FC920795

Overview
NameFC920795
Unique NameFC920795
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length691
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14200 contig Ccv1_Contig14200:1..691. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920795 vs. ExPASy Swiss-Prot
Match: CHSC_IPOPU (Chalcone synthase C (Fragment) OS=Ipomoea purpurea GN=CHSC PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.336e-36
Identity = 81/195 (41.54%), Postives = 117/195 (60.00%), Query Frame = 1
Query:  100 KASPGKATILALGKAFPHQLVMQEFLVDGYFKNTNCDDP-ELKQKLTRLCKTTTVKTRYVVMSDEILKKYPELAIEGLPTVKQRLDICNKAVTQMAIEASQACIKSWGRPITDITHVVYVSSSEARLPGGDLYLARGLGLSPETQRVMLYFMGCSGGVSGLRVAKDIAENNPGSRVLLATSETTIIEFKPPSAER 681
            K   G A ILA+G A P   V Q    D YF+ TN +   E K+K  R+C  + ++ R++V+++E+LKK P L      ++  R DI    V ++  EA+   IK WGRPI++ITH+V+ +SS   +PG D  LA+ LGLS    R+M+Y  GC+ G   LR+AKD+AENN G RVL+  SE  +  F+ PS ++
Sbjct:   17 KRFDGHAKILAIGTAIPANWVDQTTYPDFYFRITNSEHLLEYKEKFRRICNKSKIRKRHLVITEELLKKNPNLCTYNDASLNTRQDILVSEVPKLGKEAAMKAIKEWGRPISEITHLVFCTSSGVDMPGADFQLAKLLGLSSSVNRLMMYQQGCNAGAVMLRLAKDLAENNKGGRVLVVCSEVMLSVFRGPSLQQ 211          
BLAST of FC920795 vs. ExPASy Swiss-Prot
Match: CHS4_IPOBA (Chalcone synthase LF4 OS=Ipomoea batatas GN=CHS-LF4 PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.336e-36
Identity = 79/188 (42.02%), Postives = 116/188 (61.70%), Query Frame = 1
Query:  112 GKATILALGKAFPHQLVMQEFLVDGYFKNTNCDDP-ELKQKLTRLCKTTTVKTRYVVMSDEILKKYPELAIEGLPTVKQRLDICNKAVTQMAIEASQACIKSWGRPITDITHVVYVSSSEARLPGGDLYLARGLGLSPETQRVMLYFMGCSGGVSGLRVAKDIAENNPGSRVLLATSETTIIEFKPPS 672
            G ATILA+G   P   V Q    D YF+ TN +   ELK++  R+C  + +  RY+ +++EILK+ P       P++  R DI    V ++  EA+Q+ IK WG+P + ITHVV+ ++S   +PG D  L + LGL P  +R+M+Y  GC  G + LR+AKD+AENN G+RVL+  SE T++ F+ PS
Sbjct:   15 GPATILAIGTVTPANCVNQSTYPDYYFRITNSEHKTELKERFQRMCDKSMITKRYMHLTEEILKENPSFCEYMAPSLDARQDIAVVEVPKLGKEAAQSAIKEWGQPKSKITHVVFCTTSGVDMPGADYQLTKLLGLRPSVKRLMMYQQGCFAGGTVLRLAKDLAENNKGARVLIVCSEITVVTFRGPS 202          
BLAST of FC920795 vs. ExPASy Swiss-Prot
Match: THS3_VITVI (Stilbene synthase 3 (Fragment) OS=Vitis vinifera PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.664e-36
Identity = 77/190 (40.53%), Postives = 116/190 (61.05%), Query Frame = 1
Query:  112 GKATILALGKAFPHQLVMQEFLVDGYFKNTNCDD-PELKQKLTRLCKTTTVKTRYVVMSDEILKKYPELAIEGLPTVKQRLDICNKAVTQMAIEASQACIKSWGRPITDITHVVYVSSSEARLPGGDLYLARGLGLSPETQRVMLYFMGCSGGVSGLRVAKDIAENNPGSRVLLATSETTIIEFKPPSAE 678
            G ATILA+G A P   V Q    D YF+ T  +   ELK+K  R+C  + +K RY+ +++E+L+++P +     P++  R +I    V ++  EA+   +K WG+P + ITH+V+ ++S   +PG D  LA  LGL    +RVMLY  GC  G + LR AKD+AENN G+RVL+  SE T++ F+ PS +
Sbjct:   12 GPATILAIGTATPDHCVYQSDYADYYFRVTKSEPMSELKKKFNRICDKSMIKKRYIHLTEEMLEEHPNIGAYMAPSLNIRQEIITAEVPKLGKEAALKALKEWGQPKSKITHLVFCTTSGVEMPGADYKLANLLGLETSVRRVMLYHQGCYAGGTVLRTAKDLAENNAGARVLVVCSEITVVTFRGPSED 201          
BLAST of FC920795 vs. ExPASy Swiss-Prot
Match: CHS9_DAUCA (Chalcone synthase 9 OS=Daucus carota GN=CHS9 PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.664e-36
Identity = 77/188 (40.96%), Postives = 116/188 (61.70%), Query Frame = 1
Query:  112 GKATILALGKAFPHQLVMQEFLVDGYFKNTNCDD-PELKQKLTRLCKTTTVKTRYVVMSDEILKKYPELAIEGLPTVKQRLDICNKAVTQMAIEASQACIKSWGRPITDITHVVYVSSSEARLPGGDLYLARGLGLSPETQRVMLYFMGCSGGVSGLRVAKDIAENNPGSRVLLATSETTIIEFKPPS 672
            G AT+LA+G A P   V Q    D YF+ TN +D PELK+K  R+C+ + + TRY+ +++++LK+ P        ++  R DI    V ++  EA+   IK WGRP + ITH+++ ++S   +PG D  L + LGL P  +R M+Y  GC  G + LR+AKD+AENN  +RVL+  SE T+I F+ P+
Sbjct:   15 GPATVLAIGTATPPNCVDQSAYADYYFRITNSEDKPELKEKFRRMCEKSMINTRYMHLTEDLLKQNPSFCEYMASSLDARQDIVVNEVPKLGKEAALRAIKEWGRPKSKITHLIFCTTSGVDMPGADFRLTKLLGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAENNKNARVLVVCSEITVITFRGPN 202          
BLAST of FC920795 vs. ExPASy Swiss-Prot
Match: CHS2_SOLLC (Chalcone synthase 2 OS=Solanum lycopersicum GN=CHS2 PE=2 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 7.397e-36
Identity = 79/188 (42.02%), Postives = 116/188 (61.70%), Query Frame = 1
Query:  112 GKATILALGKAFPHQLVMQEFLVDGYFKNTNCDD-PELKQKLTRLCKTTTVKTRYVVMSDEILKKYPELAIEGLPTVKQRLDICNKAVTQMAIEASQACIKSWGRPITDITHVVYVSSSEARLPGGDLYLARGLGLSPETQRVMLYFMGCSGGVSGLRVAKDIAENNPGSRVLLATSETTIIEFKPPS 672
            G ATI+A+G A P   V Q    D YF+ TN +   ELK+K  R+C  + +  RY+ +++EILK+ P +     P++  R DI    V ++  EA+Q  IK WG+P + ITHVV+ ++S   +PG D  L + LGL P  +R+M+Y  GC  G + +R+AKD+AENN G+RVL+  SE T + F+ PS
Sbjct:   15 GPATIMAIGTATPSNCVDQSTYPDYYFRITNSEHMTELKEKFKRMCDKSMINKRYMHLTEEILKENPNICEYMAPSLDARQDIVVVEVPKLGKEAAQKAIKEWGQPKSKITHVVFCTTSGVDMPGADYQLTKLLGLRPSVKRLMMYQQGCFAGGTVIRLAKDLAENNKGARVLVVCSEITAVTFRGPS 202          
BLAST of FC920795 vs. ExPASy Swiss-Prot
Match: CHSY_ANTMA (Chalcone synthase OS=Antirrhinum majus GN=CHS PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 9.661e-36
Identity = 79/188 (42.02%), Postives = 116/188 (61.70%), Query Frame = 1
Query:  112 GKATILALGKAFPHQLVMQEFLVDGYFKNTNCDD-PELKQKLTRLCKTTTVKTRYVVMSDEILKKYPELAIEGLPTVKQRLDICNKAVTQMAIEASQACIKSWGRPITDITHVVYVSSSEARLPGGDLYLARGLGLSPETQRVMLYFMGCSGGVSGLRVAKDIAENNPGSRVLLATSETTIIEFKPPS 672
            G AT+LA+G A P   V Q    D YF+ TN +   ELK+K  R+C  + +K RY+ +++EILK+ P +     P++  R DI    V ++  EA+Q  IK WG+P + ITH+V+ ++S   +PG D  L + LGL P  +R M+Y  GC  G + LR+AKD+AENN G+RVL+  SE T + F+ P+
Sbjct:   15 GPATVLAIGTATPANCVDQSTYPDYYFRITNSEHMTELKEKFKRMCDKSNIKRRYMHLTEEILKENPAMCEYMAPSLDARQDIVVVEVPRLGKEAAQKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLGLRPSVKRFMMYQQGCFAGGTVLRMAKDLAENNAGARVLVVCSEITAVTFRGPA 202          
BLAST of FC920795 vs. ExPASy Swiss-Prot
Match: CHS1_CICAR (Chalcone synthase 1 OS=Cicer arietinum GN=CHS1 PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 9.661e-36
Identity = 80/188 (42.55%), Postives = 116/188 (61.70%), Query Frame = 1
Query:  112 GKATILALGKAFPHQLVMQEFLVDGYFKNTNCDDP-ELKQKLTRLCKTTTVKTRYVVMSDEILKKYPELAIEGLPTVKQRLDICNKAVTQMAIEASQACIKSWGRPITDITHVVYVSSSEARLPGGDLYLARGLGLSPETQRVMLYFMGCSGGVSGLRVAKDIAENNPGSRVLLATSETTIIEFKPPS 672
            G ATILA+G A P   V Q    D YFK TN +   ELKQK  R+C  + +K+RY+ +++EILK+ P +     P++  R D+    V ++  EA+   IK WG+P + ITH+++ ++S   +PG D  L + LGL P  +R M+Y  GC  G + LR+AKD+AENN G+RVL+  SE T + F+ PS
Sbjct:   15 GPATILAIGTANPSNRVEQSTYPDFYFKITNSEHKVELKQKFQRMCDKSMIKSRYMYLTEEILKENPSVCEYMAPSLDVRQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEVTAVTFRGPS 202          
BLAST of FC920795 vs. ExPASy Swiss-Prot
Match: CHSE_IPOPU (Chalcone synthase E OS=Ipomoea purpurea GN=CHSE PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.262e-35
Identity = 77/188 (40.96%), Postives = 116/188 (61.70%), Query Frame = 1
Query:  112 GKATILALGKAFPHQLVMQEFLVDGYFKNTNCDD-PELKQKLTRLCKTTTVKTRYVVMSDEILKKYPELAIEGLPTVKQRLDICNKAVTQMAIEASQACIKSWGRPITDITHVVYVSSSEARLPGGDLYLARGLGLSPETQRVMLYFMGCSGGVSGLRVAKDIAENNPGSRVLLATSETTIIEFKPPS 672
            G ATI+A+G + P   V Q    D YF+ TN +   ELK+K  R+C+ + +K RY+ +++EIL + P +     P++  R DI    V ++  EA+Q  IK WG+P + ITH+V+ ++S   +PG D  L + LGL P  +R M+Y  GC  G + +R+AKD+AENN G+RVL+  SE T + F+ PS
Sbjct:   15 GPATIMAIGTSTPQNCVDQSTYPDYYFRITNSEHLVELKEKFKRMCEKSMIKKRYMYLTEEILTENPNICAYMAPSLDARQDIVVVEVPKLGKEAAQKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLGLQPSVKRFMMYQQGCFAGGTVIRLAKDLAENNKGARVLVVCSEITAVTFRGPS 202          
BLAST of FC920795 vs. ExPASy Swiss-Prot
Match: CHS6_TRISU (Chalcone synthase 6 OS=Trifolium subterraneum GN=CHS6 PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.262e-35
Identity = 80/188 (42.55%), Postives = 116/188 (61.70%), Query Frame = 1
Query:  112 GKATILALGKAFPHQLVMQEFLVDGYFKNTNCDDP-ELKQKLTRLCKTTTVKTRYVVMSDEILKKYPELAIEGLPTVKQRLDICNKAVTQMAIEASQACIKSWGRPITDITHVVYVSSSEARLPGGDLYLARGLGLSPETQRVMLYFMGCSGGVSGLRVAKDIAENNPGSRVLLATSETTIIEFKPPS 672
            G ATILA+G A P   V Q    D YFK TN +   ELK+K  R+C  + +K+RY+ +++EILK+ P L     P++  R D+    V ++  EA+   IK WG+P + ITH+++ ++S   +PG D  L + LGL P  +R M+Y  GC  G + LR+AKD+AENN G+RVL+  SE T + F+ PS
Sbjct:   15 GPATILAIGTANPANKVEQATYPDFYFKITNSEHKTELKEKFQRMCDKSMIKSRYMYLTEEILKENPSLCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEVTAVTFRGPS 202          
BLAST of FC920795 vs. ExPASy Swiss-Prot
Match: CHS3_TRISU (Chalcone synthase 3 OS=Trifolium subterraneum GN=CHS3 PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.262e-35
Identity = 80/188 (42.55%), Postives = 116/188 (61.70%), Query Frame = 1
Query:  112 GKATILALGKAFPHQLVMQEFLVDGYFKNTNCDDP-ELKQKLTRLCKTTTVKTRYVVMSDEILKKYPELAIEGLPTVKQRLDICNKAVTQMAIEASQACIKSWGRPITDITHVVYVSSSEARLPGGDLYLARGLGLSPETQRVMLYFMGCSGGVSGLRVAKDIAENNPGSRVLLATSETTIIEFKPPS 672
            G ATILA+G A P   V Q    D YFK TN +   ELK+K  R+C  + +K+RY+ +++EILK+ P L     P++  R D+    V ++  EA+   IK WG+P + ITH+++ ++S   +PG D  L + LGL P  +R M+Y  GC  G + LR+AKD+AENN G+RVL+  SE T + F+ PS
Sbjct:   15 GPATILAIGTANPANKVEQATYPDFYFKITNSEHKVELKEKFQRMCDKSMIKSRYMYLTEEILKENPSLCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEVTAVTFRGPS 202          
The following BLAST results are available for this feature:
BLAST of FC920795 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 144
Match NameE-valueIdentityDescription
CHSC_IPOPU4.336e-3641.54Chalcone synthase C (Fragment) OS=Ipomoea purpurea... [more]
CHS4_IPOBA4.336e-3642.02Chalcone synthase LF4 OS=Ipomoea batatas GN=CHS-LF... [more]
THS3_VITVI5.664e-3640.53Stilbene synthase 3 (Fragment) OS=Vitis vinifera P... [more]
CHS9_DAUCA5.664e-3640.96Chalcone synthase 9 OS=Daucus carota GN=CHS9 PE=2 ... [more]
CHS2_SOLLC7.397e-3642.02Chalcone synthase 2 OS=Solanum lycopersicum GN=CHS... [more]
CHSY_ANTMA9.661e-3642.02Chalcone synthase OS=Antirrhinum majus GN=CHS PE=3... [more]
CHS1_CICAR9.661e-3642.55Chalcone synthase 1 OS=Cicer arietinum GN=CHS1 PE=... [more]
CHSE_IPOPU1.262e-3540.96Chalcone synthase E OS=Ipomoea purpurea GN=CHSE PE... [more]
CHS6_TRISU1.262e-3542.55Chalcone synthase 6 OS=Trifolium subterraneum GN=C... [more]
CHS3_TRISU1.262e-3542.55Chalcone synthase 3 OS=Trifolium subterraneum GN=C... [more]

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Properties
Property NameValue
Genbank descriptionC32013B05EF RVDevelop1 Citrus clementina cDNA clone C32013B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920795 ID=FC920795; Name=FC920795; organism=Citrus clementina; type=EST; length=691bp
GACTGTGGATTCAGGCAGTTTTCCCACACCTCCTGAAAGTTTCATCAACG
TTTCTTTTGATAGAGAAGAAGCATGGGCAGCTTAGCAGGTTTCGCAAATA
AGGCAAGCCCTGGCAAAGCTACCATTCTGGCTCTTGGCAAGGCTTTCCCT
CACCAACTTGTCATGCAGGAATTTCTGGTTGATGGGTACTTCAAGAACAC
CAACTGTGATGATCCCGAGCTCAAGCAGAAGCTAACCCGACTCTGCAAGA
CAACAACGGTTAAAACAAGATATGTAGTCATGTCAGACGAGATCCTGAAG
AAATATCCTGAGCTTGCCATAGAAGGCCTTCCTACTGTGAAGCAAAGGCT
TGATATCTGCAACAAAGCTGTCACCCAAATGGCCATTGAAGCTTCACAAG
CTTGCATCAAGAGCTGGGGCAGGCCAATAACAGACATAACCCACGTAGTT
TATGTCTCCTCAAGTGAAGCTCGGCTGCCTGGGGGTGATCTCTACTTGGC
AAGAGGCCTTGGACTCAGTCCTGAGACTCAGCGTGTCATGCTCTACTTCA
TGGGCTGCTCTGGTGGAGTTTCTGGCCTGCGTGTGGCGAAGGACATTGCT
GAAAACAATCCTGGAAGCAGAGTTCTGCTAGCTACTTCCGAAACTACAAT
TATTGAGTTCAAGCCACCAAGTGCAGAAAGGCCATATGACT
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