FC920786

Overview
NameFC920786
Unique NameFC920786
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length446
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13179 contig Ccv1_Contig13179:268..714. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920786 vs. ExPASy Swiss-Prot
Match: PIP15_MAIZE (Aquaporin PIP1-5 OS=Zea mays GN=PIP1-5 PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.301e-41
Identity = 68/97 (70.10%), Postives = 76/97 (78.35%), Query Frame = 3
Query:   87 NTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLILALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYTR 377
            ++ +C  VGI GIAW+FGGMIF LVYCTAGISGGHINPAVTFGLFL RK+SL  AL YMV QCLGAICG G VK FQ+  Y   GGGAN +  GYT+
Sbjct:   80 SSSKCATVGIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFQEGLYMGAGGGANAVNPGYTK 176          

HSP 2 Score: 47.7506 bits (112), Expect = 1.301e-41
Identity = 22/24 (91.67%), Postives = 23/24 (95.83%), Query Frame = 2
Query:  374 KGTGLGAEIIGTFVLVYTVFSATD 445
            KG GLGAEI+GTFVLVYTVFSATD
Sbjct:  176 KGDGLGAEIVGTFVLVYTVFSATD 199          
BLAST of FC920786 vs. ExPASy Swiss-Prot
Match: PIP11_ORYSJ (Aquaporin PIP1-1 OS=Oryza sativa subsp. japonica GN=PIP1-1 PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.695e-41
Identity = 67/97 (69.07%), Postives = 77/97 (79.38%), Query Frame = 3
Query:   87 NTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLILALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYTR 377
            ++ +C  VGI GIAW+FGGMIF LVYCTAGISGGHINPAVTFGLFL RK+SL  A+ Y+V QCLGAICG G VK FQ+  Y   GGGAN +A GYT+
Sbjct:   81 SSSKCATVGIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAIFYIVMQCLGAICGAGVVKGFQQGLYMGNGGGANVVASGYTK 177          

HSP 2 Score: 47.3654 bits (111), Expect = 1.695e-41
Identity = 21/24 (87.50%), Postives = 23/24 (95.83%), Query Frame = 2
Query:  374 KGTGLGAEIIGTFVLVYTVFSATD 445
            KG GLGAEI+GTF+LVYTVFSATD
Sbjct:  177 KGDGLGAEIVGTFILVYTVFSATD 200          
BLAST of FC920786 vs. ExPASy Swiss-Prot
Match: PIP1_SOLLC (Probable aquaporin PIP-type pTOM75 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.209e-41
Identity = 67/93 (72.04%), Postives = 72/93 (77.42%), Query Frame = 3
Query:   99 CGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLILALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYTR 377
            C  VGI G+AWAFGGMIF LVYCTAGISGGHINPAVTFGLFL RK+SL  A+ YMV QCLGAICG G VK F    Y R GGGAN +  GYT+
Sbjct:   83 CSSVGIQGVAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMVMQCLGAICGAGVVKGFMVGPYQRLGGGANVVNPGYTK 175          

HSP 2 Score: 48.1358 bits (113), Expect = 2.209e-41
Identity = 23/24 (95.83%), Postives = 23/24 (95.83%), Query Frame = 2
Query:  374 KGTGLGAEIIGTFVLVYTVFSATD 445
            KG GLGAEIIGTFVLVYTVFSATD
Sbjct:  175 KGDGLGAEIIGTFVLVYTVFSATD 198          
BLAST of FC920786 vs. ExPASy Swiss-Prot
Match: PIP13_ORYSJ (Aquaporin PIP 1-3 OS=Oryza sativa subsp. japonica GN=PIP1-3 PE=2 SV=2)

HSP 1 Score: 142.124 bits (357), Expect = 2.878e-41
Identity = 67/99 (67.68%), Postives = 75/99 (75.76%), Query Frame = 3
Query:   81 NLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLILALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYTR 377
            N +  +C  VGI GIAW+FGGMIF LVYCTAGISGGHINPAVTFGLFL RK+SL  A+ YM  QCLGAICG G VK FQ+  Y   GGGAN +  GYT+
Sbjct:   78 NKSASKCATVGIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMAMQCLGAICGAGVVKGFQRGLYMGSGGGANAVNPGYTK 176          

HSP 2 Score: 47.7506 bits (112), Expect = 2.878e-41
Identity = 22/24 (91.67%), Postives = 23/24 (95.83%), Query Frame = 2
Query:  374 KGTGLGAEIIGTFVLVYTVFSATD 445
            KG GLGAEI+GTFVLVYTVFSATD
Sbjct:  176 KGDGLGAEIVGTFVLVYTVFSATD 199          
BLAST of FC920786 vs. ExPASy Swiss-Prot
Match: PIP16_MAIZE (Aquaporin PIP1-6 OS=Zea mays GN=PIP1-6 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 8.292e-41
Identity = 65/94 (69.15%), Postives = 75/94 (79.79%), Query Frame = 3
Query:   96 QCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLILALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYTR 377
            +CG VGI GIAWAFGGMIF LVYCTAG+SGGHINPAVTFGL L RK+SL  A+ Y+V QCLGA+CG G VKAF  + Y   GGGAN ++ GYT+
Sbjct:   89 KCGTVGIQGIAWAFGGMIFALVYCTAGVSGGHINPAVTFGLLLARKLSLTRAVYYVVMQCLGAVCGAGVVKAFGSALYESAGGGANAVSPGYTK 182          

HSP 2 Score: 47.3654 bits (111), Expect = 8.292e-41
Identity = 21/24 (87.50%), Postives = 23/24 (95.83%), Query Frame = 2
Query:  374 KGTGLGAEIIGTFVLVYTVFSATD 445
            KG GLGAE++GTFVLVYTVFSATD
Sbjct:  182 KGDGLGAEVVGTFVLVYTVFSATD 205          
BLAST of FC920786 vs. ExPASy Swiss-Prot
Match: PIP27_ORYSJ (Probable aquaporin PIP2-7 OS=Oryza sativa subsp. japonica GN=PIP2-7 PE=2 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 1.408e-40
Identity = 71/126 (56.35%), Postives = 85/126 (67.46%), Query Frame = 3
Query:    3 AEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLILALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYTRA 380
            AEF+A            IGYK+Q       D C GVG LG+AW+FG  IF+LVYCT G+SGGHINPAVT GLF GRK+SL+  +LY+VAQCLGAI G G VK   K  Y+  GGGAN ++DGY+ A
Sbjct:   48 AEFMATLIFLYVSIATVIGYKNQ---RATVDACTGVGYLGVAWSFGATIFVLVYCTGGVSGGHINPAVTLGLFFGRKLSLVRTVLYVVAQCLGAIAGAGIVKGIMKRPYDALGGGANTVSDGYSAA 170          

HSP 2 Score: 41.2022 bits (95), Expect = 1.408e-40
Identity = 18/20 (90.00%), Postives = 20/20 (100.00%), Query Frame = 2
Query:  386 LGAEIIGTFVLVYTVFSATD 445
            LGAEI+GTF+LVYTVFSATD
Sbjct:  173 LGAEIVGTFILVYTVFSATD 192          
BLAST of FC920786 vs. ExPASy Swiss-Prot
Match: PIP2_PEA (Probable aquaporin PIP-type 7a OS=Pisum sativum GN=TRG-31 PE=2 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 2.147e-38
Identity = 66/97 (68.04%), Postives = 74/97 (76.29%), Query Frame = 3
Query:   90 TDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLILALLYMVAQCLGAICGCGFVKAFQ-KSYYNRYGGGANELADGYTR 377
            + +C  VGI GIAWAFGGMIF LVYCTAGISGGHINPAVTFGLFL RK+SL  A+ YMV Q LGAICG G VK F+ K  +    GGAN +A GYT+
Sbjct:   82 SSKCKTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAIFYMVMQVLGAICGAGVVKGFEGKQRFGDLNGGANFVAPGYTK 178          

HSP 2 Score: 47.3654 bits (111), Expect = 2.147e-38
Identity = 21/24 (87.50%), Postives = 23/24 (95.83%), Query Frame = 2
Query:  374 KGTGLGAEIIGTFVLVYTVFSATD 445
            KG GLGAEI+GTF+LVYTVFSATD
Sbjct:  178 KGDGLGAEIVGTFILVYTVFSATD 201          
BLAST of FC920786 vs. ExPASy Swiss-Prot
Match: PIP11_MAIZE (Aquaporin PIP1-1 OS=Zea mays GN=PIP1-1 PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 5.132e-37
Identity = 63/97 (64.95%), Postives = 73/97 (75.26%), Query Frame = 3
Query:   87 NTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLILALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYTR 377
            +T +C  VGI GIAW+FGGMI  LVYCTAGISG HINPAVTFGLFL RK+SL  A+ Y++ QCLGAICG G VK FQ+  Y   GG  N +A GYT+
Sbjct:   80 STSKCATVGIQGIAWSFGGMILALVYCTAGISG-HINPAVTFGLFLARKLSLTRAVFYIIMQCLGAICGRGVVKGFQQGLYMGNGGRRNVVAPGYTK 175          

HSP 2 Score: 47.3654 bits (111), Expect = 5.132e-37
Identity = 21/24 (87.50%), Postives = 23/24 (95.83%), Query Frame = 2
Query:  374 KGTGLGAEIIGTFVLVYTVFSATD 445
            KG GLGAEI+GTF+LVYTVFSATD
Sbjct:  175 KGDGLGAEIVGTFILVYTVFSATD 198          
BLAST of FC920786 vs. ExPASy Swiss-Prot
Match: PIP28_ORYSJ (Probable aquaporin PIP2-8 OS=Oryza sativa subsp. japonica GN=PIP2-8 PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.509e-36
Identity = 69/125 (55.20%), Postives = 82/125 (65.60%), Query Frame = 3
Query:    3 AEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLILALLYMVAQCLGAICGCGFVKAFQ-KSYYNRYGGGANELADGYT 374
            AEF A            IG K Q+         GG G+LGIAWAFGG+IF+LVYCTAGISGGH+NPAVTF + L R+VSL  A LY +AQC+GA+CG G  +A      Y R+GGGANELA GY+
Sbjct:   39 AEFTATLLLVCISVSTVIGEKRQSGE-------GGAGVLGIAWAFGGLIFVLVYCTAGISGGHMNPAVTFAMVLARRVSLPRAALYTMAQCVGAVCGAGLARAMHGGGQYARHGGGANELAAGYS 156          

HSP 2 Score: 40.4318 bits (93), Expect = 2.509e-36
Identity = 18/23 (78.26%), Postives = 21/23 (91.30%), Query Frame = 2
Query:  377 GTGLGAEIIGTFVLVYTVFSATD 445
            G G+ AE++GTFVLVYTVFSATD
Sbjct:  158 GAGVVAEMVGTFVLVYTVFSATD 180          
BLAST of FC920786 vs. ExPASy Swiss-Prot
Match: PIP12_ORYSJ (Probable aquaporin PIP1-2 OS=Oryza sativa subsp. japonica GN=PIP1-2 PE=2 SV=3)

HSP 1 Score: 150.599 bits (379), Expect = 2.733e-36
Identity = 72/99 (72.73%), Postives = 78/99 (78.79%), Query Frame = 3
Query:   81 NLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLILALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYTR 377
            N +T +C  VGI GIAW+FGGMIF LVYCTAGISGGHINPAVTFGLFL RK+SL  AL YMV QCLGAICG G VK FQK  Y   GGGAN +A GYT+
Sbjct:   78 NNSTSKCATVGIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFQKGLYETTGGGANVVAPGYTK 176          
The following BLAST results are available for this feature:
BLAST of FC920786 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
PIP15_MAIZE1.301e-4170.10Aquaporin PIP1-5 OS=Zea mays GN=PIP1-5 PE=2 SV=1[more]
PIP11_ORYSJ1.695e-4169.07Aquaporin PIP1-1 OS=Oryza sativa subsp. japonica G... [more]
PIP1_SOLLC2.209e-4172.04Probable aquaporin PIP-type pTOM75 OS=Solanum lyco... [more]
PIP13_ORYSJ2.878e-4167.68Aquaporin PIP 1-3 OS=Oryza sativa subsp. japonica ... [more]
PIP16_MAIZE8.292e-4169.15Aquaporin PIP1-6 OS=Zea mays GN=PIP1-6 PE=2 SV=1[more]
PIP27_ORYSJ1.408e-4056.35Probable aquaporin PIP2-7 OS=Oryza sativa subsp. j... [more]
PIP2_PEA2.147e-3868.04Probable aquaporin PIP-type 7a OS=Pisum sativum GN... [more]
PIP11_MAIZE5.132e-3764.95Aquaporin PIP1-1 OS=Zea mays GN=PIP1-1 PE=1 SV=1[more]
PIP28_ORYSJ2.509e-3655.20Probable aquaporin PIP2-8 OS=Oryza sativa subsp. j... [more]
PIP12_ORYSJ2.733e-3672.73Probable aquaporin PIP1-2 OS=Oryza sativa subsp. j... [more]

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Properties
Property NameValue
Genbank descriptionC32013A07EF RVDevelop1 Citrus clementina cDNA clone C32013A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920786 ID=FC920786; Name=FC920786; organism=Citrus clementina; type=EST; length=446bp
TTGCTGAGTTCATCGCTACGCTTTTGTTTCTTTATGTTACCGTCTTGACT
GTGATTGGATACAAGAGCCAGACTGATCCCAACTTGAATACCGATCAGTG
TGGTGGCGTTGGCATTCTTGGCATCGCTTGGGCCTTTGGTGGCATGATCT
TCATTCTCGTTTACTGCACAGCCGGTATTTCTGGTGGACATATCAACCCG
GCTGTGACATTCGGACTGTTCTTGGGGCGCAAGGTGTCGCTCATCCTAGC
TCTTTTGTACATGGTAGCACAGTGCTTGGGTGCAATCTGTGGTTGTGGGT
TTGTGAAGGCTTTCCAAAAATCATACTACAACAGGTATGGAGGTGGGGCC
AATGAGCTAGCTGATGGATACACAAGGGCACCGGACTGGGTGCTGAGATC
ATCGGTACTTTCGTTCTTGTCTACACTGTTTTCTCTGCCACTGATC
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