVPNKDGVSLGPMLALIQDKVFMDSWSQLKEAITERGV-PFDRVHGTHAF*YLGLDPRFIEVFNISMYNYTTLVIQKILEEY*GLQHMELLV 640
            RL C P   +  +EL VFEII++AGP A+LS S+I A++P TKN  A + LDR+LR+L + S +  S      S R+YGLN+ S   V ++D VS+ PML    DK  ++S+  +K+ + E GV PFDR HG   F Y G + R  + FN +M   +T+   ++ + Y G  +++ LV
Sbjct:   47 RLICLPMALRAAIELNVFEIISQAGPDAQLSPSDIVAKIP-TKNPSAAISLDRILRMLGASSILSVS---TTKSGRVYGLNEESRCLVASEDKVSVVPMLLFTSDKAVVESFYNIKDVVLEEGVIPFDRTHGMDFFQYAGKEERVNKSFNQAMGAGSTIAFDEVFKVYKGFDNLKELV 220          
BLAST of FC920783 vs. ExPASy Swiss-Prot
Match: CHOMT_MEDSA (Isoliquiritigenin 2'-O-methyltransferase OS=Medicago sativa PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.174e-21
Identity = 63/170 (37.06%), Postives = 99/170 (58.24%), Query Frame = 2
Query:  146 LELGVFEIIAKAGP-GAKLSTSEIAAQLPA-TKNKDAPMMLDRMLRLLASHSDVECSIDDADD--SQRLYGLNDVSNYFVPNKDGVSLGPMLALIQDKVFMDSWSQLKEAITERGVP-FDRVHGTHAF*YLGLDPRFIEVFNISMYNYTTLVIQKILEEY*GLQHMELLV 640
            ++L +FEIIAKA P GA +S SEIA++LPA T++ D P  LDRMLRLLAS+S +  +    +D  ++R+YGL+ V  Y VP++    L      +     +  W   KEA+ +  +  F  VHG   + ++G D +  ++FN SM +     ++++LE Y G + +  LV
Sbjct:   45 IDLNLFEIIAKATPPGAFMSPSEIASKLPASTQHSDLPNRLDRMLRLLASYSVLTSTTRTIEDGGAERVYGLSMVGKYLVPDESRGYLASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNVHGVTKYEFMGKDKKMNQIFNKSMVDVCATEMKRMLEIYTGFEGISTLV 214          
The following BLAST results are available for this feature:
BLAST of FC920783 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
OMT1_CHRAE5.704e-3444.19Quercetin 3-O-methyltransferase 1 OS=Chrysospleniu... [more]
OMT2_CHRAE9.676e-3444.19Quercetin 3-O-methyltransferase 2 OS=Chrysospleniu... [more]
COMT1_SACOF6.635e-3343.43Caffeic acid 3-O-methyltransferase OS=Saccharum of... [more]
COMT1_MAIZE8.968e-3039.55Caffeic acid 3-O-methyltransferase OS=Zea mays PE=... [more]
OMT1_ORYSJ9.915e-2938.33Quercetin 3-O-methyltransferase 1 OS=Oryza sativa ... [more]
SMT_COPJA4.166e-2740.45(S)-scoulerine 9-O-methyltransferase OS=Coptis jap... [more]
CHOMT_MEDSA1.174e-2137.06Isoliquiritigenin 2'-O-methyltransferase OS=Medica... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32013A04EF RVDevelop1 Citrus clementina cDNA clone C32013A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920783 ID=FC920783; Name=FC920783; organism=Citrus clementina; type=EST; length=640bp
GACAGATCTATAATTGCATTCTTCTCTCAGCAAAACGGTAAGGAAATTCA
AGAGAATATGGCTAATGAAGGGAGAGACGAAAGCTTTGCATATGCCAATC
AATTGGTGACGGCTTCAGTGCTCCCCATGGCCATGCAAGCAGTAATTGGA
GCTGGGAGTTTTTGAGATCATAGCCAAAGCTGGTCCTGGAGCAAAGCTCT
CAACTTCAGAGATTGCCGCTCAGTTGCCCGCGACCAAGAATAAAGACGCA
CCTATGATGCTGGATCGAATGCTCAGGCTTCTGGCTAGCCATAGTGATGT
TGAATGCTCAATTGATGATGCTGATGATTCTCAGAGACTATACGGCTTGA
ATGATGTTTCCAACTACTTTGTGCCTAATAAAGATGGTGTCTCATTAGGC
CCTATGTTGGCCTTAATTCAGGACAAGGTCTTTATGGACAGCTGGTCCCA
ATTGAAAGAAGCTATTACTGAACGAGGAGTTCCATTTGATCGAGTACATG
GAACACACGCTTTCTAGTATCTGGGATTGGACCCCAGGTTCATTGAAGTT
TTCAACATATCGATGTACAACTATACCACTTTGGTCATTCAGAAAATCCT
TGAGGAGTACTAAGGTCTCCAGCACATGGAGCTACTGGTT
back to top