FC920786

Overview
NameFC920786
Unique NameFC920786
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length446
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920786 vs. ExPASy Swiss-Prot
Match: TIP11_ARATH (Aquaporin TIP1-1 OS=Arabidopsis thaliana GN=TIP1-1 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.079e-11
Identity = 37/102 (36.27%), Postives = 55/102 (53.92%), Query Frame = 3
Query:    3 AEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLILALLYMVAQCLGAICGCGFVK 308
            AEFI+            + +   T+    T    G+    +A AFG  +F+ V   A ISGGH+NPAVTFG F+G  ++L+  +LY +AQ LG++  C  +K
Sbjct:   25 AEFISTLIFVVAGSGSGMAFNKLTENGATTPS--GLVAAAVAHAFG--LFVAVSVGANISGGHVNPAVTFGAFIGGNITLLRGILYWIAQLLGSVVACLILK 122          

HSP 2 Score: 21.9422 bits (45), Expect = 2.079e-11
Identity = 9/14 (64.29%), Postives = 12/14 (85.71%), Query Frame = 2
Query:  395 EIIGTFVLVYTVFS 436
            EI+ TF LVYTV++
Sbjct:  148 EIVMTFGLVYTVYA 161          
BLAST of FC920786 vs. ExPASy Swiss-Prot
Match: AQP1_PIG (Aquaporin-1 OS=Sus scrofa GN=AQP1 PE=2 SV=3)

HSP 1 Score: 58.9214 bits (141), Expect = 2.692e-11
Identity = 32/82 (39.02%), Postives = 45/82 (54.88%), Query Frame = 3
Query:  123 IAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLILALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADG 368
            ++ AFG  I  L      ISG H+NPAVT GL L  ++S++ A++Y++AQC+GAI     +     S       G N LA G
Sbjct:   54 VSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISVLRAVMYIIAQCVGAIVATAILSGITSSLPGN-SLGLNSLAPG 134          

HSP 2 Score: 30.0314 bits (66), Expect = 2.692e-11
Identity = 14/26 (53.85%), Postives = 16/26 (61.54%), Query Frame = 2
Query:  368 IHKGTGLGAEIIGTFVLVYTVFSATD 445
            +  G GLG EIIGT  LV  V + TD
Sbjct:  135 VDSGQGLGIEIIGTLQLVLCVLATTD 160          
BLAST of FC920786 vs. ExPASy Swiss-Prot
Match: TIP12_ORYSJ (Probable aquaporin TIP1-2 OS=Oryza sativa subsp. japonica GN=TIP1-2 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 2.699e-11
Identity = 37/102 (36.27%), Postives = 54/102 (52.94%), Query Frame = 3
Query:    3 AEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLILALLYMVAQCLGAICGCGFVK 308
            AEFI+            + +   TD    T      G++  + A    +F+ V   A ISGGH+NPAVTFG F+G  +SL+ A++Y VAQ LG++  C  +K
Sbjct:   25 AEFISMLIFVFAGSGSGMAFSKLTDGGGTTPS----GLIAASLAHALALFVAVAVGANISGGHVNPAVTFGAFVGGNISLVKAVVYWVAQLLGSVVACLLLK 122          

HSP 2 Score: 21.9422 bits (45), Expect = 2.699e-11
Identity = 9/14 (64.29%), Postives = 12/14 (85.71%), Query Frame = 2
Query:  395 EIIGTFVLVYTVFS 436
            EI+ TF LVYTV++
Sbjct:  148 EIVMTFGLVYTVYA 161          
BLAST of FC920786 vs. ExPASy Swiss-Prot
Match: TIP23_ARATH (Aquaporin TIP2-3 OS=Arabidopsis thaliana GN=TIP2-3 PE=1 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 2.701e-11
Identity = 30/62 (48.39%), Postives = 40/62 (64.52%), Query Frame = 3
Query:  111 GILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLILALLYMVAQCLGAICGC 296
            G++ IA A    +F+ V   A ISGGH+NPAVT GL +G  ++LI    Y +AQCLG+I  C
Sbjct:   55 GLVAIAIAHAFALFVGVSIAANISGGHLNPAVTLGLAIGGNITLITGFFYWIAQCLGSIVAC 116          

HSP 2 Score: 24.2534 bits (51), Expect = 2.701e-11
Identity = 10/18 (55.56%), Postives = 14/18 (77.78%), Query Frame = 2
Query:  383 GLGAEIIGTFVLVYTVFS 436
            G+  EI+ TF LVYTV++
Sbjct:  142 GVVMEIVVTFALVYTVYA 159          
BLAST of FC920786 vs. ExPASy Swiss-Prot
Match: TIP_ANTMA (Probable aquaporin TIP-type OS=Antirrhinum majus GN=DIP PE=2 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 4.551e-11
Identity = 37/103 (35.92%), Postives = 53/103 (51.46%), Query Frame = 3
Query:    3 AEFIAXXXXXXXXXXXXIGYKSQT-DPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLILALLYMVAQCLGAICGCGFVK 308
            AEFIA            I Y   T D  L+       G++ +A A    +F+ V   A +SGGH+NPAVT GL +G  ++++  L Y +AQCLG+   C  +K
Sbjct:   23 AEFIATLLFVFAGVGSAIAYNKLTSDAALDP-----AGLVAVAVAHAFALFVGVSMAANVSGGHLNPAVTLGLAVGGNITILTGLFYWIAQCLGSTVACLLLK 120          

HSP 2 Score: 24.2534 bits (51), Expect = 4.551e-11
Identity = 11/18 (61.11%), Postives = 14/18 (77.78%), Query Frame = 2
Query:  383 GLGAEIIGTFVLVYTVFS 436
            G+  EII TF LVYTV++
Sbjct:  142 GVVMEIIITFALVYTVYA 159          
BLAST of FC920786 vs. ExPASy Swiss-Prot
Match: TIP22_ORYSJ (Probable aquaporin TIP2-2 OS=Oryza sativa subsp. japonica GN=TIP2-2 PE=2 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 5.908e-11
Identity = 30/66 (45.45%), Postives = 44/66 (66.67%), Query Frame = 3
Query:  111 GILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLILALLYMVAQCLGAICGCGFVK 308
            G++ +A   G  +F+ V   A ISGGH+NPAVTFGL LG +++++  + Y +AQ LGAI G   V+
Sbjct:   56 GLVAVAVCHGFGLFVAVAIGANISGGHVNPAVTFGLALGGQITILTGVFYWIAQLLGAIVGAVLVQ 121          

HSP 2 Score: 23.483 bits (49), Expect = 5.908e-11
Identity = 11/18 (61.11%), Postives = 14/18 (77.78%), Query Frame = 2
Query:  383 GLGAEIIGTFVLVYTVFS 436
            G+  EII TF LVYTV++
Sbjct:  141 GVVMEIIVTFGLVYTVYA 158          
BLAST of FC920786 vs. ExPASy Swiss-Prot
Match: TIP21_ORYSJ (Probable aquaporin TIP2-1 OS=Oryza sativa subsp. japonica GN=TIP2-1 PE=2 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 5.908e-11
Identity = 39/102 (38.24%), Postives = 51/102 (50.00%), Query Frame = 3
Query:    3 AEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLILALLYMVAQCLGAICGCGFVK 308
            AEFIA            I Y   T    N       G++ IA A    +F+ V   A ISGGH+NPAVTFGL +G  ++++  L Y +AQ LGA   C  +K
Sbjct:   23 AEFIATLLFVFAGVGSAIAYGQLT----NGGALDPAGLVAIAIAHALALFVGVSVAANISGGHLNPAVTFGLAVGGHITILTGLFYWIAQLLGASIACLLLK 120          

HSP 2 Score: 23.8682 bits (50), Expect = 5.908e-11
Identity = 10/18 (55.56%), Postives = 14/18 (77.78%), Query Frame = 2
Query:  383 GLGAEIIGTFVLVYTVFS 436
            G+  EI+ TF LVYTV++
Sbjct:  141 GVVMEIVITFALVYTVYA 158          
BLAST of FC920786 vs. ExPASy Swiss-Prot
Match: TIP13_ARATH (Aquaporin TIP1-3 OS=Arabidopsis thaliana GN=TIP1-3 PE=1 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 9.950e-11
Identity = 28/66 (42.42%), Postives = 44/66 (66.67%), Query Frame = 3
Query:  111 GILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLILALLYMVAQCLGAICGCGFVK 308
            G++  + +    +F+ V   A +SGGH+NPAVTFG F+G  ++L+ A+LY +AQ LGA+  C  +K
Sbjct:   57 GLVAASLSHAFALFVAVSVGANVSGGHVNPAVTFGAFIGGNITLLRAILYWIAQLLGAVVACLLLK 122          

HSP 2 Score: 21.9422 bits (45), Expect = 9.950e-11
Identity = 9/14 (64.29%), Postives = 12/14 (85.71%), Query Frame = 2
Query:  395 EIIGTFVLVYTVFS 436
            EI+ TF LVYTV++
Sbjct:  148 EIVMTFGLVYTVYA 161          
BLAST of FC920786 vs. ExPASy Swiss-Prot
Match: TIP23_MAIZE (Aquaporin TIP2-3 OS=Zea mays GN=TIP2-3 PE=2 SV=2)

HSP 1 Score: 63.1586 bits (152), Expect = 9.955e-11
Identity = 38/98 (38.78%), Postives = 49/98 (50.00%), Query Frame = 3
Query:    3 AEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLILALLYMVAQCLGAICGC 296
            AEFIA            I Y   T            G++ IA A    +F+ V   A ISGGH+NPAVTFGL +G  ++++  +LY VAQ LGA   C
Sbjct:   23 AEFIATLLFVFAGVGSAIAYSQLTKGGA----LDPAGLVAIAIAHAFALFVGVSMAANISGGHLNPAVTFGLAVGGHITILTGILYWVAQLLGASVAC 116          

HSP 2 Score: 23.8682 bits (50), Expect = 9.955e-11
Identity = 10/18 (55.56%), Postives = 14/18 (77.78%), Query Frame = 2
Query:  383 GLGAEIIGTFVLVYTVFS 436
            G+  EI+ TF LVYTV++
Sbjct:  141 GVVMEIVITFALVYTVYA 158          
BLAST of FC920786 vs. ExPASy Swiss-Prot
Match: TIP22_ARATH (Probable aquaporin TIP2-2 OS=Arabidopsis thaliana GN=TIP2-2 PE=1 SV=2)

HSP 1 Score: 62.7734 bits (151), Expect = 9.955e-11
Identity = 28/62 (45.16%), Postives = 40/62 (64.52%), Query Frame = 3
Query:  111 GILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLILALLYMVAQCLGAICGC 296
            G++ +A A    +F+ V   A ISGGH+NPAVT GL +G  +++I    Y +AQCLG+I  C
Sbjct:   55 GLVAVAVAHAFALFVGVSIAANISGGHLNPAVTLGLAVGGNITVITGFFYWIAQCLGSIVAC 116          

HSP 2 Score: 24.2534 bits (51), Expect = 9.955e-11
Identity = 10/18 (55.56%), Postives = 14/18 (77.78%), Query Frame = 2
Query:  383 GLGAEIIGTFVLVYTVFS 436
            G+  EI+ TF LVYTV++
Sbjct:  142 GVVMEIVVTFALVYTVYA 159          
The following BLAST results are available for this feature:
BLAST of FC920786 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
TIP11_ARATH2.079e-1136.27Aquaporin TIP1-1 OS=Arabidopsis thaliana GN=TIP1-1... [more]
AQP1_PIG2.692e-1139.02Aquaporin-1 OS=Sus scrofa GN=AQP1 PE=2 SV=3[more]
TIP12_ORYSJ2.699e-1136.27Probable aquaporin TIP1-2 OS=Oryza sativa subsp. j... [more]
TIP23_ARATH2.701e-1148.39Aquaporin TIP2-3 OS=Arabidopsis thaliana GN=TIP2-3... [more]
TIP_ANTMA4.551e-1135.92Probable aquaporin TIP-type OS=Antirrhinum majus G... [more]
TIP22_ORYSJ5.908e-1145.45Probable aquaporin TIP2-2 OS=Oryza sativa subsp. j... [more]
TIP21_ORYSJ5.908e-1138.24Probable aquaporin TIP2-1 OS=Oryza sativa subsp. j... [more]
TIP13_ARATH9.950e-1142.42Aquaporin TIP1-3 OS=Arabidopsis thaliana GN=TIP1-3... [more]
TIP23_MAIZE9.955e-1138.78Aquaporin TIP2-3 OS=Zea mays GN=TIP2-3 PE=2 SV=2[more]
TIP22_ARATH9.955e-1145.16Probable aquaporin TIP2-2 OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionC32013A07EF RVDevelop1 Citrus clementina cDNA clone C32013A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920786 ID=FC920786; Name=FC920786; organism=Citrus clementina; type=EST; length=446bp
TTGCTGAGTTCATCGCTACGCTTTTGTTTCTTTATGTTACCGTCTTGACT
GTGATTGGATACAAGAGCCAGACTGATCCCAACTTGAATACCGATCAGTG
TGGTGGCGTTGGCATTCTTGGCATCGCTTGGGCCTTTGGTGGCATGATCT
TCATTCTCGTTTACTGCACAGCCGGTATTTCTGGTGGACATATCAACCCG
GCTGTGACATTCGGACTGTTCTTGGGGCGCAAGGTGTCGCTCATCCTAGC
TCTTTTGTACATGGTAGCACAGTGCTTGGGTGCAATCTGTGGTTGTGGGT
TTGTGAAGGCTTTCCAAAAATCATACTACAACAGGTATGGAGGTGGGGCC
AATGAGCTAGCTGATGGATACACAAGGGCACCGGACTGGGTGCTGAGATC
ATCGGTACTTTCGTTCTTGTCTACACTGTTTTCTCTGCCACTGATC
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